mRNA_Ecto-sp13_S_contig6762.17683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6762.17683.1
Unique NamemRNA_Ecto-sp13_S_contig6762.17683.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6762.17683.1 vs. uniprot
Match: D7FZV2_ECTSI (EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV2_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-12
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:  798 GGVRTMIELGVDVNGADWSGFTPLHWTSDKITVDLL 905
            GGVRTMIELGVDVNGADWSGFTPLHWTSDK TVDLL
Sbjct:   51 GGVRTMIELGVDVNGADWSGFTPLHWTSDKTTVDLL 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6762.17683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZV2_ECTSI1.210e-1297.22EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6762contigEcto-sp13_S_contig6762:2527..6688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1977
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionEsV-1-157
Ec32 orthologEc-22_003980.1
Cds size261
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6762.17683.1prot_Ecto-sp13_S_contig6762.17683.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6762 5212..5876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.7476232-UTR-Ecto-sp13_S_contig6762:2526..31701681463929.7476232-UTR-Ecto-sp13_S_contig6762:2526..3170Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6762 2527..3170 -
1681463929.8023715-UTR-Ecto-sp13_S_contig6762:3299..35541681463929.8023715-UTR-Ecto-sp13_S_contig6762:3299..3554Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6762 3300..3554 -
1681463929.8230054-UTR-Ecto-sp13_S_contig6762:5206..52111681463929.8230054-UTR-Ecto-sp13_S_contig6762:5206..5211Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6762 5207..5211 -
1681463929.8579803-UTR-Ecto-sp13_S_contig6762:5876..66881681463929.8579803-UTR-Ecto-sp13_S_contig6762:5876..6688Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6762 5877..6688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.836527-CDS-Ecto-sp13_S_contig6762:5211..53461681463929.836527-CDS-Ecto-sp13_S_contig6762:5211..5346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6762 5212..5346 -
1681463929.8479578-CDS-Ecto-sp13_S_contig6762:5750..58761681463929.8479578-CDS-Ecto-sp13_S_contig6762:5750..5876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6762 5751..5876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6762.17683.1

>prot_Ecto-sp13_S_contig6762.17683.1 ID=prot_Ecto-sp13_S_contig6762.17683.1|Name=mRNA_Ecto-sp13_S_contig6762.17683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MIELGVDVNGADWSGFTPLHWTSDKITVDLLIDAGANIEAQEGEGAAAGG
VGGERQRRVGSWGGVGAGRGVGKGVERIFRMIVGYL*
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mRNA from alignment at Ecto-sp13_S_contig6762:2527..6688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6762.17683.1 ID=mRNA_Ecto-sp13_S_contig6762.17683.1|Name=mRNA_Ecto-sp13_S_contig6762.17683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6762:2527..6688- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGACTGGCGGCAGCGCGTATCGGCTCTTTCTGGGTCACAAGGGGGAGC
GCATGTGGTGGTCCTCTGCTGATGTCAGGTACGGATGTCAACGCCCCAGA
CAGCGAACATCAAACGCCGGTACACAGCCGCGTGTGCGGTGGACCTTCAG
CTAATGTCACCCCAAGACAGCCGTAAAAGATGAGTCACAAGGAGCTGCGC
ATGTGGTGGACCATCTGCTGAAGTCAGGTGTGGACGAGACGACCGTGGAT
AAGGATGGCAAAACAGCGGTAGGTGCAGCTACGTGAAGGATGTCGAGCGC
GTGCAGCTGAGAAAGAGAAGCAGTGCGCATGCCGGCGTGGCGCGGAGGAT
TCGCAGCGGTTCTAAGCTTCACACGGGCGGGCTCGCCGGAGGTGGCGCGG
TGGTGGATGAGCGGATTGGCGGCGACTGGGCCGGTTTCGCGCGGCAGGTG
CTGGTATCTTTAAAACCCAGGTGAGTCGTGTCGTTTTCTGTGGCGATGCA
AGAGGCTCAAACGTTTGTAACCTGAAAAAGCCGACCCCTTTAGTTCACCT
TCTTCAGCGCCTTTCGTCAAATTGTTATTTCAACAACCATCCACGTGTAG
TACGGCAGGAAGCTCGCGTGGCACTGGAGGCTCACGGAACAACGGGGCGA
ACGTCGACCAGGACGAACACTGTTGTAGCACGACCCGAGCTGCTTATTTT
CGAGGGAGCTCTGGCCAGGGTGTAGAAGGCGGTGTTTGCATCACTCAGGG
AAATATTTGGATAGGTGTTGTTTTGTGCAAAGCGTTTTTTTTGTGTGGGT
GGTGTAAGAACGATGATCGAGCTCGGGGTGGACGTCAATGGTGCTGACTG
GTCAGGGTTCACACCGCTTCATTGGACGTCGGACAAGATCACGGTGGATC
TACTCATCGATGCTGGGGCCAACATCGAAGCTCAGGAGGTAGGAGGCAGC
ACACCTCTCAATTGTACTCACGAATTGGACGAAATCTGCGCCCTCGTGAA
CCACGGTGCAGACTTCAAAACACAGGATAAGGACGGCCACACGCCTCTGC
ATAATGCCGTACATGATCCAGAAGATCCGTATTCTATTCATGCGGACATC
GTCGAAAAAGTGGATTTGTTGCTCAAGACAGGCGCAGACGAGACCGTGGT
TGACAATGAAGGCAAGACAGCCGTGCAGAGGTTGGATGCCGCTTTACTCC
ACGGTTATATACTTTACGACGGAGAGGACGATAACCTTGCCAGGACCGCA
CGCAAGCTTCTGGCTAACGCTCCGGCCCACAGGACTGACTCGAGGTGGCG
TCGCCGCGCTCTTCTGGTACTGTGCATCGCGCGCCATCGCAGGGAGAAGG
CGCAGCTGCTGGAGGGGTGGGTGGGGAACGCCAGCGACGAGTGGGCTCGT
GGGGCGGCGTGGGTGCTGGACGCGGGGTTGGAAAGGGTGTGGAAAGGATA
TTTCGGATGATCGTGGGGTACCTGTGAAGCCGGTGAGTTAATGGGGGTTT
TGGTGGCGCTGCTCGAAGCTTCAATAGTGTAGTTCGTGTTTTGTTTTCCC
TTGAAACTCGCTCGTGGTGTTAACCAGCTCGATCTCACTGTCTGATGTTG
GGTTGGGCCCAGCCTGACTTTCTGATGTTGGGTTGACGTCCAGGATAAGA
CTTTCTTATGTAATGTATCTTGCCTAAATGTACAAGAGTGTCTCGTCGGT
GTGCAAGCGGCTGTCCACGTTTGCGCCTGCATTGATCAGCACGACCATCC
CTTCGTGGAAGCCAGTTGGTGGATCCTCGAATGGTCTCTGACCCCGATAG
GAAGTAAGCTCTCGCTCCTACGTCCGCACCGGCCTTGACCAGAGCCTTGC
TGACGGCCAGGTATCATTGTCCGCCACCGACAAAGGACCCTTACGACCCG
CAAATATCCCATGGTGGAGGCCGCCATAAGAGGTGTCCGACCCACATCGC
CATAGCCTCTGTCGATGTCGACTGCCCCTCGAGAAAGCAGGGCAACTGCT
GTTTCATGCAGTTTGCTTAGAGTTGACGGCATGTTGGAAATTGAAACAAG
TGCCCTGAGCGCTACCTATGTTTCCAGTAAGCTATGCATTTACACCTAAC
GCCTGCTCCTCTTTTTCGTTCGTACTGACATTACGAGTAGTTCTTTTTTT
GTTCCCTTAGCCTTTTCATTTGTTTGCAAGGTGTCTTCCGTGCGCTTCGC
GGCCGAATGTAGCCATGGACCCGGCTGGCTGACTTTGCCTTGTCCATAGC
CGAAGTTTAGAAGACGACGCCTCCTTGCGCTTCGTACCCCTCGCCGGACT
CTTCCTCACAACGATATAGTCCTAGTTTTCGCCGTGGTCAGATGCCATTA
CCGCTCTCGTGATGACGGCGGTTGCCTTGCTTTTTGAGCTCTTGATATGC
TTTTTCCTTGGCGGCAACGTCGACAGACGCCTTGTTCTCGGCCTTTTCTT
TCGCAGCTTGGGCCGCGCCGGCATTTTTGCTCCCATGAGCGCGAGTGTCT
CGTGGATGCTGTTTTTCTTCGGGATTTTGGCCACACCACTTCACACCTCT
CGCGTCTCGCCATTTTCATGTTTTTGTAGAATTGTCTGCTTTCTGTTTTA
TGGTAAATTAGGTGCATTGTCACCTGCGATATCGATCACTTTGCTAGTCA
GCTGCGGCTCAAGAAGCCTTTTGCGTGGGTCAGTCATTGGAAGCCTTTTT
CGTGGGGCGAAACTGAGCTGTATTAGCGCGTAGAGAATTATCCACGGGTT
GGATAGCTAGCGTTTGGTAGCAGTTCACCTTTTCCGTACACACCCACCAT
CTGATCTTTGATACCTCGATTAAATAACTGGAACTGATTTACGTACACCA
ACTAGATTGTCAATCCTTGTCTTGCAGCAGGAAATCAAGCAGCTGTGCCT
GGAGCAGCAGGAGCTATGTCGGGATTGTTGCACAATGTTCCACGCTGACT
TTCGCGTTGTTGGTTGTTCGCAAAAAGAACGGCCATCTGGACCGTCACCG
GTATCAAAAAGACCGCACGATCCAGACAGTGCGAGATATTCTGGCTTGGG
CTGGCGCAGTACCTCAAAACGACAAGTATCGCTCCAATCCCTCCGATGTT
TTACAACATATGTACGATCTTCCTGCCTGGTCAGGAAATGTTTTTCGGTC
GGGCTGGTGGTGGAGCTGGTTGGGAGTCACCGGTGACGCTGATACCGTAG
TTGGAGGGAGCGAGGATTTTTAGGACCAGACCCAAGCCGGGCGGAGGCAG
CAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGTGAAGAAAGCCCAAGCCC
ACGACATACTCGAAGGGGGCAATGTCGGCGCCCGGGTTATGGCCTCCACC
GCCGCCGACTCTGCGGTGAACCATAAAGCCCGACTCAGGGTGAGGGGGAA
GGAAGCGTTGGTGAACCCCAAGAGCACTGACTGGCAGGTTGTTTCGTTTG
TGGTTTCAACCACTTGACATCCTAAAACCTAGCCCCGGCCTCCGTTCTAC
CCATGTTGTCCGCCGCAGGTCTAGCCAAGCCGGGTATTCTTTCGCTAGCC
AGTTCATGCGGAAGAAAAGTGTTGTCTCCTGGCCCCTCTCGAGAGCAAGG
GCGAGATTCGTACCAGCTTCTGTTGGTGCCATCGGCTCCTTATTTGCTAC
TATACGAGAGGGTGATACAACCCGTGAAATATCCGTTTTGCGTGGTCGTG
CAAAATTGGATTGCGTTGTTGGATATATACCCACACAAGGTGTCGTTGAC
GTCCTCGTTTCGAATTGATTGCGGTAAAAATAGCTGGAGTCGAACCCCGC
AGTCGAGATACGCTCAACAACAACACACCATGGCGTATTGTCCGTGGAAA
AACTCAAAACGAGGTTGGGGATATCGAGCGTTAGGTCACTAGAGCTTCGA
CCCCGCACCTAGTCTAGAACAGGCGAACGTGTAGGGATCTGTGGTTTGCA
TGTCGCTTTCATGGGCTCGGATAAATCGAAACAATTTCTAATGAAATCCC
AAACACGAGAAAGGCGGAGAGGATTAATCGTCACGAAACAAGGGCCACTT
CATGGCTGTGATAGATTTATTTGCTAAAACACAAGCTCGAGACGTACGAA
CTGTATTTGTGCCGCGGGAATACCGCAAGTTGGGCATTCCTTTGGCCCAG
GGCATGCGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6762:2527..6688-

>mRNA_Ecto-sp13_S_contig6762.17683.1 ID=mRNA_Ecto-sp13_S_contig6762.17683.1|Name=mRNA_Ecto-sp13_S_contig6762.17683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6762:2527..6688- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAGCTCGGGGTGGACGTCAATGGTGCTGACTGGTCAGGGTTCAC
ACCGCTTCATTGGACGTCGGACAAGATCACGGTGGATCTACTCATCGATG
CTGGGGCCAACATCGAAGCTCAGGAGGGAGAAGGCGCAGCTGCTGGAGGG
GTGGGTGGGGAACGCCAGCGACGAGTGGGCTCGTGGGGCGGCGTGGGTGC
TGGACGCGGGGTTGGAAAGGGTGTGGAAAGGATATTTCGGATGATCGTGG
GGTACCTGTGA
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