mRNA_Ecto-sp13_S_contig6765.17687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6765.17687.1
Unique NamemRNA_Ecto-sp13_S_contig6765.17687.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6765.17687.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.650e-44
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 2 
Query:    2 KGTSSLLPRGPGPSPRYKESPGRKRASGTKSYRNMGARRRCREGVTIRAIATGILALCSASIVTGTGTTSVRVREDASFPPWRGGPSEGHRPRE 283
            KGTSSLLPRGPGP PR KESPGRKRASG KSYRNMGAR RCREGVTIRAIA GILALCSASIVTGTGTTSVR REDASFPPWRGGPS+GHRPRE
Sbjct:   37 KGTSSLLPRGPGPFPRNKESPGRKRASGAKSYRNMGARWRCREGVTIRAIAAGILALCSASIVTGTGTTSVRAREDASFPPWRGGPSDGHRPRE 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6765.17687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAH5_9PHAE4.650e-4492.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6765contigEcto-sp13_S_contig6765:4552..7345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size535
Hectar predicted targeting categoryother localisation
Exons3
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.1246483-CDS-Ecto-sp13_S_contig6765:4551..46281681463930.1246483-CDS-Ecto-sp13_S_contig6765:4551..4628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 4552..4628 +
1681463930.1364386-CDS-Ecto-sp13_S_contig6765:6861..70661681463930.1364386-CDS-Ecto-sp13_S_contig6765:6861..7066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 6862..7066 +
1681463930.1508718-CDS-Ecto-sp13_S_contig6765:7094..73431681463930.1508718-CDS-Ecto-sp13_S_contig6765:7094..7343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 7095..7343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6765.17687.1prot_Ecto-sp13_S_contig6765.17687.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6765 4552..7343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6765.17687.1

>prot_Ecto-sp13_S_contig6765.17687.1 ID=prot_Ecto-sp13_S_contig6765.17687.1|Name=mRNA_Ecto-sp13_S_contig6765.17687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
EGHIVTSSARPWPISPIQGITRAKESFRHKKLPQHGGPAAMPRGGDHSRN
SNRYSGPVLCINSHRHRHHLCPSARGCFFPAMERGALRGAPPTRELFSQQ
AFSDRQDREEPWRREHAPWEGEEEKEEDGARSDRDEAARVETWRGGTAAV
NRPPRGAWGEGMDRDEEVGREEEFRGQ
back to top

mRNA from alignment at Ecto-sp13_S_contig6765:4552..7345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6765.17687.1 ID=mRNA_Ecto-sp13_S_contig6765.17687.1|Name=mRNA_Ecto-sp13_S_contig6765.17687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6765:4552..7345+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGGGCACATCGTCACTTCTTCCGCGCGGCCCTGGCCCATCTCCCCGAT
ACAAGGAATCACCAGGGCGAAAGAGAGGTGAGAGAGGCGATGGTTATTTT
CACAGCAGCCTAACGTCTGTGTGTCGGCTTGTTTCCCGACAGTCTCGCGC
CCCATGCGCTGGCCGTTCGGCGCGGTTGGCTTAGAGAGAGAGAGAGAGTA
ACAAACAAAAAGTGTGCGGGCAGCACCACACCTACACGTACACATATGCA
CACGGCCGGAAGGATGCTGCTGTCATCTTTAGCGCCATCCGTCAGCGCAA
ATGCCCCTAAGGGCACACAAGAGAAGACAACCTTTGCGGGAAGCGGGGTT
TTAAGATCCGTTTTCAGCCGCTCTCCCCACAGGAGACCTCCGCGTGAGAC
CGATCATGCGATAGCAAAAGCGAGAGGATGAATCTAGTTTTTTTCAAGGG
AAAAGGAGAGACTCCGATGTTACAACACCATGGCGCTATGTGTCGTTCGC
CGAATACCCTTGCCTGCTCTGGGATTTTCTTTGCTTGCCGATGGTCTCTG
CAGCTTTGTGTCAAGATGTAGAATCATTTGTTTTGCTGTTTGCAGCAGGC
CAAGCGGGCAACCGCTGATGCACCCTATTGACGTATGTACAAATGTACAC
CCGCTCTCCAGCTCACTTCCACCCTCTCACCGGTGATGTCATAAGCCTTG
ATCATAACGGAGTAGAGATGAAGCGCTTGCGAGACACCGAGGGGGGGTTG
TGTTTCGACAAATGTGCAGACGGCCGATGAAAAATACCGAAGCTCGGAAG
CCCACAAAGGGTGAATCTGGGAAGCCTCAGGTGTTGCGGTGTGGGAAGCG
CACACCTTCACACCATCTTCGCTTGGTCATCTCTGCCCCGCCCAAGAATA
GATTTGTCGATAACGCAAGGAACAAACTTTTATGCCGGACCTGTGTTTAC
TTTCGGGAACCAGGGGAACACCGGTTGATGTCCTCTTCATTTGTTTGTTT
TTTATGTTCGGGCGTTTCCGTCCAAACAGCAGAGCCATAGCTTCCCGTAC
CATGTACGTTCGCTTCGTACAGCCATTATGGAGTGAGAGGACACGGTCTC
TCTCAGTTTTGAAGGCGGTTGGCGATGCTGAACGGCTGTTGTTATCGCGC
AGTATCTATCGCAGACAACTTCGTTGTCATTTACTTCTGGTTGTTGTAGA
GTTTGGTCGCTTGTTTGGCAAATACCATCCATGTACGGCATTATTGCGTT
TTCGACAGAAATTTACAAAGAAATAAATACCCCGATGTTACCGCACAGGT
GGCTCGGTGGCTCAAGAAACCACAACGCCCTGAGCCAAAGCTCAATTTCT
CAACGACGAAGAGGATGCCACAATTAAAATGACAGTTTTTCGGGAGCTCT
CGACGAGGCGGCTCCAACGCCGCCGTTTTCGGCACACCCACTCTTTCTGC
TGTGGAGAAATTGACCTGTGAAAATCCGTCGATATCGAATGTCAATACGT
GATGATACAGGGTCGACCTCGAGATTCGATATATGGACGTACTGCTGTAT
TACGATATGCGCATGATGCGAACGGAATCCCTCTTTCAGAATTAGCGTGA
GGCAACTGGTAATGGCACCGCGTGGAATCGTATTTCACACCATTTTCTAT
TGGTCTCAAATCTCGGAGATGAGGAATCTAGCAGAGGGCTCGGTCCCAAA
TAATAAAAAAATCCTCGCCCCATCGACGCCTCCAGCATGTTTCACACCAA
CCAGAGGCCGGGGCGCAGAGACGGAACTGAATACTTCACTTTGAACCCCG
GTGCGATAACTCCGAGGCGTGCGATGTTGAAAAATGAAACCAGCGACCTT
ACTGGGACAATGCACCTCGGTGTATTTTTGCGCTCTTGCGGTCGTTAGGT
GCGCTATTTATTTACGTCAAAGGCATGTTTCTGCAGCGAACAGTAGTACT
TGCAAAGATCGTGTTTTGTGTTCCGCGATTTTCATTCAGAGGTGTCTTCT
CTTGCCTCTATTTTGCCTGATGTACGGAATCGTGCTTTAGTTTAGGATGA
CGGAATTCCGCCGTTATTGCTCGTTTGTTGGTCTGGCAGCGACACCGCGC
GTGATGCTAAATGGGGAGTGTTCGAGAGGAGACGCGCCGCAGAGCTCGTT
TGTTGCATGCTAGTCGGTGTGAATATCATCCACTCGCACAGCAGGCTACG
ACAGTTGCCAGTACCATCCCCGTACACAGAAAACCTAGCCTTTTTACGTG
CAAAGCTCTTGACCAGTTTCTCCATCCCCCCCCCCCCAACCCCCACCCCT
CTACCACAAGCTTCCGGCACAAAAAGCTACCGCAACATGGGGGCCCGGCG
GCGATGCCGAGAGGGGGTGACCATTCGCGCAATAGCAACCGGTATTCTGG
CCCTGTGCTCTGCATCAATAGTCACCGGCACCGGCACCACCTCTGTCCGA
GTGCGAGAGGATGCTTCTTTCCCGCCATGGAGAGGGGGGCCCTCAGAGGG
GCACCGCCCACGAGAGTGGGGGGAGGGGGGGGGCGTACAGGAGGAGCTGT
TCTCACAGCAGGCATTTTCGGATCGGCAGGACAGGGAGGAACCGTGGCGA
AGAGAGCACGCCCCGTGGGAAGGGGAGGAGGAGAAGGAGGAGGATGGGGC
GAGATCTGACCGAGATGAAGCGGCGCGGGTAGAAACATGGCGGGGAGGAA
CGGCAGCAGTGAATAGACCACCGAGGGGGGCGTGGGGCGAGGGAATGGAC
AGGGATGAAGAAGTAGGCAGGGAAGAAGAGTTCCGCGGGCAGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6765:4552..7345+

>mRNA_Ecto-sp13_S_contig6765.17687.1 ID=mRNA_Ecto-sp13_S_contig6765.17687.1|Name=mRNA_Ecto-sp13_S_contig6765.17687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6765:4552..7345+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGGGCACATCGTCACTTCTTCCGCGCGGCCCTGGCCCATCTCCCCGAT
ACAAGGAATCACCAGGGCGAAAGAGAGCTTCCGGCACAAAAAGCTACCGC
AACATGGGGGCCCGGCGGCGATGCCGAGAGGGGGTGACCATTCGCGCAAT
AGCAACCGGTATTCTGGCCCTGTGCTCTGCATCAATAGTCACCGGCACCG
GCACCACCTCTGTCCGAGTGCGAGAGGATGCTTCTTTCCCGCCATGGAGA
GGGGGGCCCTCAGAGGGGCACCGCCCACGAGAGAGCTGTTCTCACAGCAG
GCATTTTCGGATCGGCAGGACAGGGAGGAACCGTGGCGAAGAGAGCACGC
CCCGTGGGAAGGGGAGGAGGAGAAGGAGGAGGATGGGGCGAGATCTGACC
GAGATGAAGCGGCGCGGGTAGAAACATGGCGGGGAGGAACGGCAGCAGTG
AATAGACCACCGAGGGGGGCGTGGGGCGAGGGAATGGACAGGGATGAAGA
AGTAGGCAGGGAAGAAGAGTTCCGCGGGCAG
back to top