mRNA_Ecto-sp13_S_contig67811.17708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67811.17708.1
Unique NamemRNA_Ecto-sp13_S_contig67811.17708.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.460e-34
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGGGRAPDDARAAALK 195
            MLHELVHNQIGPHSA FYRMLDQLNDECDKLI+EGITGRNMPFAGDGQSLGGGRAP+DARAAALK
Sbjct:   94 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALK 158
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.950e-32
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGGGRAPDDARAAALK 195
            MLHELVHNQIGPHSA FYR+LDQLNDECDKL +EGITGRNMPFAGDGQ LGGGRAP+DARAAALK
Sbjct:  139 MLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALK 203
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.260e-16
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGGGRAPDDARA 183
            +LHEL H   G HSA+FYR+LD L +EC+ L+  GI+GRNMP+ G+G++LGGG A  D RA
Sbjct:   59 VLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRA 119
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: A0A3L6PBX7_PANMI (DNA-dependent metalloprotease WSS1 n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6PBX7_PANMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGG 156
            MLHEL HN+ GPH A FY++ D+L  ECD+L+ +GITG    F G G+ LGG
Sbjct:   55 MLHELCHNERGPHDAQFYKLWDELRKECDELVSKGITGTGQGFDGTGRRLGG 106
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: A0A388KSJ2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KSJ2_CHABU)

HSP 1 Score: 70.5 bits (171), Expect = 1.230e-12
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGG 156
            MLHELVH ++GPH+A FY++LD+LN ECD+LI +G++G    F   GQ LGG
Sbjct:  213 MLHELVHIEVGPHNAQFYKLLDELNRECDELIAKGVSGSGAGFDCRGQRLGG 264
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: A0A2S3HL39_9POAL (Uncharacterized protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2S3HL39_9POAL)

HSP 1 Score: 69.7 bits (169), Expect = 1.810e-12
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGG 156
            MLHEL HN+ GPH A FY++ D+L  ECD+L+ +GITG    F G G+ LGG
Sbjct:   93 MLHELCHNERGPHDAQFYKLWDELRKECDELVSKGITGTGQGFDGTGRRLGG 144
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: A0A061RNB8_9CHLO (Dna damage response protein wss1-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNB8_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 1.820e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQS-LGGGRA 165
            +LHELVHN IG HSA+FY++LD++  EC+ L+  G+TG+ + FAG     LGGG A
Sbjct:   99 LLHELVHNVIGAHSASFYKLLDEITSECENLMARGVTGQGLGFAGQSAGKLGGGLA 154
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: A0A5J9TLP8_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TLP8_9POAL)

HSP 1 Score: 69.3 bits (168), Expect = 2.810e-12
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGG 156
            MLHEL HNQ GPH A FY++ D+L  EC++L+ +GITG    F G G+ LGG
Sbjct:   93 MLHELCHNQRGPHDAQFYKLWDELRKECEELVSKGITGSGQGFDGTGRRLGG 144
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: B9SAJ5_RICCO (Uncharacterized protein n=3 Tax=Ricinus communis TaxID=3988 RepID=B9SAJ5_RICCO)

HSP 1 Score: 68.9 bits (167), Expect = 3.200e-12
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGG 156
            MLHEL HNQ GPH+A+FY +LDQ+  EC++LI +GITG    F   G+ LGG
Sbjct:   93 MLHELCHNQYGPHNADFYNLLDQIRKECEELIAKGITGTGQGFDLPGRCLGG 144
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BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Match: UPI001CFA7513 (DNA-dependent metalloprotease WSS1-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA7513)

HSP 1 Score: 68.6 bits (166), Expect = 4.500e-12
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSLGG 156
            MLHEL HN+ GPH+A+FYR+LD++  ECD+L+ +GITG    F   G+ LGG
Sbjct:   92 MLHELCHNEYGPHNADFYRLLDEIRKECDELMAKGITGTGKGFDLPGRRLGG 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67811.17708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMC5_ECTSI3.460e-3495.38Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J6X1_9PHAE4.950e-3290.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTT9_9STRA1.260e-1657.38WLM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A3L6PBX7_PANMI1.010e-1255.77DNA-dependent metalloprotease WSS1 n=1 Tax=Panicum... [more]
A0A388KSJ2_CHABU1.230e-1257.69Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2S3HL39_9POAL1.810e-1255.77Uncharacterized protein n=5 Tax=Panicum TaxID=4539... [more]
A0A061RNB8_9CHLO1.820e-1253.57Dna damage response protein wss1-like n=1 Tax=Tetr... [more]
A0A5J9TLP8_9POAL2.810e-1255.77Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]
B9SAJ5_RICCO3.200e-1257.69Uncharacterized protein n=3 Tax=Ricinus communis T... [more]
UPI001CFA75134.500e-1255.77DNA-dependent metalloprotease WSS1-like n=1 Tax=Ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67811contigEcto-sp13_S_contig67811:139..715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score132.1
Seed ortholog evalue9.3e-29
Seed eggNOG ortholog2880.D7FJ82
Model size195
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
Exons2
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
Ec32 ortholog descriptionWLM
Ec32 orthologEc-00_000920.1
Cds size195
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.2117076-CDS-Ecto-sp13_S_contig67811:138..2301681463932.2117076-CDS-Ecto-sp13_S_contig67811:138..230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67811 139..230 -
1681463932.2252183-CDS-Ecto-sp13_S_contig67811:612..7151681463932.2252183-CDS-Ecto-sp13_S_contig67811:612..715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67811 613..715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67811.17708.1prot_Ecto-sp13_S_contig67811.17708.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67811 139..715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67811.17708.1

>prot_Ecto-sp13_S_contig67811.17708.1 ID=prot_Ecto-sp13_S_contig67811.17708.1|Name=mRNA_Ecto-sp13_S_contig67811.17708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MLHELVHNQIGPHSANFYRMLDQLNDECDKLIQEGITGRNMPFAGDGQSL
GGGRAPDDARAAALK
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mRNA from alignment at Ecto-sp13_S_contig67811:139..715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67811.17708.1 ID=mRNA_Ecto-sp13_S_contig67811.17708.1|Name=mRNA_Ecto-sp13_S_contig67811.17708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67811:139..715- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCACGAGCTGGTGCACAACCAGATCGGCCCCCACAGCGCAAATTT
CTACCGGATGTTGGACCAGCTCAACGACGAGTGCGACAAGCTAATTCAGG
AAGGTGTGTTCGCTTAATTAGCATCGACCGCGCTAAGTGAATGACCAATG
AAAAGCCGTCAGTGCCAGCGGAAAAAACCAAGGTCCCTGGAGGGAGGGGG
CAATGTTCGAGTCATGCGCAACTGCGAATGCCAAAATGAATCTCGTTGCG
TGTCCTTGCTTACGCTCCCGCTGAGCTCAACCTTATCCATTTGTGCATTG
TCTCTACTTTGCTCGCTCAATGCCTCGTGCCTGTTTGTTGTTTCTTACAT
AAATAATATGGTTCTGGCGTACGAGCTTGTCGGGGCCAAGTGGGTCGTAC
GTACTTGATCCCGTCGTGATCATCATTTATTTTTGGCCCTGCGTCTCGTC
TTGACTCGTGTGTCCTTACTCCCGCCGCGTTGCAGGCATCACCGGGCGCA
ACATGCCATTCGCGGGAGACGGGCAGTCCTTAGGAGGGGGGCGAGCCCCA
GATGATGCTAGGGCCGCTGCGCTAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67811:139..715-

>mRNA_Ecto-sp13_S_contig67811.17708.1 ID=mRNA_Ecto-sp13_S_contig67811.17708.1|Name=mRNA_Ecto-sp13_S_contig67811.17708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67811:139..715- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCACGAGCTGGTGCACAACCAGATCGGCCCCCACAGCGCAAATTT
CTACCGGATGTTGGACCAGCTCAACGACGAGTGCGACAAGCTAATTCAGG
AAGGCATCACCGGGCGCAACATGCCATTCGCGGGAGACGGGCAGTCCTTA
GGAGGGGGGCGAGCCCCAGATGATGCTAGGGCCGCTGCGCTAAAG
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