mRNA_Ecto-sp13_S_contig67812.17709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67812.17709.1
Unique NamemRNA_Ecto-sp13_S_contig67812.17709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A6H5JTL7_9PHAE (Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.170e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    7 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 189
            +VACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL
Sbjct:  511 RVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 571
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: D8LIB7_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.430e-30
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    7 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 189
            +VA IYLV+GVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL
Sbjct:  513 RVASIYLVSGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 573
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A7S3UQB1_HETAK (Rhomboid-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQB1_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 6.710e-14
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSV 156
            +++  IYL++G+FGT+ SAIFVP Q+MVGASGAIFG+ GA WADL QNWSV
Sbjct:  264 QRLTVIYLLSGIFGTLCSAIFVPYQLMVGASGAIFGMVGARWADLIQNWSV 314
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A835YQV6_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.040e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    7 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQ 162
            +V  I++V+GVF T VSAIF+P QVMVGASGAI G+ G +WADL QNWS+ Q
Sbjct:   83 KVLVIFIVSGVFSTAVSAIFLPYQVMVGASGAILGLLGGVWADLLQNWSLKQ 134
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A1V9Z7A4_9STRA (Rhomboid-like protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7A4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.290e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    4 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVL 189
            R++A IY   G+ G IVS  FVPT V VGASGAIFG+FGA +A+   NW +  +RC   T L
Sbjct:  151 RRIALIYFATGIIGAIVSGFFVPTVVGVGASGAIFGLFGATFAEFMLNWKLYTNRCCHMTNL 212
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A2R5H0C6_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0C6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.570e-11
Identity = 28/52 (53.85%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 SRQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSV 156
            S +++ I++ +G+FG ++SAIF+P Q+ VGASGA+FG+FGA W+DL  NWS+
Sbjct:  224 SLKISIIFIGSGIFGVLLSAIFLPQQLSVGASGALFGLFGAAWSDLLHNWSL 275
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A7S3PMX5_9STRA (Rhomboid-like protein n=4 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMX5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.210e-10
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    7 QVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRM 177
            ++A + + +G+FG ++SA+F P  V VGASGAIFG+FGA WADL QNW + + R ++
Sbjct:  153 RIATVAISSGIFGVVMSALFAPHLVGVGASGAIFGLFGAAWADLAQNWELYRGRNKL 209
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: W4FXV8_9STRA (Rhomboid-like protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXV8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.970e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    4 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDR-CRMFTVL 189
            R+V CIY  +G+ G + SA+FVP  + VGASGAIFG+FGA +A+   NW +  +R C M  ++
Sbjct:  158 RRVVCIYFASGLIGAMCSAVFVPDVIGVGASGAIFGLFGATFAEFVLNWDLYANRLCHMTNLI 220
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: A0A6G0WTH8_9STRA (Rhomboid-like protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTH8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.200e-10
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    4 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRC 171
            R+V  +Y V G+ G + SA+FVP  V VGASGAIFG+FGA +A+   NW +  +RC
Sbjct:  171 RRVVILYFVTGLIGAMASAVFVPNVVGVGASGAIFGLFGATFAEFLLNWELYTNRC 226
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BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Match: W4FVH6_9STRA (Rhomboid-like protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVH6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.510e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    4 RQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDR-CRMFTVL 189
            R+V CIY  +G+ G + SA+FVP  + VGASGAIFG+FGA +A+   NW +  +R C M  ++
Sbjct:  158 RRVVCIYFASGLIGAMCSAVFVPDVIGVGASGAIFGLFGATFAEFVLNWDLYANRLCHMTNLI 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67812.17709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTL7_9PHAE9.170e-3298.36Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LIB7_ECTSI5.430e-3095.08Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
A0A7S3UQB1_HETAK6.710e-1468.63Rhomboid-like protein n=1 Tax=Heterosigma akashiwo... [more]
A0A835YQV6_9STRA5.040e-1365.38Rhomboid-like protein n=1 Tax=Tribonema minus TaxI... [more]
A0A1V9Z7A4_9STRA2.290e-1153.23Rhomboid-like protein n=1 Tax=Thraustotheca clavat... [more]
A0A2R5H0C6_9STRA4.570e-1153.85Rhomboid-like protein n=1 Tax=Hondaea fermentalgia... [more]
A0A7S3PMX5_9STRA1.210e-1050.88Rhomboid-like protein n=4 Tax=Aplanochytrium stocc... [more]
W4FXV8_9STRA4.970e-1047.62Rhomboid-like protein n=2 Tax=Aphanomyces astaci T... [more]
A0A6G0WTH8_9STRA6.200e-1051.79Rhomboid-like protein n=1 Tax=Aphanomyces euteiche... [more]
W4FVH6_9STRA7.510e-1047.62Rhomboid-like protein n=1 Tax=Aphanomyces astaci T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67812contigEcto-sp13_S_contig67812:54..242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.6
Seed ortholog evalue2.7e-25
Seed eggNOG ortholog2880.D8LIB7
Model size189
KEGG koko:K16571
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0005911,GO:0006508,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008283,GO:0009506,GO:0009894,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016477,GO:0016787,GO:0017171,GO:0019222,GO:0019538,GO:0023051,GO:0030054,GO:0030162,GO:0031090,GO:0031323,GO:0031329,GO:0031984,GO:0032268,GO:0032879,GO:0032880,GO:0040011,GO:0042058,GO:0042175,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048870,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051171,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051674,GO:0055044,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070201,GO:0071704,GO:0071944,GO:0080090,GO:0090087,GO:0098588,GO:0098791,GO:0098827,GO:0140096,GO:1901184,GO:1901564,GO:1903050,GO:1903362,GO:1903530,GO:1903531,GO:1904950
Exons1
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0705@1,KOG2289@2759
Cds size189
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.2608237-CDS-Ecto-sp13_S_contig67812:53..2421681463932.2608237-CDS-Ecto-sp13_S_contig67812:53..242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67812 54..242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67812.17709.1prot_Ecto-sp13_S_contig67812.17709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67812 54..242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67812.17709.1

>prot_Ecto-sp13_S_contig67812.17709.1 ID=prot_Ecto-sp13_S_contig67812.17709.1|Name=mRNA_Ecto-sp13_S_contig67812.17709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
SRQVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNW
SVNQDRCRMFTVL
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mRNA from alignment at Ecto-sp13_S_contig67812:54..242-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67812.17709.1 ID=mRNA_Ecto-sp13_S_contig67812.17709.1|Name=mRNA_Ecto-sp13_S_contig67812.17709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67812:54..242- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCGCCAGGTCGCGTGCATTTACCTGGTGGCAGGGGTGTTCGGGACGAT
AGTTTCGGCGATCTTCGTCCCGACGCAGGTCATGGTCGGAGCCTCGGGGG
CTATCTTCGGGGTATTCGGAGCGCTGTGGGCGGACCTTTGGCAGAACTGG
AGCGTTAACCAGGACCGATGCCGGATGTTCACCGTTCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67812:54..242-

>mRNA_Ecto-sp13_S_contig67812.17709.1 ID=mRNA_Ecto-sp13_S_contig67812.17709.1|Name=mRNA_Ecto-sp13_S_contig67812.17709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67812:54..242- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCGCCAGGTCGCGTGCATTTACCTGGTGGCAGGGGTGTTCGGGACGAT
AGTTTCGGCGATCTTCGTCCCGACGCAGGTCATGGTCGGAGCCTCGGGGG
CTATCTTCGGGGTATTCGGAGCGCTGTGGGCGGACCTTTGGCAGAACTGG
AGCGTTAACCAGGACCGATGCCGGATGTTCACCGTTCTC
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