mRNA_Ecto-sp13_S_contig67687.17689.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67687.17689.1
Unique NamemRNA_Ecto-sp13_S_contig67687.17689.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67687.17689.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 9.490e-8
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1 
Query:    4 MSGVLFEDIFEVGKLNPDGKKFDR 75
            MSGVLFEDIFEVGKLNPDGKKFDR
Sbjct:    1 MSGVLFEDIFEVGKLNPDGKKFDR 24
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BLAST of mRNA_Ecto-sp13_S_contig67687.17689.1 vs. uniprot
Match: A0A5B7GA25_PORTR (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7GA25_PORTR)

HSP 1 Score: 47.4 bits (111), Expect = 2.420e-6
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    4 MSGVLFEDIFEVGKLNPDGKKFDRGENT 87
            M+G+LFEDIF+V  ++PDGKKFDRGE T
Sbjct:    1 MTGILFEDIFDVKDIDPDGKKFDRGEIT 28
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BLAST of mRNA_Ecto-sp13_S_contig67687.17689.1 vs. uniprot
Match: UPI00063FB817 (uncharacterized protein LOC105835354 n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063FB817)

HSP 1 Score: 45.8 bits (107), Expect = 4.320e-5
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 MSGVLFEDIFEVGKLNPDGKKFDRGENTGSFLVGESSQ 117
            M+GVLFEDIF V  ++P+GKKFDRG +  ++L   +S+
Sbjct:    1 MAGVLFEDIFNVKDIDPEGKKFDRGIDISTYLSRRTSR 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67687.17689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM46_ECTSI9.490e-8100.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A5B7GA25_PORTR2.420e-671.43DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI00063FB8174.320e-552.63uncharacterized protein LOC105835354 n=1 Tax=Monom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67687contigEcto-sp13_S_contig67687:86..202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.3884451-CDS-Ecto-sp13_S_contig67687:85..1991681463930.3884451-CDS-Ecto-sp13_S_contig67687:85..199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67687 86..199 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.400909-UTR-Ecto-sp13_S_contig67687:199..2021681463930.400909-UTR-Ecto-sp13_S_contig67687:199..202Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67687 200..202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67687.17689.1prot_Ecto-sp13_S_contig67687.17689.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67687 86..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67687.17689.1

>prot_Ecto-sp13_S_contig67687.17689.1 ID=prot_Ecto-sp13_S_contig67687.17689.1|Name=mRNA_Ecto-sp13_S_contig67687.17689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MSGVLFEDIFEVGKLNPDGKKFDRGENTGSFLVGESSQ
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mRNA from alignment at Ecto-sp13_S_contig67687:86..202-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67687.17689.1 ID=mRNA_Ecto-sp13_S_contig67687.17689.1|Name=mRNA_Ecto-sp13_S_contig67687.17689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67687:86..202- (Ectocarpus species13 EcNAP12_S_4_19m)
AATATGTCTGGGGTGCTCTTCGAGGATATCTTCGAGGTGGGGAAGCTCAA
TCCAGATGGAAAGAAGTTCGACAGAGGTGAGAATACAGGTAGTTTCTTGG
TTGGTGAATCCTCTCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67687:86..202-

>mRNA_Ecto-sp13_S_contig67687.17689.1 ID=mRNA_Ecto-sp13_S_contig67687.17689.1|Name=mRNA_Ecto-sp13_S_contig67687.17689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67687:86..202- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGGGTGCTCTTCGAGGATATCTTCGAGGTGGGGAAGCTCAATCC
AGATGGAAAGAAGTTCGACAGAGGTGAGAATACAGGTAGTTTCTTGGTTG
GTGAATCCTCTCAA
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