mRNA_Ecto-sp13_S_contig6762.17682.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6762.17682.1
Unique NamemRNA_Ecto-sp13_S_contig6762.17682.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6762.17682.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 5.890e-56
Identity = 128/145 (88.28%), Postives = 130/145 (89.66%), Query Frame = 1 
Query:   19 MTSLSAMSEGDEEEGGGDHDAREAADGSQAADEIRAVQXXXXXXXXXXED-------AEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEXXXXXXXXXXXXXXDLLLKKEDRLSRIEQLRANNAPAGI 432
            MTS SAMSEGDEEEGGGDHDAREAADGS AADEIRAVQXXXXXXXXXX         AEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKE   XXXXXXXXXXX +LLKKEDRLSRIEQLRANNAPAG+
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGV 145
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BLAST of mRNA_Ecto-sp13_S_contig6762.17682.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.060e-48
Identity = 110/138 (79.71%), Postives = 113/138 (81.88%), Query Frame = 1 
Query:   19 MTSLSAMSEGDEEEGGGDHDAREAADGSQAADEIRAVQXXXXXXXXXXEDAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEXXXXXXXXXXXXXX--DLLLKKEDRLSRIEQLRANNAPA 426
            MTSLSAMSEGDEEEGGGDHDAREAAD   AADEIRAVQ         XEDAE+ETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKEEQ     XXXXXXXXXX      +LLLKKEDR SRIEQLRANNAPA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138
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BLAST of mRNA_Ecto-sp13_S_contig6762.17682.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.530e-47
Identity = 114/153 (74.51%), Postives = 117/153 (76.47%), Query Frame = 1 
Query:    1 FYPVRGMTSLSAMSEGDEEEGGGDHDAREAADGSQAADEIRAVQXXXXXXXXXXEDAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEXXXXXXXXXXXXXX-----------DLLLKKEDRLSRIEQLRANNAPA 426
            FYPVRGMT LSAMSEGDEEEGGGDH AREAAD   AADEIRAVQ          EDAEEETAEVVKKID IEAAIAGG++YLGMTDPEALLKQL    EQLRR  XXXXXXXXXXXXXX           +LLLK EDRLSR EQ RANNAPA
Sbjct:    2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_Ecto-sp13_S_contig6762.17682.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.480e-33
Identity = 105/150 (70.00%), Postives = 115/150 (76.67%), Query Frame = 1 
Query:    4 YPVRGMTSLSAMSEGDEEEGGGDHDAREAADGSQAADEIRAVQXXXXXXXXXXEDAEEETAEVVKKIDYIEAA-IAGGSKYLGMTDPEALLKQLGRKEEQLRRKEXXXXXXXXXXXXXXDLLLKKEDRLSRIEQLRANNAPAGIEASHFV 450
            YPVRG+TSLSA+SEG+EE+GGGDHD REAA GS AADEIRAVQXXXXXXXXXX            KID +EAA IAGGS YLGMTDPEALLK+    +E+L     XXXXXXXXXXXXX  +L KE RL  IEQ RANNAPAG EASH+V
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKE----KERLGX---XXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGTEASHYV 145
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BLAST of mRNA_Ecto-sp13_S_contig6762.17682.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.660e-32
Identity = 82/102 (80.39%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    1 FYPVRGMTSLSAMSEGDEEEGGGDHDAREAADGSQAADEIRAVQXXXXXXXXXXEDAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLR 306
            FYPV GMTSLSAMSEG EEEGGGDH AREAADGS AADEIRAVQXXXXXXXXXX              D IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLR
Sbjct:   70 FYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6762.17682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G515_ECTSI5.890e-5688.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI3.060e-4879.71Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI2.530e-4774.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI2.480e-3370.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI1.660e-3280.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6762contigEcto-sp13_S_contig6762:502..954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008110.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.4267707-CDS-Ecto-sp13_S_contig6762:501..9361681463929.4267707-CDS-Ecto-sp13_S_contig6762:501..936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6762 502..936 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.7117345-UTR-Ecto-sp13_S_contig6762:936..9541681463929.7117345-UTR-Ecto-sp13_S_contig6762:936..954Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6762 937..954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6762.17682.1prot_Ecto-sp13_S_contig6762.17682.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6762 502..936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6762.17682.1

>prot_Ecto-sp13_S_contig6762.17682.1 ID=prot_Ecto-sp13_S_contig6762.17682.1|Name=mRNA_Ecto-sp13_S_contig6762.17682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MTSLSAMSEGDEEEGGGDHDAREAADGSQAADEIRAVQDEIRGVERKIED
AEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEE
KEEQLRRKEEQLRDLLLKKEDRLSRIEQLRANNAPAGIEASHFV*
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mRNA from alignment at Ecto-sp13_S_contig6762:502..954-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6762.17682.1 ID=mRNA_Ecto-sp13_S_contig6762.17682.1|Name=mRNA_Ecto-sp13_S_contig6762.17682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6762:502..954- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTACCCGGTGCGAGGGATGACGAGCTTGAGCGCGATGAGCGAGGGCGA
CGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATGGCA
GTCAAGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTGGTGTA
GAGCGAAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAA
GATTGATTATATTGAGGCTGCTATTGCGGGGGGCTCCAAGTACCTCGGAA
TGACCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAGCAA
CTACGCAGGAAGGAGGAGAAGGAGGAGCAACTACGCAGGAAGGAGGAGCA
GCTCCGCGACCTCCTTTTGAAGAAGGAGGACCGGCTCTCAAGGATTGAGC
AGCTCCGTGCCAACAACGCCCCCGCAGGTATAGAAGCGTCCCATTTTGTG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6762:502..954-

>mRNA_Ecto-sp13_S_contig6762.17682.1 ID=mRNA_Ecto-sp13_S_contig6762.17682.1|Name=mRNA_Ecto-sp13_S_contig6762.17682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6762:502..954- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGCTTGAGCGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGG
CGATCATGATGCGCGAGAAGCTGCCGATGGCAGTCAAGCGGCGGACGAGA
TCCGTGCGGTCCAGGATGAGATCCGTGGTGTAGAGCGAAAGATCGAGGAT
GCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATTATATTGAGGC
TGCTATTGCGGGGGGCTCCAAGTACCTCGGAATGACCGACCCCGAAGCCC
TCTTGAAGCAACTAGGCAGGAAGGAGGAGCAACTACGCAGGAAGGAGGAG
AAGGAGGAGCAACTACGCAGGAAGGAGGAGCAGCTCCGCGACCTCCTTTT
GAAGAAGGAGGACCGGCTCTCAAGGATTGAGCAGCTCCGTGCCAACAACG
CCCCCGCAGGTATAGAAGCGTCCCATTTTGTGTGA
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