mRNA_Ecto-sp13_S_contig678.17703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig678.17703.1
Unique NamemRNA_Ecto-sp13_S_contig678.17703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: D8LNC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC3_ECTSI)

HSP 1 Score: 721 bits (1862), Expect = 1.850e-257
Identity = 369/378 (97.62%), Postives = 371/378 (98.15%), Query Frame = 1
Query:  100 MALIAVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVNRAGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRRRYPRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDGNAHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEPEDPRDSFDPPSPPDGKRYGG 1233
            MALIA+ERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVN +GERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRR YPRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVE GYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQ LGRHGDGN HVGQALRDGWRCLVLMRDVVDIDGYPVDAECW GLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFV LCFYNEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEPEDPRDSFDPPSPPDGKRYGG
Sbjct:    1 MALIALERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVNLSGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRR-YPRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVE-GYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQFLGRHGDGNTHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWAGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVALCFYNEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEPEDPRDSFDPPSPPDGKRYGG 376          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: A0A6H5KEW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW3_9PHAE)

HSP 1 Score: 667 bits (1721), Expect = 3.130e-236
Identity = 342/360 (95.00%), Postives = 351/360 (97.50%), Query Frame = 1
Query:    1 MEEGQLLLENSHPGAGFRRLFSKNATAIYSGCLMALIAVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVNRAGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRRRYPRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDGNAHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEA 1080
            MEEGQLLLEN+HPG GFRRLFSKNATA+YSGCLMALIA+ERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVL+RVN AGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRR YPRK +LGAAVIFLGACVAIYLPISRL+NARATLHDDARSHEYDPVHLRG SGDYAIVE GYNTILY+LACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQ LGRHGDGN HVGQAL+DGWRCLVLMRDVVDIDGYPVDA+CW GLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEA
Sbjct:    1 MEEGQLLLENNHPGTGFRRLFSKNATAVYSGCLMALIALERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLKRVNLAGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRR-YPRKPMLGAAVIFLGACVAIYLPISRLMNARATLHDDARSHEYDPVHLRGGSGDYAIVE-GYNTILYMLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQSLGRHGDGNTHVGQALKDGWRCLVLMRDVVDIDGYPVDADCWAGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEA 358          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: A0A6V1NMU5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NMU5_HETAK)

HSP 1 Score: 140 bits (352), Expect = 3.380e-32
Identity = 108/368 (29.35%), Postives = 179/368 (48.64%), Query Frame = 1
Query:   97 LMALIAVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVV-LRRVNRAGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRRRYPRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGD--GNAHVGQALRDGWRCLVL--MRDVVDIDGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFY---NEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEPE 1176
            L+  +  ER+ FK  VDR+ PFRFVL Q +     + +  +V L+R+       +M  FP   L  +A LD++ L   +++AA   P +TV+LLQ    F +  S      ++Y R  ++G  ++     +A++    +++         A   +  P              A +N ++Y LA +PAA S + K+ AL +  RP+D + L+L V  ++ +F+ LAAP +Y+ Q LG   +    A    AL DGW C      R+    D  P  A+C     L   YV A +LVN  V +++  +   ++Y R +  S+  A   L  Y   +   +  DS ++  V  +I+++IGL +YHSV EP+
Sbjct:   45 LVLALTSERVLFKFTVDRLEPFRFVLIQEIVLFNLLVMFTIVSLKRMLTHDITAAMHEFPRNALITVAALDLVQLTATVMSAAQTKPVMTVILLQSIKAFSILASCAAGRAQKYSRGHLVGLLLVCAAMGLAVFPAAYQIV---------APEVDEPP--------------AAWNVLVYFLAGVPAAASGLVKERALVKFARPMDPYYLNLWVALYQFLFVLLAAPLSYKFQSLGHDWEFYPQASFAGALNDGWACAFWGEPRNGAS-DALPQRAQCAYSFYLAAGYVAAAVLVNVFVDRLLLYSTERAMY-RGVTASILVACAALALYTTQSNGVYYPDSLSLLDVVSIIMLVIGLEVYHSVKEPD 387          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: A0A1Z5JRU5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRU5_FISSO)

HSP 1 Score: 119 bits (299), Expect = 8.420e-25
Identity = 112/410 (27.32%), Postives = 190/410 (46.34%), Query Frame = 1
Query:  112 AVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVNRAGERGSMQ-GFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVS-----GGFCSRRRYPRKSVLGAAVIFLGAC---------VAIYLPISRLINARATLHDD-------------ARSHEYDPVHLRG--------------DSGDYAIVEA-----GYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDG-----NAHVGQALRDGWRCLVLMRDVVDIDG-YPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFY--NEAEWLH----DSFNVFTVSGLIVIMIGLRLYHSV 1164
            A ER TFKL+VDR APFR +  +AV   +A+ +G++V+           ++ G P+  + +MA+LD L ++ + V+   V PTLTV+L+Q + P    ++      G CS  R   +    A     GA                +S L+N   T   D             A+ H +  + L                D  ++   ++       NT+LYV +C+PAA+ T+YK++   Q+ +PV+ + L+L +  F+ +  ++ +P  + LQ LG HGD      +    +   DG RC V      D +  YP  A C   L LV  +V + +LV   V K+V+ A +  V +R ++  +  + + + FY  N  ++ +    D  N+F    LI++++G  +YH V
Sbjct:  107 AGERSTFKLLVDRTAPFRLLTVEAVTGAHALLLGIIVMTGYFLKTPSSKIKLGIPLIDVGIMALLDTLCILLVFVSGYRVPPTLTVILVQFTLPLTAFLTQFGHPDGLCSLNRKSDQDTRRARNTSNGADGRHTSSTERSPTTSALSSLVNETCTADSDLPPRTAVSGYGGLAKEHVWGSLILFFAVMFALLPAFVTLIDPNEFMYADSIPTRTAINTLLYVSSCVPAAIVTLYKEHVFLQYKQPVNMNYLNLLLATFQFIVASVMSPLLFVLQGLGAHGDWTEQYPSTQFSENYSDGVRCFVGRLSETDQESKYPESAFCDYSLLLVIIHVTSVVLVGVAVDKIVN-AGATKVMYRGVSAGIIVSVLCMHFYDMNIPDFNYGPVIDGLNLFC---LILLILGSEVYHRV 512          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: A0A448YW24_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW24_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.980e-24
Identity = 117/441 (26.53%), Postives = 187/441 (42.40%), Query Frame = 1
Query:   40 GAGFRRLFSKNATAIYSGCLMALIAVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVNRAGERGSMQG-----------------FPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVS----GGFC----------SRRRYPR-------------------KSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDG-----NAHVGQALRDGWRCLVLMRDVVDID-GYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEAEWLH----------DSFNVFTVSGLIVIMIGLRLYHSV 1164
            GAG      K     +   L     +ER++FKL+VDR  PFR V   AV A +A+  G  +L     +G RG  +G                  PV    +MA+LD +H++ + +    VAPT TV+L+Q + P    +S    G  C          S R +P                    + V+G+ VI L   +A+   I        TL D+       P  +          +  YNTIL+V +CLPAA S +YK++   +H +PV    L+  ++ F++VF A+ +P AY L       D      ++  G+ L +G  C   + D  + + G+  +A C     LV  Y  + + V   V K+V+   +  V +R ++  +  +   L  Y+    LH          DS N+     LI++++G  +YH V
Sbjct:  171 GAGGASKRKKCVVFFWFAVLAGSYTIERVSFKLLVDRSGPFRLVAVSAVVAFHALLAGGSLLLSAVWSGRRGEREGPWGSSGAASAPALRALGIPVVDAGLMALLDTVHMMLVFLTGYHVAPTQTVILVQWTLPLTALLSQFFHGDGCVAACLPHQGPSERGHPSAGAGTAAGRPLPGWGGLSIEHVVGSVVISLAVLLALAPSIY------TTLVDNEYFRYASPTKIP--------TQTAYNTILFVSSCLPAAASQLYKEHVFHKHKQPVHQDHLNFVLSVFQLVFAAIVSPLAYVLLGFAASDDWTELYPSSGFGKNLAEGLECFAGVLDEEEAENGFYDEANCRNSFSLVALYAFSVIGVGVAVDKIVNGG-ATKVMYRGVSAGIILSVTSLYLYD----LHIPDFNYGPAIDSLNLVC---LILLVVGSEIYHRV 589          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: K0R956_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R956_THAOC)

HSP 1 Score: 115 bits (289), Expect = 9.930e-24
Identity = 108/427 (25.29%), Postives = 184/427 (43.09%), Query Frame = 1
Query:  112 AVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVV-------LRRVNRAGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVS-----GGFCSRRRY---------------PRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPV---------------HLRGDSGDYAIVEAG------------------------YNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDG------NAHVGQALRDGWRCLVLMRDVVDI-DGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEAE-WLHDS--FNVFTVSGLIVIMIGLRLYHSV 1164
            A ER TFKL+VDR+ PFR    + +   +A+  G+ +           N  G  G   G P+  + +MAVLD ++L+  +++ A V P LTV+L+Q + P     +      G CSRR                 P  +    + +  G    I  P S   +  +    +  S    P                H+ G +  +  +  G                        YNTI+Y LA +PAAVS +YK++ L Q  +PVD   L+L ++ F+++F  + +P AY LQ +G  GD       +  +G     G RC   + D   + +GYP  A C   L LVF + ++ ++V     K+   A +  V +R ++F +  + + +  Y  ++ W       ++F ++   ++++G  +YH V
Sbjct:   33 ASERSTFKLLVDRVGPFRLFSVELILGGHALLTGIGMGLGFLWNRSSSNEHGRNGIGLGLPLADVGLMAVLDTVYLLLAVISGAHVPPVLTVVLVQTTIPLTACFTQCVHPDGRCSRRERQDDTTKSVGRSPNVPPHAANQNGSTVSSGNVHIISNPASDFRSVYSVSFPEISSIPAQPTQVPPPVKGWGGLSKYHIIGTAVMFLAIFIGLTPAVLSLNQILITKKDAMPERTAYNTIIYCLASIPAAVSQLYKEHTLTQLRQPVDRDTLNLVLSIFQLLFAIIVSPLAYGLQGMGA-GDNWTSLYPSKSIGDNFHHGLRCFAGILDESTMKEGYPEPATCRWSLLLVFGHALSIVMVGISCDKL---AAATKVMYRGVSFGIICSVIFMFVYQISDKWCEYGPLVSLFHLTSTALLIVGAEVYHRV 455          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: A0A8K1C4V4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4V4_PYTOL)

HSP 1 Score: 106 bits (264), Expect = 5.800e-21
Identity = 97/371 (26.15%), Postives = 170/371 (45.82%), Query Frame = 1
Query:   97 LMALIAVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVV-LRRVNRAGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRRRYPRKSVLGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDGNAHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNE----------AEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEPE 1176
            L+  +A ERL FK MVDRM  +R+ L Q +   Y   +  +V  +          +  FP +   +M +LD+L+ + + +A  +  P  T+LL+Q S P    +S  F  R  Y R  +LG  V+  G  VA +LP         +L+D              +S ++   E  +NT++Y+LA +P A+S +YK+ A+    +P+D   L+  VT ++ +   + AP  +   VL        H+ Q +  G  CL+  ++ V+ D       C  G+ ++  ++ + +L+N L+ +V+ +  S SV +         +FVVL +Y              W   +  V      + I++G  LY   P+P+
Sbjct:   37 LILAMASERLMFKAMVDRMQSYRYFLCQLMTFLYIPPLFCIVGYKSTQDEFIEEEVTEFPKYHFFVMGILDLLYAMMLFIAGGNTEPMQTLLLMQASIPLTACLSAVF-YRTSYSRVQLLGNFVMAAGLVVA-FLP---------SLNDF-------------NSDNFEDREVAWNTLVYLLAAVPGALSMLYKERAIRD--QPMDMIYLNAWVTVYQFIVGLMVAPVVFDADVL--------HLEQKM-SGLECLINGKNEVETD------HCELGIAILLIFIFSNVLINFLLLQVL-RLTSVSVMNVTTILGFVASFVVLAWYELDPDDFGVRILRNWFSSTTLVLDFIAFVAIVVGKILYQWEPDPD 365          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: A0A024GNR3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNR3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.510e-20
Identity = 108/364 (29.67%), Postives = 164/364 (45.05%), Query Frame = 1
Query:  118 ERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVNRAGE-RGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRRRYPRKSVLGAAVIFLG-ACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDGNAHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEAEWLHD---------SFNVFTVSGLIVIMIGLRLYHSVPEPE 1176
            ER+ FK +VDRM  +R+ L+Q +   Y   +  +V  +  R       M  FP  R   M +LD+ H V M +A  ++APTLTVLLLQ S P     +    +R  Y R  ++GAAVI LG  C  ++LP S ++++  +L                +  D+       N ++Y+ A +P + S +YK+YA+    +P+D   L+  V+ ++ V   L AP    L +L        H  Q L  G  CL+        D       C  GL L+  ++V  + VN L+ K+V +  S SV +     +   +F  L  Y     + +         +     V   IVI IG  LYH  PEPE
Sbjct:    4 ERVLFKFIVDRMESYRYFLSQLMTFVYIPPLFCIVGVKATREDLLEHEMTDFPKIRFFYMGLLDLSHSVLMFLAGGNIAPTLTVLLLQASFPLSTVFAMIMNNRIWYSRVHLIGAAVITLGIGC--LFLPSSLILDSPNSL----------------EQIDFT------NRLIYLAAMIPGSASILYKEYAIRD--QPMDMVYLNTWVSVYQFVGGLLLAPIILDLDIL--------HYHQKL-SGLECLINEDSEGSTD------NCRFGLVLLLLFIVCGVSVNLLLIKLV-KLTSISVTNTTTIAAFICSFGALLTYEMTPRIIELIPTPYWTKAATADVVIASIVIAIGRILYHWYPEPE 325          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: A0A7S1FS84_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FS84_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.950e-19
Identity = 109/455 (23.96%), Postives = 196/455 (43.08%), Query Frame = 1
Query:   40 GAGFRRLFSKNATAIYSGCLM-ALIAVERLTFKLMVDRMAPFRFVLAQAVAACYAVAVGVVVLRRVNRAG-------ERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPF------CLAVSGGFCSRRRYPRKSVLGAAVIFLGA-----------------CVAIYLPI--------SRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAG-------YNT-----------ILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDGNAHVGQALRDGWRCLV--LMRDVVDIDGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVP-----------EPEDPRDSF 1194
            GA     + ++A  ++ G ++ A  A ER  FK+ VD + PFR V+A A+  C+A+A G ++L R+  +G       + GS+         ++ + + LHL+  I+ A  V P LTV+L+Q +AP       CL  +G FC        S     + +LGA                    +++P         S+ ++      D+ R    D   + G    +  V  G       Y+            +++ +AC+PAAVST+YK+  L +  +PVD       +++ + V + +  P AY  Q      D     G  L DG++C+   +    +    Y  +A C   + ++  YV++TLL++  ++K+V    S  ++   +A  V  AF +  +           ++  +  +++ + GL L++ +P           EPED   SF
Sbjct:  216 GAVHHLSWHRDADVLFWGFVLGAAYACERCCFKIGVDLLVPFRTVMAVALTLCHALATGCILLYRIYVSGTLTKKLMKMGSVTYSLFGAAFVITIFNALHLILAILVAPFVPPVLTVVLIQGTAPIIDFFSHCLKKNGNFCCSGDASMVSSSPQPLTWLGANDDGVAGRGGSNSNRGGVDQLHVPSPGCGMNHHSQQLSPSGAHDDEGR----DTQRMIGACVIFVSVVVGLISFILVYDADSNGTSTSIAPLIFTIACIPAAVSTMYKEKVLMEFSQPVDPQFFGFVLSSLQTVLLVILTPLAYSAQGRTFIPDDT---GSNLVDGYKCIFYGVYTSSITAGVYAEEAYCQFSVFIIVGYVLSTLLLSLAIEKLVKLDGSQYIHQGQIAGIVLAAFALQIYDTHQSSEGIGSDIIFLVSIVISITGLELHNMIPQKKMVYETTYPEPEDLYGSF 663          
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Match: F0W243_9STRA (Drug/Metabolite Transporter (DMT) Superfamily putat n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W243_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.020e-19
Identity = 111/390 (28.46%), Postives = 168/390 (43.08%), Query Frame = 1
Query:   58 LFSKNATAIYSGC--LMALIAVERLTFKLMVDRMAPFRFVLAQAVAACYA----VAVGVVVLRRVNRAGERGSMQGFPVWRLAMMAVLDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRRRYPRKSVLGAAVIFLG-ACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYAIVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQVLGRHGDGNAHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYNEA----------EWLHDSFNVFTVSGLIVIMIGLRLYHSVPEPE 1176
            +FSK +  + +    L++ +  ER+ FKL+VDRM  +R+ L+Q +   Y       VGV   R      E   M  FP  R   M +LD+LH V + +A  ++APTLTVLLLQ S P           R  Y R  ++G AVI LG  C  ++ P + ++++ ++L                +  DY       N ++Y+ A +P + S +YK+YA+    +P+D   L+  V  ++ V   L AP    L +L           Q    G  CL+        D       C  GL L   ++     VN L+ K+V +  S SV +         +F  L  Y              W   + +   +S  +VI IG  LYH  PEPE
Sbjct:   22 IFSKESLMVITVIFLLISTMTSERVLFKLIVDRMESYRYFLSQLMTFVYIPPLFCTVGVKATREDLLEHE---MTDFPKIRFLYMGLLDLLHSVLIFMAGGNIAPTLTVLLLQASFPLSTVFEMILNKRIWYSRVHLIGTAVIILGLGC--LFFPSNLILDSPSSL----------------EQTDYT------NRLIYLAAMIPGSASILYKEYAIRN--QPMDMVYLNTWVAVYQFVGGLLLAPIFLDLDLLQY---------QQKLSGLECLINEDSEGSAD------NCRFGLVLFLLFIACGFSVNLLLVKLV-RLTSISVTNTTAIMGFVCSFCTLLTYEMTPRVKEFIPTPNWTKAATSDVVIS-FVVIAIGRILYHWYPEPE 365          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig678.17703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC3_ECTSI1.850e-25797.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEW3_9PHAE3.130e-23695.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1NMU5_HETAK3.380e-3229.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5JRU5_FISSO8.420e-2527.32Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448YW24_9STRA5.980e-2426.53Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
K0R956_THAOC9.930e-2425.29Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A8K1C4V4_PYTOL5.800e-2126.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GNR3_9STRA6.510e-2029.67Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S1FS84_9STRA1.950e-1923.96Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
F0W243_9STRA2.020e-1928.46Drug/Metabolite Transporter (DMT) Superfamily puta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig678contigEcto-sp13_S_contig678:7929..16703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score727.2
Seed ortholog evalue4.1e-207
Seed eggNOG ortholog2880.D8LNC3
Model size2002
Hectar predicted targeting categorysignal anchor
Exons10
EggNOG free text desc.CRT-like, chloroquine-resistance transporter-like
EggNOG OGs28N84@1,2QUTE@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004390.1
Cds size1236
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig678.17703.1prot_Ecto-sp13_S_contig678.17703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig678 7929..15269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463931.6281111-CDS-Ecto-sp13_S_contig678:7928..79971681463931.6281111-CDS-Ecto-sp13_S_contig678:7928..7997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 7929..7997 +
1681463931.6401098-CDS-Ecto-sp13_S_contig678:8289..83841681463931.6401098-CDS-Ecto-sp13_S_contig678:8289..8384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 8290..8384 +
1681463931.6500075-CDS-Ecto-sp13_S_contig678:9883..101441681463931.6500075-CDS-Ecto-sp13_S_contig678:9883..10144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 9884..10144 +
1681463931.6600606-CDS-Ecto-sp13_S_contig678:11512..116971681463931.6600606-CDS-Ecto-sp13_S_contig678:11512..11697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 11513..11697 +
1681463931.6711729-CDS-Ecto-sp13_S_contig678:12520..127041681463931.6711729-CDS-Ecto-sp13_S_contig678:12520..12704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 12521..12704 +
1681463931.6865592-CDS-Ecto-sp13_S_contig678:13012..131111681463931.6865592-CDS-Ecto-sp13_S_contig678:13012..13111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 13013..13111 +
1681463931.7004626-CDS-Ecto-sp13_S_contig678:13653..137611681463931.7004626-CDS-Ecto-sp13_S_contig678:13653..13761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 13654..13761 +
1681463931.7122724-CDS-Ecto-sp13_S_contig678:14464..145431681463931.7122724-CDS-Ecto-sp13_S_contig678:14464..14543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 14465..14543 +
1681463931.7220657-CDS-Ecto-sp13_S_contig678:15113..152691681463931.7220657-CDS-Ecto-sp13_S_contig678:15113..15269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig678 15114..15269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463931.7316837-UTR-Ecto-sp13_S_contig678:15269..152941681463931.7316837-UTR-Ecto-sp13_S_contig678:15269..15294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig678 15270..15294 +
1681463931.7422628-UTR-Ecto-sp13_S_contig678:15962..167031681463931.7422628-UTR-Ecto-sp13_S_contig678:15962..16703Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig678 15963..16703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig678.17703.1

>prot_Ecto-sp13_S_contig678.17703.1 ID=prot_Ecto-sp13_S_contig678.17703.1|Name=mRNA_Ecto-sp13_S_contig678.17703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=412bp
MEEGQLLLENSHPGAGFRRLFSKNATAIYSGCLMALIAVERLTFKLMVDR
MAPFRFVLAQAVAACYAVAVGVVVLRRVNRAGERGSMQGFPVWRLAMMAV
LDMLHLVPMIVAAADVAPTLTVLLLQCSAPFCLAVSGGFCSRRRYPRKSV
LGAAVIFLGACVAIYLPISRLINARATLHDDARSHEYDPVHLRGDSGDYA
IVEAGYNTILYVLACLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEV
VFIALAAPAAYQLQVLGRHGDGNAHVGQALRDGWRCLVLMRDVVDIDGYP
VDAECWGGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTA
FVVLCFYNEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEPEDPRDSFDP
PSPPDGKRYGG*
back to top

mRNA from alignment at Ecto-sp13_S_contig678:7929..16703+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig678.17703.1 ID=mRNA_Ecto-sp13_S_contig678.17703.1|Name=mRNA_Ecto-sp13_S_contig678.17703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8775bp|location=Sequence derived from alignment at Ecto-sp13_S_contig678:7929..16703+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAGGTCAGCTGCTCTTAGAGAACAGCCACCCAGGAGCAGGATT CCGGCGCTTGTTCTCCAAGGTGACACTGGTTTCTTCAACCCAAGGCGAAC ATAACATTTTACTGAGACGTTATTCCAGTTCAGAACCTTCTCCCTTCAAC TCTCTTCCGATTAGACTGGAAATGACCCTTCGAATTGCTGCCGAAGAGAC CGGGCTCCCTCTCTTCTCGCCCGTGATGTGTATGCTGTGCCTCTCTCTGC TCTGGGCTCCCTCTCTTCTCGCCCGTGATGTGTATGCTGTGCCTCTCTCT GCTCTGCACCCACCTATGCCGTCCTCTACTGCAACTGCTACTTGCGGTCA TCTGCTCACAGAATGCGACGGCCATCTACAGCGGTTGCCTCATGGCCCTG ATCGCCGTGGAGCGATTGACGTTCAAGCTCATGGTCGACAGAATGGCCCC CTTCCGGTGAGTCAAGGTCAAGCGATGCCCTCGCCAACAGACCAGCTCGG GGTATCGGCGTCAAAGTCGTGAAACACGAGGGGGTTTGTGTGTGTGTTTC TTTTCCTGTGGGTGGCAGGTACTACAGTTGTAGCAGCAGAGTTGAATTGC CCCTTGACCTTCCGTGTTCATGTTACCGGAAATGCGCGCGTGTGCCTCTT GGCTGGCTACCGTATACGACATGAGATTTCACATCCCCTGGACCGATTTT CAAAGCTCGATTTCTCAACAGCAGAAAAACTTACAGCGCCGAAAACGGCG GCGTTGAAGCCGTGTTGTCGAGAGCTTGCCGAAAATGTATCGTTTCGTTT ATGCATGTTCCTCGTCGTGCAGTAATCGAGCTTTGAAAATCAGTCCGAGG GGTGTGTTATCTTGTGTCGTATACGGTACTCTTGGCCCACACGTCGCACT TTGGTTTCATGTCGTCACGGATAGCAAATACTGCCGCATCTTGTTGTTGT TGTTGTTGTTGTTGTTGTCTTCACATTACCTACCGTTCTGGTCTCCGCTC AGTACCTTGTAATGTCCGAACTGGTCCAACTGACGCGGACGCCTTCCGTG GTCATAAGCAAACTGCCTCCAAATCTGCAAGCAAAACAAAGAACCAAGGC TGTTGTCTACATGTAGAGATTTGATCCTCCAGGGTGTTGTTCCCCGACCG ATCATGGGTGCCTTCTAGCTAGTACCTGCAATGGTGTCGCACCTGATTCT GAGTTCTGCTACAGTGAAGTTTATGTACATGAAGGTTGTATGCTTGCGGC AGCAGGCGACATATCTTACTCTACAACTTAGAGCAGTGGTGTGACGGGGA AAGAACGGTGTTCGGTCCTTCACGAGCGACCCTCTTTCTTTTCGGGGGTC TTCTTGAGTTTCCAAGCATTTTTCAGCGAGGTGATGACATGGGTGGTTTC GGGCGAAGCTTTGGCAGTTATGAACAAAGCACTTGCAGGATGGAAACGTA TATACCCTTTCCTCTCCTTCGGGTTCCCGGCGTTCACCAACCTGTCAAGC AAGAACTCCTCTTGATGGACTTTTAAGGGCGTCGACAAACAAGAGAGCAC CCGAGGATTGGCGGCATCATCTCTGTCAGGAGTAGACTCGAGTGCTCCGT CCCGAGTGCTCCCCCCCCCCCCCCCCCTCCCGGCGTGCGATGATCAACCT GCTGCGGCTGCACTGCAATAGGTACACAACCATCACCGCCGTAGCCTGTT TTCTCAGCACCCTGAACGCGGCGGCAAACAAGCAGCGAGATAGAGCCGGT GCCCAAGTCCAAGCTCCGTCCCGACCACCTCTCATCCCGACCAAATATAT TTCACCAAGGCGAACTCACGGCGACCAGACCCAAAACCAACAGTTTATTT GAAAATACTCCTCGTCAGCCCCACACGACGTACATGCAACCAAGGCGAAG GCAAACCAGACCCCGAAAAATGTCAAATCATTGGAAAAAAAAACGCCTCC TCCAGGTTTGTCCTGGCGCAAGCGGTGGCCGCATGCTACGCCGTCGCCGT CGGAGTCGTCGTCCTCCGACGTGTCAACAGAGCCGGGGAGAGGGGCAGCA TGCAGGGATTCCCGGTGTGGAGGCTCGCCATGATGGCCGTGCTGGACATG CTGCACCTGGTGCCTATGATCGTCGCGGCCGCGGACGTGGCCCCGACGCT GACGGTGCTCTTGCTGCAGTGCTCGGCGCCCTTCTGCCTCGCGGTCTCCG GTGGATTTTGCTCGAGGTATGCTAGCTCTACAGCAGTACCTTGTGGTTCC CAATATATTGCGGGCTAGTGACAAGACAAGAATCGCTGCGTTGTATTGCG ACCCGCGCTTTTGGGGGAGGAAGGCTCCCAAAAAGTAGCGGGCGAGGTTA CTGTGCGAATGATAGTTTACTCGATGTATTGGGAACCTCGCTTTCCCGAC CGCGATATATCGAAACCACTAGCGTAGTTTTGTGGTGGTTTTGGTCGGTG TATGTAAAACTAAGGCAAGCAACGCAGGGGGAAAGGTGGGGCAAAGAAAA AAGAAAAAATCAGAAATGCTCCCGTGTGGCCTTGCTCTGTGTGACCCCGG CTGATATGCCAGGAATATACGCCGAAAGGCCTATAAACGGGCGCCAGAAT AGATGGGACGAAGACACACGCATACGCAATATTTTGAGTCGTTTAGAGAA TATACCTAGCATCACCGAAATGCCACCGTTCGAGATGTATCCAGTCGAAG GGGGTGTGTTTAAGTCTTTGCTGTGAGTGGGAGGAAAACCAGCTGGATAC TTTGCTTATATAAGCCCAACACTTAGCAAGCCGAACACTGAATTTTTGTC AGTGATTCCAGCTAGTGCTAAAGCGCAAGAGCACCTGTAGGTATCACTAA GTGTTCGTTTTTTGTTGCTTGCTGATTGGTTGGGGGCAGGTTGTCGTAGC GCGCTGTCAAGGTCTCGACATGTTGCGTGAACTCCACGATTCTCTGCGGC ATTCCCCGTCTTGGATTGCAGGAAGGTAGACCCAACCAGATGCGTAGGCT TGCGCCTCCGGCGGCCTGTGCAGCCGAGCACGACACCGCTACTGCTTTCT TTGGATGCAATCACTCACTTTGTTGGCCTCCTCGTGTTTTGTGGCTCTTG ACAATGGGGTGAGCTGGTGAATACGAAGCAACGTTTTCGAAGTTGACGCT GGTGAAATGTCAATCCCTACAAACATTTTGCATCGAATAAAGGCACTCCC CGAACATGTTTTTGCCTTGAAAATTGTCTCGAATGTTGGTAATATTTGTC TTCTCACCCCCAGTTCCTCCACCTGTTTCATGAGGGAATTGTCGCAGGCA ATTGGTCTCCTGGTGATGGAAATGATGAGCTTAAATTCATGTACATGGGC GGCTTTGCCCCTTACAAGCCCTCGCCTGTTTCTCTGCAAGGCTGCTACTT TCGTGTTTCAGGCCACCGCTTGGCCGCCTCCGATCGTTCAACCAAAAAGT ATGTGAGCTCTCAAGATCTGATGGTTGTAATTTCTACTAATTTTTTGTTG CTGTTCCCCGTCCCCCTTCTCTTGTTGCTCCCCCTCTTCCTCGTTTCTCT CTCTCCCCCCCCCCCCCGTCTCTGCTCGCTTGAGAAGGCGATACCCCCGA AAGTCGGTGCTCGGGGCTGCGGTAATATTCTTGGGCGCGTGCGTGGCGAT ATACCTACCGATCTCTCGGCTGATCAACGCGAGGGCCACGCTGCACGATG ATGCCAGGAGCCACGAATACGACCCGGTGCACCTGCGGGGGGATAGCGGC GACTACGCCATCGTAGAAGGTGAGGGGAGGGGGCACCCTTCTTCATCGTG GGTTTGTGTTCGGGCTGTGGGGCTCCTTCCCGTGCCCTGGATACGATGCG AGCGAACGTCGAGCTTTCTCATCGCTTGCCAAATTCCTTGCTTCACGGAG GGATGTTTTTTGGGGCGGGAGGCTGCGCGGTTTTCCCGGAGAGTCTTGCG TTGGGTGTGTGCTCTACAGCGGTTTTCACGCCCTTCGCAGGGCGATTTGA CGGCATCCTTTCTCGGTGCACAACGTGCGGGTTAGTGCCGCTACTGCTTG GGTGCCTGAGTGGGCGGCGGTGGCGGTGATAGGAAGTGAACCATCGTTTG GTGGATGGCGGGAGGGGTTGCAGATGGACCGGAGACTGCGGGAACAGCAA ATTCGGTTGTTCTGTTGTGTTTTCGCGTGGCACTCCTTGCCGTTGATGTC CACGCTGAGGCAGAGGTCTGACTATGTCTCTGAGCGATGAGGGAAGTTTG GTTTGATACGGTAAGAGGGAGGGAGGGGGGTTGAGAACATGATTTTCGAG ACAGCCCGGGCAAGTTGTCTCTCAGCAGTGCAAGGGAGTACGTGGACATG GGAGGCTTTCGTCGATTGTGTTTTTGAGGAGACCGGATTGAAGCGCGCAC TCCGTCCTGACCACCGCCGTCATGGTGCCTAGACTTTGTTCGGCCCGCTC TGAGACATAATTGTACGGGTCAACAACACGGAGGACAGAGCTCACCTTGT CGGAGCCTTGGCTTTGTCTCGTGATAGTGTACGGGTCCACAACACAGAGG GAAAAACTAGGCTAGTCCGCGCTCTGTTTTTTTTTTTGCAAGCAGGGTAC AACACCATCCTGTACGTGCTGGCGTGCCTGCCGGCGGCCGTCTCCACGGT GTACAAGCAGTACGCCCTGGAGCAGCACGGACGGCCGGTGGACGCGCACC AGCTGAGCCTCGGGGTGACCGCGTTCGAGGTGGTGTTCATCGCGCTAGCG GCGCCGGCGGCGTACCAGCTTCAGGTGTGTAAATTGCTGAGCCCCCCTCG GGCGCGTGCGCGCGACCGTTTTTTTGTTCGAAGTTGGACATCGCGTCCTC ACCTCAGGGTCGTTTTGTTGGCGTCGACTGTTAGGTTGTTTAGTGATGCT GTTGGCAGACCGGTCGACGTTAAGCTGCCGTTTCTTCGATACTGCTCCGT CTTGCGGACCCAAGAATCTGCCGTACGTTTTCCTTTCACCGCCGCCGCCT CCGCCTCCGCCCACCCACCCACCCACCCACACCGACACGCTGCTATCCAC GATGACGATAACCGCGTTTGTATTTTTGGCAGAGCTTGGGTAGACACGGA GACGGGAACGCGCACGTTGGACAGGCGTTGAGAGACGGCTGGCGTTGTCT CGTGCTCATGAGGGATGTCGTCGACATCGATGGGTGAGAAACCTCTTATT GTCGGCCTCACCAGCTAAGCGTTTGCTTTTAACATGCTTTTCTGCTCCTC CGCCTAGTACCCGTGTCTATACCACCGTCTGGTCGTCAGAAAGACAAAGC GGCGTAGGCAGGGATGCGGAGGGTCTGCGTGACGTTACACTTCAATAACA AGCACACCGTACGTCCTGTTAAGCGCGTTAGGAATACGGCTGCCTCCCCG TATGCACCGGTGGGAACGTAGCGGGCACGTCCTCTACACGCTCGGTACTG TCGTGCAGGGTCCCGGCTTGTATGTGCTCTGTCCACGCTATTCCCGAGCA GTCTTGGTCACCGTCCCCGCATGGCCGGGCATTTCGCGCCCCGAACCCGG CGCCTTTCTCCGAAGGCTCTTGCGAAACTCGGCCGGTCGTTTCTTGTGGT GTGTTCTGTTGCGCCAGCTTTTACCATGATGTGCCGCTGAACTTTTCGCT GCTCTTTTTTTTTTAATCTCGTTTTGTGTCTTGTCTTCTCTTTGTTGGTC TTATGTGTTTGGCAAAATCTTGTAGCTATCCTGTTGACGCGGAGTGCTGG GGAGGGCTGCCGCTGGTGTTTTCCTACGTCGTGGCCACTCTTCTGGTCAA CACGCTGGTCCAGAAGGTCGTCGACCAGGCAGAGTGAGTGTCTTTTTTGC TCATTGTTTTTTTAACGCGACTGGGTGGTGGTTTCTGTTGAAATATCAAC CGCGCCACCGGCGGCCCTTTTCTGAGAACAGCCTACAGTACATGTAAGTG GGGATAGTAACCTCGTTTGGAGGAGGTGTGTACCGTATTCCTCGCTGAGA TTGGCCGCGCTACTGCTGTACGTATCTTGCTGGCCAATGAACAAGGTTTC AATTCGAAACAACTTCTACCCCACCTCAGCTGTTGTCCGCATTGAGGGTG ACCCAGCTCCCCGCGCCTACCTTCGGCGGAACACTGTTGCGAGGCGTTCA ATCATCGGGTGCGCAGAAGTACGCTGCTTGGCTGTCCAGGACAGCACCGC TGCTCATGTAGCCGTTCGGGTGTTACAATTTTGTGTTCCTTGGTGTGCTT TCCCGGGCGTATCCTTCTGCGACGGCGAGGTGTTCGCTCCTGTTGTTTTT CGTATGCCCTCTCCTGGGTGAATCCATGTCCAGTGCTGCTGCTGCTCTTG CTGCTGCTGCTGTGGTTATTGCTTGCCACCATTGATGGTGTTGCTGTTGC TACTGTCGTTGCTGGGGATAACCCGGGGGTCGACAGTCTCCCGTTTTGGC GCGGCTAGTTCAATCACGTTTGCCGTCCGCTTCTCCTCTGCCCGCCATTT GCTGCTGCCGCCTCGACCTCTCTTTCTGCCGCGCAGGTCGGCGTCGGTGT ACCACCGCGCCATGGCGTTTTCCGTACCAACGGCCTTCGTAGTCCTGTGC TTCTACAACGAAGCCGTGAGTTTTCTAGTTGTTTTTGCGTTTGTTGGAAG TGATTTTGCGGAAGCAAGGACGATCGACGTCGTCGTGTGGCGCTGTGCGC GTGGCTAATGGGTTGGTGTGTCCGTCCGTCGCTCTGCCATTGTTGTTGTG ATGGTAACGATCGTGTTGTGTTCGATGGTTGATAACGTTAATTCGTGATG TGGCATCTTCGTGCTGATTGTTGGAGGCCTGTGTCGTTTGGTCGTTTTAC CCCCGTGCAGTCTTTCCGAAAACACCGAAGATGTCTTGTCAAATCGAAAC GACAACTCAAAAGTTGGAATTCATTGTTGTTATGATGGTGGGGTGTCGTT GCATTCTGTTTTTTTTTGTTTGCGTCCATGTCGAAATGAAATGTTTCTCG GTCTTAGATGGTGGATGCTAGCCTCTTTGCTTCCACCTCCTCCTCCTATC TCCTCGAATTGTTTCAATCGGTCTCTACAAGACTTTTGCCTCCTGTTGCT CAAGCACCCCCTGTCTGCTACCCCTCTCTTGGCCATGCTTCTCCACGTGT GCTCTGCTTTTCCGCCTCCCTTCTCGTCCCCCCAGGAGTGGCTGCACGAT AGCTTCAACGTGTTCACCGTTTCGGGCCTCATTGTGATCATGATCGGCCT CCGGCTGTACCACTCCGTGCCCGAGCCGGAGGACCCCCGGGATAGCTTCG ATCCACCGTCACCCCCTGACGGCAAGCGCTACGGCGGCTGAACGGAGCCT ATGTAGGTATCAGCTGGTAGGTATGCAGGCGGCTACCCTGGTCGTTTTTT CTTGTTTTTTTTTTATCATTGGAGTACTTTTAATTAGCGCTCACAGCTGA CAGCAGGTTAGGAGCTCCCATCCGTGGTAACGCAGAAGGGTGACTTTCCC TCCATCCCCTCCTGTGATGCTTGCCTCTCGTTTCAAACACGAGAAGGTTG GATTTACTTACAGTGGCGGCTACGTTTTTAAAGAGAGTCAAACTTGCTTG TCACGACCATGAGGAATACATACGTTGCACAGTACGGTTAAAGAGAACAC CGGATTTAAGGGAGAAATCCTCGCTTGTCACGACCCTCTCTCCAACCGTG GCCGCCACAGTATCGGCTTGATCCTACGTTTGGCGTTTGTTGTTCTTTGC GTCGTGTGGCCTGATCTGATCGATCTCCTTCGTTATGTTCCCTGAAAAAG TCTATTTAATTTCGAGAGAAAATTCGAGTTTTGTTTACTCCTTGTGTGGC CGTTTCCTTCTGTGTTACCCCGGCTGGTGCGTCCAGAAAATTGATCCGAA AGGTGAACAGCAAGGCCGATGTCAAGGGTGTACATGTGATGTCTTATGCG AAACAGATGGGTTGATTCCTTTTATGCCCCAGACTGAGCAACAGCCTTTG TTTTACGCCCCTGCGTCCACTGCCCCCCTCCAAGGACACAGCTGTGTGTC GACTCAGGTTGAACGGGAGGAAAGCCGTGGTTCATGGCATAGCTGCTCGG GTCCGGGAGGGACAGGGGTCGTTGGTCGAAGGTGACAACGAGGTGCCTTC GTGTACTATTCGTGTTTTTCTAATTTTTACCATGGTTGGTTTGTCAGTTG CGGCGCAAGAACGACAGGCCAGAAGGCAATCTCTATCGTGTGGTGTGTGT AGAGGGACGAAGGCGTTTTGCGTGTCTACGCCCACCTAGAGGAGTCGGAG ATGTTTCAGAACGCTTTGCCGCGCGGAGAAGAACGACGTCTAAAGGCATT TTTATGCCTCTAAAGGCGTATCATGCCCAAGTATTCGCGGCGTTGTGGGA GGGCTCTCAGTTTGGTCCGGAAGCCACGGTCCTCTCACCCCGAAAGGCCT CTGGGGCTGGTGCACGTTTTGTGTCTGGACTAAGTACGCTGGAGTGCAGC ATCTTGCCGGTGTGCGTTGCGTAAGCAGGTCGCCGTTCTGTGCCTGATGA CAACTTTTTTTTCTATTTTTCGACGCCCTTCTCTTTGTTCTTTTTCTTTG TTTGGTGGTTTGGTGTTTTTTTTTATTGTTGTAGACCGACCGGCCTGTGC ATATGGGCCGGAAATTGTTCATTTCACACCATGGTTTATTTTCGCTACCC CCTTGTTTGTTCAAGTGGGATCAAGTGGGATCAAGTGGGATTTCCCTGCT TCAAGGCTTGAGCTGTTTGACTGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig678:7929..16703+

>mRNA_Ecto-sp13_S_contig678.17703.1 ID=mRNA_Ecto-sp13_S_contig678.17703.1|Name=mRNA_Ecto-sp13_S_contig678.17703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1236bp|location=Sequence derived from alignment at Ecto-sp13_S_contig678:7929..16703+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAGGTCAGCTGCTCTTAGAGAACAGCCACCCAGGAGCAGGATT
CCGGCGCTTGTTCTCCAAGAATGCGACGGCCATCTACAGCGGTTGCCTCA
TGGCCCTGATCGCCGTGGAGCGATTGACGTTCAAGCTCATGGTCGACAGA
ATGGCCCCCTTCCGGTTTGTCCTGGCGCAAGCGGTGGCCGCATGCTACGC
CGTCGCCGTCGGAGTCGTCGTCCTCCGACGTGTCAACAGAGCCGGGGAGA
GGGGCAGCATGCAGGGATTCCCGGTGTGGAGGCTCGCCATGATGGCCGTG
CTGGACATGCTGCACCTGGTGCCTATGATCGTCGCGGCCGCGGACGTGGC
CCCGACGCTGACGGTGCTCTTGCTGCAGTGCTCGGCGCCCTTCTGCCTCG
CGGTCTCCGGTGGATTTTGCTCGAGAAGGCGATACCCCCGAAAGTCGGTG
CTCGGGGCTGCGGTAATATTCTTGGGCGCGTGCGTGGCGATATACCTACC
GATCTCTCGGCTGATCAACGCGAGGGCCACGCTGCACGATGATGCCAGGA
GCCACGAATACGACCCGGTGCACCTGCGGGGGGATAGCGGCGACTACGCC
ATCGTAGAAGCAGGGTACAACACCATCCTGTACGTGCTGGCGTGCCTGCC
GGCGGCCGTCTCCACGGTGTACAAGCAGTACGCCCTGGAGCAGCACGGAC
GGCCGGTGGACGCGCACCAGCTGAGCCTCGGGGTGACCGCGTTCGAGGTG
GTGTTCATCGCGCTAGCGGCGCCGGCGGCGTACCAGCTTCAGGTCTTGGG
TAGACACGGAGACGGGAACGCGCACGTTGGACAGGCGTTGAGAGACGGCT
GGCGTTGTCTCGTGCTCATGAGGGATGTCGTCGACATCGATGGCTATCCT
GTTGACGCGGAGTGCTGGGGAGGGCTGCCGCTGGTGTTTTCCTACGTCGT
GGCCACTCTTCTGGTCAACACGCTGGTCCAGAAGGTCGTCGACCAGGCAG
AGTCGGCGTCGGTGTACCACCGCGCCATGGCGTTTTCCGTACCAACGGCC
TTCGTAGTCCTGTGCTTCTACAACGAAGCCGAGTGGCTGCACGATAGCTT
CAACGTGTTCACCGTTTCGGGCCTCATTGTGATCATGATCGGCCTCCGGC
TGTACCACTCCGTGCCCGAGCCGGAGGACCCCCGGGATAGCTTCGATCCA
CCGTCACCCCCTGACGGCAAGCGCTACGGCGGCTGA
back to top