prot_Ecto-sp13_S_contig6765.17686.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6765.17686.1
Unique Nameprot_Ecto-sp13_S_contig6765.17686.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length318
Homology
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: D7G3P0_ECTSI (Integrins alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P0_ECTSI)

HSP 1 Score: 552 bits (1423), Expect = 1.630e-197
Identity = 289/311 (92.93%), Postives = 299/311 (96.14%), Query Frame = 0
Query:    1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRL 311
            MTL VVC ARRGVIEAGFFLSALL PLAAAAGTFQ NVNASSSPRIYNASE+NEDWLGYSCAS+GDVNGDSLMDV+VG+YGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSI++ELYAKL+SDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAV QGHTYLVFGGAGLP RVNLTESDDVTGGNEGVVVFKGALT E   SGFSVSGGFDMNGDGLSDF+IGAPEGGT GEFDGEAYV+FGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG RL
Sbjct:    1 MTLFVVCPARRGVIEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIGDVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALTDE---SGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGRRL 308          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI)

HSP 1 Score: 549 bits (1414), Expect = 4.080e-192
Identity = 286/308 (92.86%), Postives = 297/308 (96.43%), Query Frame = 0
Query:    1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            MTL VVC ARRGV+EAGFFLSALL PLAAAAGTFQ NVNASSSPRIYNASE+NEDWLGYSCAS+GDVNGDSLMDV+VG+YGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSI++ELYAKL+SDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAV QGHTYLVFGGAGLP RVNLTESDDVTGGNEGVVVFKGALT E   SGFSVSGGFDMNGDGLSDF+IGAPEGGT GEFDGEAYV+FGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG
Sbjct:    1 MTLFVVCPARRGVVEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIGDVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALTDE---SGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 305          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A6H5L9N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N8_9PHAE)

HSP 1 Score: 531 bits (1369), Expect = 6.950e-188
Identity = 297/397 (74.81%), Postives = 306/397 (77.08%), Query Frame = 0
Query:    1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGD-------------------------------------------------------------------------VNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGE------------VYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF 312
            MT LVVCLARRGVIEAGFFLSALL PLAAAAGTF+ NVNASSSPRIYNASEINEDWLGYSCAS+GD                                                                         VNGDSLMDV+VGAYGSSHLSEGAAHVVYGTNTSAAYD+SFLDLGAG GGGLDGVDGFTLSGMSI++ELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDV GGNEGVVVFKGALTGE            + ESGFSVSGGFDMNGDGLSDF+IGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF
Sbjct:    1 MTFLVVCLARRGVIEAGFFLSALLCPLAAAAGTFRSNVNASSSPRIYNASEINEDWLGYSCASIGDFNGDGVGDIVIGAPGASDGVGRAYVVYGNSSGIDEDFDVSALEDRDSAGLVMTGRQGGTFSHSIGYAVAAAGDVNGDSLMDVMVGAYGSSHLSEGAAHVVYGTNTSAAYDSSFLDLGAGDGGGLDGVDGFTLSGMSIEIELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVAGGNEGVVVFKGALTGEFVIICGFHDLCSIDESGFSVSGGFDMNGDGLSDFIIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF 397          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A2R8C5B0_9RHOB (Uncharacterized protein n=2 Tax=Falsiruegeria TaxID=2854184 RepID=A0A2R8C5B0_9RHOB)

HSP 1 Score: 129 bits (325), Expect = 7.110e-30
Identity = 99/259 (38.22%), Postives = 146/259 (56.37%), Query Frame = 0
Query:   55 DWLGYSCASVGDVNGDSLMDVIVGAYGSSH---LSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGG-AGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            D+ G S +S GDVNGD + D+I+GAYG++       G ++VV+G+   A + A+ L L +     L+G +GF + G++                  S  ++G  +SSAGDVNGDG GD+++G+  AG+  +G +Y+VFG  AG    + L++   V  G E     +G L G    SG SVS   D+NGDG+ D +IGAPE    G+ + GE+YVVFG  +     TV+  + LDG+ GF I G + D  AG+SV+  G
Sbjct:   62 DYSGGSVSSAGDVNGDGIDDLIIGAYGAAGGATSQAGESYVVFGST--AGFGAT-LPLSS-----LNGANGFVVQGIA------------------SYDFSGGSVSSAGDVNGDGIGDLIIGASGAGSSREGESYVVFGSTAGFGATLPLSDLWQVRNGFE----IQGQLNGN---SGASVSSAGDVNGDGIDDLIIGAPEAEVGGQREVGESYVVFGSTSAFP--TVLYASSLDGSNGFVIEGANSDDTAGNSVSSAG 285          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A6J4PLY3_9RHOB (RTX toxins and related Ca2+-binding proteins (Fragment) n=1 Tax=uncultured Rubellimicrobium sp. TaxID=543078 RepID=A0A6J4PLY3_9RHOB)

HSP 1 Score: 124 bits (310), Expect = 9.050e-29
Identity = 106/260 (40.77%), Postives = 142/260 (54.62%), Query Frame = 0
Query:   55 DWLGYSCASVGDVNGDSLMDVIVGAYGS--SHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAG--AVSQGHTYLVFGGAGLPGR-VNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLD-TDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            D  G S AS GDVNGD   D+I+GA G+  +    G+A+VV+G   +  + AS L LG+     LDG++GF L G++           DT          G  +SSAGDVNGDGF D++VG+P+AG    + G TY+VFG AG  G  ++L   D  TG       F+    G   ++GF+V+   D+NGD L D MI AP  G  G F G AYVVFG+   AD  T +L+ T L+GT GF + G       G+S+A  G
Sbjct:   27 DAAGRSVASAGDVNGDGFDDMIIGAPGADPNGSQSGSAYVVFGK--AGGFGAS-LSLGS-----LDGMNGFRLDGVAA---------GDT---------AGQSVSSAGDVNGDGFDDLMVGAPSAGPNGSALGTTYVVFGKAGGFGASLDLGSLDGTTG-------FRLNGLGAYEQAGFTVAPAGDVNGDDLDDMMIAAPGSGLAGYFFGSAYVVFGK---ADGFTAILNPTSLNGTNGFRLDGALGFESLGTSLASAG 250          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001F3C3DBB (hypothetical protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=UPI001F3C3DBB)

HSP 1 Score: 125 bits (314), Expect = 3.040e-28
Identity = 98/262 (37.40%), Postives = 139/262 (53.05%), Query Frame = 0
Query:   54 EDWLGYSCASVGDVNGDSLMDVIVGA-YG--SSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            +D+ GYS +S GDVNGD   D+I+GA Y   + + + G+++VV+G  TS   +  F DL       LDG +GF L G+                      Y+G  ++SAGDVNGDGF D+++G+       AV+ G TY+VFGGA  PG   + +   + G N   V   G +  +  ESGFSVS   D+NGDG  D +IGAP   + G  + G +YVVFG      +  +   + LDGT GF + G     Y+G+SV+  G
Sbjct:  622 QDYSGYSVSSAGDVNGDGFDDLIIGARYADPNENNTAGSSYVVFGGATSPGSNGIF-DLST-----LDGSNGFRLDGLDAN------------------DYSGGTVASAGDVNGDGFDDLIIGARAGDPNSAVNSGETYVVFGGATAPGVDGVFDLSTLDGTNGFQV--NGVIATD--ESGFSVSSAGDVNGDGYDDLIIGAPLADSNGNPNTGVSYVVFGGATAPGASGMFDLSTLDGTNGFRLNGVDASDYSGASVSSAG 855          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001989DBF6 (FG-GAP repeat protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI001989DBF6)

HSP 1 Score: 125 bits (313), Expect = 3.850e-28
Identity = 94/262 (35.88%), Postives = 140/262 (53.44%), Query Frame = 0
Query:   55 DWLGYSCASVGDVNGDSLMDVIVGAY---GSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFGGA-GLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIG-EFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            D  G+S +S GDVNGD   D+++GA    GS+    G ++VV+G      +DA    LGA     L+G +GF ++G+ I                     +G+ ++ AGDVNGDGFGDI++G+P+A   G  + G +Y+VFG A G    + L + D   G       F+        +SGFSVS   D+NGDG  D ++G+PE    G    GEAYVVFG+ +  D+  ++  + LDG  GF ++GP+ +   G SV+ +G
Sbjct:  217 DQAGWSVSSAGDVNGDGFDDMVIGAPAADGSASTQAGESYVVFGMADG--FDAQMY-LGA-----LNGANGFRINGIDIS------------------DLSGSSVADAGDVNGDGFGDIIIGAPSANPGGRNNAGESYVVFGKASGFAASLELAQLDGSNG-------FRLDGISANDQSGFSVSAAGDVNGDGFGDILVGSPEADAGGFSLAGEAYVVFGKSSAFDASLIL--SALDGINGFRVIGPARNDVRGCSVSSVG 443          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A2W1JGC4_9CYAN (Bifunctional hemolysin/adenylate cyclase n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JGC4_9CYAN)

HSP 1 Score: 124 bits (312), Expect = 5.250e-28
Identity = 102/283 (36.04%), Postives = 148/283 (52.30%), Query Frame = 0
Query:   37 NVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHL----SEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVS---QGHTYLVFGGAGLPGRVNLTESDDVTGGN----EGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            ++N S+   I   S  +E   G+S +S GDVNGD L D+I+GA     L     E  ++VV+G ++      S L+L       L+G +GFT++G+S+                      GN +SSAGDVNGDG  DI++G+P A        G +Y+VFG +     +NL+   D+ G N     G+  F         ESGFSVS   D+NGDG+ D ++GAP    +GE+ GE+YV+FG  +     TV L +DL+G+ GF+I G S    +G SV+  G
Sbjct:   84 DLNGSNGFTINGISPFDES--GFSVSSAGDVNGDGLDDIIIGAPRRRPLRPIPKEAESYVVFGHSSF----GSILNLSD-----LNGSNGFTINGISVYDNF------------------GNSVSSAGDVNGDGLDDIIIGAPNADPNEIRLAGESYVVFGRSSFESNLNLS---DLNGSNGFTINGISPFD--------ESGFSVSSAGDVNGDGIDDIIVGAPHPTNVGEYSGESYVIFGSTSF--ESTVNL-SDLNGSNGFTINGISPFDESGFSVSSAG 323          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001867AB2B (FG-GAP repeat protein n=1 Tax=Fluviibacterium sp. MJW13 TaxID=2720031 RepID=UPI001867AB2B)

HSP 1 Score: 124 bits (310), Expect = 7.580e-28
Identity = 101/267 (37.83%), Postives = 147/267 (55.06%), Query Frame = 0
Query:   55 DWLGYSCASVGDVNGDSLMDVIVGAYGSSH---LSEGAAHVVYGTNTSAAYD-ASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFG-GAGLPGRVNLTESDDVTGGNEGVVVFKGALTG-EVYE-SGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSD-TVMLD-TDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            D+ G+S AS GDVNGD + D+++GA+G+      + G A++V+G +T+   D A+ +DL +     L+G +GF L+G+            D  D      YTG  +++AGD+NGDG  DIL+GS +A   G +S G TY+VFG    + G  N   S D+     G       LTG + Y+ SG SV+   D+NGDG  D +IGA  G T G  + GE YVVFG++     D    +D  +LDG++GF + G   +  +G SVA  G
Sbjct:  303 DYSGWSVASAGDVNGDGIDDILIGAFGADQAGTFNAGGAYIVFGKDTAVEGDFAASMDLAS-----LNGSNGFALTGI------------DAFD------YTGYSVAAAGDINGDGIDDILIGSTSADRPGTLSSGETYVVFGKDTAVAG--NFAASIDLASFAAGDGSTGFVLTGIDSYDYSGVSVAAAGDVNGDGFDDIVIGAYGGDTAGTQNVGETYVVFGKDTSVTGDFAASIDLANLDGSMGFVLTGVDAEDESGISVASAG 544          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI000FD7EDD0 (VCBS domain-containing protein n=1 Tax=Rhodobacterales TaxID=204455 RepID=UPI000FD7EDD0)

HSP 1 Score: 124 bits (310), Expect = 9.470e-28
Identity = 96/268 (35.82%), Postives = 142/268 (52.99%), Query Frame = 0
Query:   55 DWLGYSCASVGDVNGDSLMDVIVGA-YGSSHLSE-GAAHVVYGTNTSAAYD-ASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFG-----GAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSD---TVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 308
            D  GYS ++ GDVNGD + D+++GA +G +  S  G A++VYG +T  + D  + LDL A     LDG +GF L        ++ +  +          + G  +++AGD+N DG GDI++GS  A   G    G +++VFG         P  V+L + D   G      V  G    +   SGFSV+   D+NGDG+ D +IGAP+G   G   GE Y++FG++  +D D   TV LD  LDG  GF   GP+  A++G +V+  G
Sbjct:  622 DQSGYSVSAAGDVNGDGIDDLLIGAPFGDTGASSTGEAYIVYGRDTEVSGDFGAALDLSA-----LDGTNGFAL--------VFGEASA----------FAGFSVAAAGDINNDGIGDIIIGSYGANPDGVNDAGQSFVVFGRDAATDGDFPASVDLGDLDGTDG-----FVLNGIDADD--RSGFSVASAGDVNGDGIDDLLIGAPQGDAGGGSSGETYLIFGRDTDSDGDFAATVDLDA-LDGATGFVFAGPASGAFSGHAVSAAG 858          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3P0_ECTSI1.630e-19792.93Integrins alpha chain n=1 Tax=Ectocarpus siliculos... [more]
D7G550_ECTSI4.080e-19292.86Integrin alpha chain n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L9N8_9PHAE6.950e-18874.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R8C5B0_9RHOB7.110e-3038.22Uncharacterized protein n=2 Tax=Falsiruegeria TaxI... [more]
A0A6J4PLY3_9RHOB9.050e-2940.77RTX toxins and related Ca2+-binding proteins (Frag... [more]
UPI001F3C3DBB3.040e-2837.40hypothetical protein n=1 Tax=Algimonas arctica Tax... [more]
UPI001989DBF63.850e-2835.88FG-GAP repeat protein n=1 Tax=Sphingomonadaceae ba... [more]
A0A2W1JGC4_9CYAN5.250e-2836.04Bifunctional hemolysin/adenylate cyclase n=1 Tax=A... [more]
UPI001867AB2B7.580e-2837.83FG-GAP repeat protein n=1 Tax=Fluviibacterium sp. ... [more]
UPI000FD7EDD09.470e-2835.82VCBS domain-containing protein n=1 Tax=Rhodobacter... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 148..201
e-value: 0.0019
score: 27.5
coord: 53..108
e-value: 4.8E-5
score: 32.8
coord: 228..283
e-value: 0.0055
score: 25.9
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 43..102
score: 9.501
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 138..197
score: 9.229
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 228..274
score: 8.73
IPR028994Integrin alpha, N-terminalGENE3D2.130.10.130coord: 131..259
e-value: 4.3E-17
score: 64.1
IPR028994Integrin alpha, N-terminalGENE3D2.130.10.130coord: 27..130
e-value: 2.1E-8
score: 35.7
IPR013517FG-GAP repeatPFAMPF01839FG-GAPcoord: 228..264
e-value: 5.6E-6
score: 26.4
coord: 158..185
e-value: 2.6E-6
score: 27.4
coord: 62..94
e-value: 7.1E-6
score: 26.0
NoneNo IPR availablePANTHERPTHR23221GLYCOSYLPHOSPHATIDYLINOSITOL PHOSPHOLIPASE Dcoord: 146..205
coord: 225..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..317
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 50..253
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6765contigEcto-sp13_S_contig6765:51..3911 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6765.17686.1mRNA_Ecto-sp13_S_contig6765.17686.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6765 51..3911 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6765.17686.1 ID=prot_Ecto-sp13_S_contig6765.17686.1|Name=mRNA_Ecto-sp13_S_contig6765.17686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNAS
EINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSA
AYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQ
YTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNL
TESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAP
EGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYA
GSSVAGIGVRLFCWYSR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013519Int_alpha_beta-p
IPR028994Integrin_alpha_N
IPR013517FG-GAP