mRNA_Ecto-sp13_S_contig678.17704.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig678.17704.1
Unique NamemRNA_Ecto-sp13_S_contig678.17704.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig678.17704.1 vs. uniprot
Match: A0A6H5KEY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY8_9PHAE)

HSP 1 Score: 472 bits (1214), Expect = 3.200e-154
Identity = 345/448 (77.01%), Postives = 351/448 (78.35%), Query Frame = 1 
Query:    1 PGVAGAWGQEAAQPSRGGKNNGYPQEAFDTFRRAPSPFGSHGPDGRYRQPRAPTTXXXXXXXXXXVDREEDGADVPLPGRRGAGDGGTNDAGLASRSDGSAEASASSSPGGDRAGGDEGGSVSNVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----AVKPSHDKDERGLRGKDESATEACSERSASSTSYSIAWTAAASRVEGGDDRGAGPRDVTAVEMSQQRGCIEEGDWGNGRDDVGGDELGEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGVQAKAYTWKDGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDPTAATDNRGYXXXXXXXXXXXXXXXXXRGKAPPRGGKSNGKNKSPTERGKSNNSGVNNDXXXDTASRALDLELAKIEAHALLYAQQQQHRPLEDAMAAPPTT 1332
            PGV+GAWGQEAAQPS GGK+N YPQE F+TFRRAPSPFGSHGPDGRYRQPRAPT XXXXXXXXX VDREE+GADVPLP RRGAGD GTN AGLASRSDGSAE SASSSPGGDRAGGDEGG VSNVGGXXXXXXXXXXXXX               XXX  XXX         A    AVKPSHDKDER L GKDESATEACSERSASSTSYSIAWTAAASRVEGGDDRGAGPRDV AVEMSQ+RGC EEGDWGNGRDDVG DELGEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGVQAKAYTWKDGRGG XXXXXXXXXXXXXXXXX              DLDPT  TDNRGY    X XXXXXXXXXXX GKAP                           XXX  ASRALDLELAKI+AHALLYAQQQQHRPLEDAMAAPPTT
Sbjct:   28 PGVSGAWGQEAAQPSWGGKSNDYPQETFNTFRRAPSPFGSHGPDGRYRQPRAPTAXXXXXXXXX-VDREENGADVPLPERRGAGDSGTNYAGLASRSDGSAEVSASSSPGGDRAGGDEGGGVSNVGGXXXXXXXXXXXXXSAEVSAVAGAATEAAXXXVPXXXPVKDTPAAAADPAAAVKPSHDKDERRLGGKDESATEACSERSASSTSYSIAWTAAASRVEGGDDRGAGPRDVAAVEMSQRRGCTEEGDWGNGRDDVGDDELGEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGVQAKAYTWKDGRGGSXXXXXXXXXXXXXXXXXNTSDKSNSSGIVAADLDPTTTTDNRGYTNTNXKXXXXXXXXXXX-GKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASRALDLELAKIKAHALLYAQQQQHRPLEDAMAAPPTT 473
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BLAST of mRNA_Ecto-sp13_S_contig678.17704.1 vs. uniprot
Match: D8LNC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC4_ECTSI)

HSP 1 Score: 456 bits (1174), Expect = 1.600e-148
Identity = 340/444 (76.58%), Postives = 350/444 (78.83%), Query Frame = 1 
Query:    1 PGVAGAWGQEAAQPSRGGKNNGYPQEAFDTFRRAPSPFGSHGPDGRYRQPRAPTTXXXXXXXXXX-VDREEDGADVPLPGRRGAGDGGTNDAGLASRSDGSAEASASSSPGGDRAGGDEGGSVSNVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVKPSHDKDERGLRGKDESATEACSERSASSTSYSIAWTAAASRVEGGDDRGAGPRDVTAVEMSQQRGCIEEGDWGNGRDDVGGDELGEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGVQAKAYTWKDGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDPTAATDNRGYXXXXXXXXXXXXXXXXXRGKAPPRGGKSNGKNKSPTERGKSNNSGVNNDXXXDTASRALDLELAKIEAHALLYAQQQQHRPLEDAMAAPPT 1329
            PG+AGAWGQEAAQPS GGKNN Y Q+AF+TFRRAPSPFGSHGPDGRYRQPRAPTTXXXXXXXXXX VDREE+GADVPLPGRRGAGDGG+ND GLASRSDGSAEASAS SPG DRAGGDEGG VSNVGG           XXXXXXXXXXXXXXXXXXXXXXXXX         AAVKPSH+ DERGLRGKDESATEACSERSASSTSYSIAWTAAASRVEGGDDRGAGPR+  AVEMSQQRGC+EE  WG+GRDD GGDELGEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGV AKAYTWKDGRGG XXXXXXXXXXXXXXX                DLDPT  TDNRG+     XXXXXXXXXXXX                                XXX  ASRALDLELAKIEAHALLYAQQQQHRPLEDAM APPT
Sbjct:   28 PGIAGAWGQEAAQPSWGGKNNSYQQQAFNTFRRAPSPFGSHGPDGRYRQPRAPTTXXXXXXXXXXXVDREENGADVPLPGRRGAGDGGSNDVGLASRSDGSAEASASCSPG-DRAGGDEGGGVSNVGGGDSSGSTRSAEXXXXXXXXXXXXXXXXXXXXXXXXXADA------AAVKPSHENDERGLRGKDESATEACSERSASSTSYSIAWTAAASRVEGGDDRGAGPREAAAVEMSQQRGCVEERGWGSGRDDAGGDELGEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGVPAKAYTWKDGRGGGXXXXXXXXXXXXXXXGSSTSDNGSSSGIVAADLDPTMTTDNRGHTNTKQXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXAASRALDLELAKIEAHALLYAQQQQHRPLEDAMRAPPT 454
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig678.17704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEY8_9PHAE3.200e-15477.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNC4_ECTSI1.600e-14876.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig678contigEcto-sp13_S_contig678:18322..22258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2826
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004380.1
Cds size630
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463931.7718747-UTR-Ecto-sp13_S_contig678:18321..198121681463931.7718747-UTR-Ecto-sp13_S_contig678:18321..19812Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig678 18322..19812 -
1681463931.815829-UTR-Ecto-sp13_S_contig678:21553..222581681463931.815829-UTR-Ecto-sp13_S_contig678:21553..22258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig678 21554..22258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463931.7831-CDS-Ecto-sp13_S_contig678:19812..202461681463931.7831-CDS-Ecto-sp13_S_contig678:19812..20246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 19813..20246 -
1681463931.7951455-CDS-Ecto-sp13_S_contig678:20718..207481681463931.7951455-CDS-Ecto-sp13_S_contig678:20718..20748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 20719..20748 -
1681463931.8054717-CDS-Ecto-sp13_S_contig678:21387..215531681463931.8054717-CDS-Ecto-sp13_S_contig678:21387..21553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 21388..21553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig678.17704.1prot_Ecto-sp13_S_contig678.17704.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig678 19813..21553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig678.17704.1

>prot_Ecto-sp13_S_contig678.17704.1 ID=prot_Ecto-sp13_S_contig678.17704.1|Name=mRNA_Ecto-sp13_S_contig678.17704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MSQQRGCIEEGDWGNGRDDVGGDELGEEGGDPDQGWAMSAEWEEYLRNSP
GVSRYLEGVQAKAYTWKDGRGGGGKGNGNKKGRKKRGTGSNTSDISNSSG
IAAADLDPTAATDNRGYTNTNTNTKQQQQQQQQQRGKAPPRGGKSNGKNK
SPTERGKSNNSGVNNDDDDDTASRALDLELAKIEAHALLYAQQQQHRPLE
DAMAAPPTT*
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mRNA from alignment at Ecto-sp13_S_contig678:18322..22258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig678.17704.1 ID=mRNA_Ecto-sp13_S_contig678.17704.1|Name=mRNA_Ecto-sp13_S_contig678.17704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3937bp|location=Sequence derived from alignment at Ecto-sp13_S_contig678:18322..22258- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGAGTTGCAGGAGCGTGGGGACAAGAGGCCGCTCAGCCTTCTCGGGG
CGGCAAGAACAACGGCTACCCGCAAGAGGCCTTCGACACCTTCCGCCGTG
CCCCGAGCCCCTTCGGGTCACACGGACCGGACGGCCGATACCGACAGCCT
CGCGCACCCACCACCACCGCCGCTACTGCTGCTGCTGCTGCTGCCGTAGA
TAGGGAGGAGGACGGCGCCGACGTTCCGCTTCCTGGGCGTCGCGGCGCCG
GTGATGGCGGCACCAATGACGCGGGGCTTGCTTCTCGAAGCGACGGGAGC
GCCGAGGCAAGCGCTTCCTCTAGCCCCGGCGGCGACCGCGCAGGCGGCGA
CGAGGGCGGTAGCGTCAGCAACGTCGGCGGCGGCGGTGGCAGCGGCGGCG
GCAGCGGTAGTACAGGCTCAGCTGAAGCCTCGGCCGCAGCGGAGGCGGCA
GCGGCGGCCGTGCCGGTGCCGGCGCCGGTGAAAGATGCCCCGGCCCCCGC
TGCCGACGCCGACGCCGCCGCCGTCAAACCCAGCCACGATAAAGACGAAC
GGGGGCTCCGCGGCAAGGACGAGTCGGCCACCGAGGCGTGCTCGGAGCGA
TCGGCGTCGAGCACGTCCTACTCGATTGCCTGGACAGCCGCCGCCAGCCG
CGTTGAGGGCGGGGACGATCGCGGAGCGGGGCCGAGGGATGTTACGGCCG
TTGAGATGTCTCAGCAGCGGGGGTGCATAGAGGAAGGGGATTGGGGGAAC
GGCAGGGATGACGTGGGTGGTGATGAGCTTGGGGAAGAAGGGGGGGATCC
GGATCAGGGGTGGGCCATGTCGGCGGAGTGGGAAGAGTACCTGAGGAACT
CTCCGGGCGTCTCCAGATACCGTGAGTTTCTGGTTCTTCTTTTTTGGTGC
GCTGTGGTGGATGCGCTCCGAAAGGACATGTACAAATATCATTGCGCTTT
CGAAAGCTGTTTGTCGGGAAAGCTACGTAAGTGGGGGTGTGTCGCATCGT
ATGTCGTACTCCACGTGCGTGATCAGGTTGGTCTTTTGGGGCTGGTGCTG
ACCCGTAATTACTTGGCATTTGTTTTTCGTGTGCCGGGGGGGGGAGGAGT
TGTGTGATGTACGTGTGTTATCTTGTGTCGTGTGCGGTATGGATTGCAAG
AGGAACCTTTCTCCCAACACCGACGGGCTCGCGAGGCACACATGCAGCGG
CGTCGGGTACATTTCATCCGCGGCAGTCAAGCGACCCTCTTGTCGAATCA
CAGCAATCAAATTTGCGTGTCTTTTTTATTCCCCATGATACACAGGTCGT
GTGGGGAGGTTTCGAGAAACTCACTCTACTTGTACGTCGACGCGTTTCAG
TCTCTCTCTTTTTCTCTCTCCGTCTCTCGTGCTTTCATGTCTCTCATTGT
TCCCCGCCCTCTTCCGCTCCTGCCCTCCCGCTCCCCCTCGTTGTCTCCTC
CTCCCCTTTGTGGTCTGGCGAACCGCCTGGAACGCTGGAATTCTGATAAC
CTGGGTGCAGTCGAAGGGGTGCAGGCTAAGGCGTACACCTGTGAGTCTCG
CTTTTGGATTCTGTTGATGCGGTTGTTATTGCTGTTGTTGTTCCTGTTGC
TGCTGCTGCTGCTGCTGCTACTACTTTGTTGCTGTGTGGTGGCAGCGTCT
GCTGGTGCTCGTCCCCCTCGGTATTCTCCTCCTGCATGCTTTGTACTCCA
TGGCGCCTCTCCGAACCAGATGCACCTCCCGCCAACGTCTTCGGCATTCC
ACAGACGCCAGGCCACCGGTTTTTCCTTCATTGGGACGGGGATGTACGAC
TGCTTCTCCTCTGCGTGCGCCCCTGTTCCTCGCTTGTCCCATTTCTACCC
CAAATGCTCTTGGCCTTCCCATCTCCCCATCTGATTGGTCGGTTCCTTTG
CCCCAACACCGCCGTACAACCACAATTGAATTCACCTCTCCTTCCGCCCA
CTCGCTCCGTCGACATCCTCGTGTTGGGGGGATACCATACATCAACTGTG
CGGCATCCCCAGGGAAAGACGGCAGGGGAGGTGGAGGGAAGGGCAACGGC
AACAAGAAAGGCAGGAAGAAACGCGGCACGGGCAGCAACACCAGCGACAT
CAGCAACAGCAGCGGCATCGCTGCAGCTGACCTCGATCCGACGGCGGCAA
CGGACAACAGAGGGTACACCAACACCAACACCAACACCAAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCGGGGCAAAGCTCCGCCCCGCGGCGGGAAAAG
TAATGGCAAGAACAAGAGCCCGACGGAGAGGGGAAAGAGCAACAACAGCG
GTGTCAATAACGACGACGACGACGACACTGCCTCAAGGGCGCTGGATCTA
GAGCTCGCCAAGATCGAGGCTCACGCGCTCTTATACGCGCAGCAGCAGCA
GCACCGGCCACTCGAGGACGCGATGGCCGCCCCGCCAACCACTTGATTCT
AGTCGACGTCGCCGTCGTCATCTACCTTTGCATCCCCCCATCCCCCCACA
AAGCCTCGCCGGGGCCCTGATACAACAGTTTTTGTGCGCGTGGGTGTGCG
CAACGCGGAACGCGGCTTGTGTATGTAGGTACCTGTTCGTCGGCCGTCCC
CCATATGTCGCCCTTGCCGCGAAAGAGATGGGGAGACAAACTACTAGAGA
AGAGAGGAAGGGGGCGAGAGTAAAGGATGGGAGGATGGGAGGGGGTCTCA
GGCTTTGCTTGTGTGGGCAAAACCCGGAAACGAGAAGAACGCTGCGCACA
CTCCTCCCTCCCGTGATTTCAGCACCGCCGTGGTTTGACACCGCTAGGCT
CTGTTTCTGCTGTACAACTGCGGGCGCGACTTACTGGCCGCGCGTCGTCA
AAGCCCATGTTTCTGTGTGTGTGTGTGTGACTTGTAACCTGGTTGCTCCC
GTCCCCGTCGTTATTTGTGGATCATTCATATGCGTCCTCCTCGTCGTCTT
TGTTGCTTGTCAGTTCGTCTTTGTTGGGAAATGCCCGCTGGTTTTTGTTT
TTTTGTTGTTGTCTGCGTTAATTTGACGAATCACCCCGTAGTGCCTTGGA
GTACTTGCTGGCTTTTTTTTGCCACCTTTGTTGCTTGTCGATCGAACCTT
GGAGTGCTGTTTGTTTGTCATCTTCGTCGTACTTCGGTTTCGTCTCTTGT
GGTGTTGGGGTTCATGAGATGCCCAATTCCCGCGGGCAGGCTGAGGAAGT
CGCTTTCAAGTGTGTCTAAAAAGTGGTAGAATAGTTTTGAACTTGTTCGT
GGTGGCAAGTTTCTTTTTAAGGTGAAAATTTTCGCAGGTGTGTGTGCGTG
TGTTTTTCTTATTTTTGTCTGCGTGTGCCAAGAGAGAAAAGTCGGGGTGC
ACGAGGCTGACGTGACGAGGAGTGAAGCGCGTTAGAGTTGACGTCAGCCG
TCAACGAAACAGGCAAAGCTGCGTGTGGTGCTCTTTTTGGAAGATAAGTG
CCTTCTGGCGTAGCAGCAGCTTGTACTTCTGTAGCGAGAAAGAAATCACG
TTCGTGCCCGTAGACAACCGTTCACTATTGTTCATGCGGATAAATAGTTG
GGTACATTGTATACAATAGGCCCCGCGGTCTAGTCAGGTTCAGAGTTGCA
AGTAGGCGTAGGCGCGAGAGGAAGAGGAGAGACTCGCTCGCTAGAAAGAT
CGGATCGGTGGGGGGGGAGTGTGTAGACGTTTCCAAAACAGGAGCAATGA
AGAAGTCACCCTGTGTGTTGTCCATAGTCGAGTGTCGCGAGTGGATTAGG
GTTATGGAGGGATCAAAAAGAGTCTTGAGAGTACTACTGGTATCACTGCT
GAGTATTTGAGTAGGCAAGACTGTCCCAGGACTGCCCCCGTATTTACGAA
CAAAAAAGAAAAATCGGTCTACTTTTCGGGCGCACCCGTTTGTTTGCCGT
TTCGACAGGAATAACAACGCACGCCGCAACCGGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig678:18322..22258-

>mRNA_Ecto-sp13_S_contig678.17704.1 ID=mRNA_Ecto-sp13_S_contig678.17704.1|Name=mRNA_Ecto-sp13_S_contig678.17704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig678:18322..22258- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCAGCAGCGGGGGTGCATAGAGGAAGGGGATTGGGGGAACGGCAG
GGATGACGTGGGTGGTGATGAGCTTGGGGAAGAAGGGGGGGATCCGGATC
AGGGGTGGGCCATGTCGGCGGAGTGGGAAGAGTACCTGAGGAACTCTCCG
GGCGTCTCCAGATACCTCGAAGGGGTGCAGGCTAAGGCGTACACCTGGAA
AGACGGCAGGGGAGGTGGAGGGAAGGGCAACGGCAACAAGAAAGGCAGGA
AGAAACGCGGCACGGGCAGCAACACCAGCGACATCAGCAACAGCAGCGGC
ATCGCTGCAGCTGACCTCGATCCGACGGCGGCAACGGACAACAGAGGGTA
CACCAACACCAACACCAACACCAAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGGGCAAAGCTCCGCCCCGCGGCGGGAAAAGTAATGGCAAGAACAAG
AGCCCGACGGAGAGGGGAAAGAGCAACAACAGCGGTGTCAATAACGACGA
CGACGACGACACTGCCTCAAGGGCGCTGGATCTAGAGCTCGCCAAGATCG
AGGCTCACGCGCTCTTATACGCGCAGCAGCAGCAGCACCGGCCACTCGAG
GACGCGATGGCCGCCCCGCCAACCACTTGA
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