mRNA_Ecto-sp13_S_contig6761.17681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6761.17681.1
Unique NamemRNA_Ecto-sp13_S_contig6761.17681.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6761.17681.1 vs. uniprot
Match: D8LR43_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LR43_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 3.660e-103
Identity = 263/288 (91.32%), Postives = 269/288 (93.40%), Query Frame = 1 
Query:    1 EYNSLFSKTVECDQDCPGLINCNMFGLCEQCRGCFETCEGAMLFMEETSSPADYITFCSGIGIADMAQCEDDVYGSGAGSGSMSSGXXXXXXXXXXGGGSEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVTXXXXXXXXXXXXXXXXXXGTASXXXXXXXXXXXXXXXXXXXXXXXXXRVTEIEGCDCGTAELEPAFAAYFCENGKSMYCDLECVDGSDPDDALFPSMGGLWCQPEGWEGCRMCKFDCADYEGDACVPCPSGLKDWC 864
            E+NS+FSKTVECDQDCPGLINCNMFG+CEQCRGCFETCEGAMLFME+T SPA+YITFCSGIGIADMAQCEDDVYGSGA        XXXXXXXXXX GGSEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  V XXXXXXXXXXXXXXXXX G ASXXXXXXXXXXXXXXXXXXXXXXXXXRV EIEGCDCGTAELEPAFAAYFCENGKSMYCDLECVDGSDPDD LFPSMGGLWCQPEGWEGCRMCKFDC DYEGD CVPCPSGLK+WC
Sbjct:   44 EHNSIFSKTVECDQDCPGLINCNMFGICEQCRGCFETCEGAMLFMEKTGSPAEYITFCSGIGIADMAQCEDDVYGSGAXXXXXXXXXXXXXXXXXXXGGSEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXTGIASXXXXXXXXXXXXXXXXXXXXXXXXXRVAEIEGCDCGTAELEPAFAAYFCENGKSMYCDLECVDGSDPDDVLFPSMGGLWCQPEGWEGCRMCKFDCTDYEGDFCVPCPSGLKNWC 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6761.17681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR43_ECTSI3.660e-10391.32Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6761contigEcto-sp13_S_contig6761:645..5537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2441
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_004430.1
Cds size798
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6761.17681.1prot_Ecto-sp13_S_contig6761.17681.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6761 1313..3963 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.3103168-UTR-Ecto-sp13_S_contig6761:644..6991681463929.3103168-UTR-Ecto-sp13_S_contig6761:644..699Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6761 645..699 +
1681463929.3230832-UTR-Ecto-sp13_S_contig6761:1298..13121681463929.3230832-UTR-Ecto-sp13_S_contig6761:1298..1312Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6761 1299..1312 +
1681463929.3824444-UTR-Ecto-sp13_S_contig6761:3963..55371681463929.3824444-UTR-Ecto-sp13_S_contig6761:3963..5537Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6761 3964..5537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.3341646-CDS-Ecto-sp13_S_contig6761:1312..13711681463929.3341646-CDS-Ecto-sp13_S_contig6761:1312..1371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6761 1313..1371 +
1681463929.3463805-CDS-Ecto-sp13_S_contig6761:1925..22031681463929.3463805-CDS-Ecto-sp13_S_contig6761:1925..2203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6761 1926..2203 +
1681463929.355434-CDS-Ecto-sp13_S_contig6761:2954..31541681463929.355434-CDS-Ecto-sp13_S_contig6761:2954..3154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6761 2955..3154 +
1681463929.3649638-CDS-Ecto-sp13_S_contig6761:3702..39631681463929.3649638-CDS-Ecto-sp13_S_contig6761:3702..3963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6761 3703..3963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6761.17681.1

>prot_Ecto-sp13_S_contig6761.17681.1 ID=prot_Ecto-sp13_S_contig6761.17681.1|Name=mRNA_Ecto-sp13_S_contig6761.17681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
MFGLCEQCRGCFETCEGAMLFMEETSSPADYITFCSGIGIADMAQCEDDV
YGSGAGSGSMSSGGSAYGSGSGAGGGSEMSQGGSAYGSGSGAGGGSMSST
ASGAGSGSGGIAGDSASGSALDSASEGVTAEYGSGNGSGAGSMSSSAGTA
SGSADASGAGSMSSSTATASGSGDASRVTEIEGCDCGTAELEPAFAAYFC
ENGKSMYCDLECVDGSDPDDALFPSMGGLWCQPEGWEGCRMCKFDCADYE
GDACVPCPSGLKDWC*
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mRNA from alignment at Ecto-sp13_S_contig6761:645..5537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6761.17681.1 ID=mRNA_Ecto-sp13_S_contig6761.17681.1|Name=mRNA_Ecto-sp13_S_contig6761.17681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6761:645..5537+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTACAACAGCCTTTTCAGCAAGACCGTCGAGTGCGACCAGGATTGCCC
CGGATGTGAGTGTCACACGAAACGAAAGTCCAGGAAAGACCATGAATCAC
ACAACGTCCAAGAAGACTAATAAACAAATCGGTAGGTTCATGTTTTGTTT
ATGTAGCATACGTTCCTAGAATCGGCGCGTGTTGCTGGCGGCCTCTTTCG
TCGTGTCTGTTGAGTACCCGGTTACTGCTGTACAGCAGTAGCCAACCCGC
GTAGACGAGCTGAGATCCATCCCAGCAGCAAGTACAAGATCGTTTCCCCG
AGAGGGTGCTAGTGTGCGGTCCGGTCGTTGCTGCTATTACTCGGCCGCGT
GCAGGTTGGCACCGGCGCGCGTGTGTAGCGTGCGGGTTTGGAGCATTTGT
CGCAGCGATTCCGCCAGTCAGCCACGCTCGTTTTCTCAAGTCTTCGTATT
TCGTGCACTTGCTCATCATCCAACTTGTAACTCTCTGTTGTTGTTTATTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCGCCCCCCCC
CCCCCCGCTCCCCCCGCGCGCTATCGTCCCTCCTTTGTCCCCCCACGCGC
ACACCCCGACGAAACCTATGGATGGAATGACCTCTCGTTTCTCCGCGAAA
AAAGTGATCAACTGCAACATGTTCGGGCTTTGCGAGCAGTGCCGCGGATG
CTTCGAAACGTGCGAGGGTGCGATGCTGTGAGTATGAGTACCGTGCATAT
CGCCGTGCCTGGTGTGCGGATCACGGCAGGATCTTCCGCGATCCCCCTCC
CCCCCCCCACCGGCTTCTCCTCCCTACCATATGGATGGCGCCTCTCCCTG
CGTGAAAGCGCTGGCTGCGTCGTCTCTAGTTGGTCCGCAGGCGCTTCCGT
CGATCAGGGGGGGGGACCTTTGGCAGGAAGCTGTCGCTTTCGGTTGGACT
CGAGTCGATTGGTTCATGTCGACGGGGCACTCATGGGCCGAGGGGCCCAA
GCGTGCGCACATAAGTTTTTTTTGTCTTTTTCCGGCATTTTTTTGGGACA
TTTTTTAGCTCGGTGACATCAACGGTCGCTCAGGCGCGGGAGTGCCCCAC
TCCTCCGTCCCCCCCCTCGCCACCTTTCTCCCCCTCCCCCTACGCGCACC
GTGATTCGTACATGGCAAGGTGTACGGGAATGAATAAATGCGCGTTGTTC
CGCTCTGTGAACTAACACACACACACACTAACGACACCACCCACCACCAC
CACGAAAAAATAAAAACTACTGTACCCACAGGTTCATGGAAGAAACCTCG
TCGCCCGCGGACTACATCACGTTCTGTTCCGGCATCGGCATCGCCGACAT
GGCTCAATGCGAGGACGACGTGTACGGCAGCGGGGCCGGGTCCGGGTCCA
TGTCCAGCGGGGGCTCCGCTTACGGATCCGGCAGCGGGGCCGGAGGGGGG
TCCGAGATGTCGCAAGGGGGCTCCGCATACGGATCTGGTAGCGGGGCAGG
AGGCGGGTCGATGTCGAGCACCGCCAGCGGTGCGGGCAGCGGTTCGGGCG
GAATCGCCGGTGGGCGTTTTTTGTTGTTGCATCGATGCCTTTGTAAGAGT
TTTACTTACACGCGTTGGTATGGAAGACATGTTTTTCCCAACAGGGCATG
TGTTGATAGGTCTTCTTCAGGCGGGGACACGGGTGGGACGGTAGCGCTCC
ATCCAGCGGAATTGCTCTGCTTGAAGATAGTGCAGGCTGTTTGCGTTTTT
GTTGCGAGAACAACGTTGGATTCGGCGATAAAAACGGAGAAAGGCGGCAC
CGGAGCCGCCCACCATCGCGGTTAGTTCACGCCGGGAAAATGAACTTCAT
TCCTATCCCTTCGAATGATTTTTCATTTAACAATTTGTGACGGTGACCTC
ACCTCCGACCAAAACCTCACGTGTACGACGTTACGCCCAAACCCAAAACA
TGTAGGAGTACGCATACAACTGAGCCGAACACAGACACGTCATCAATCAT
GGAGTTCCTTTTTTTTTTTTCCGGTGAGGAAATAACAAAAGGAGACACGC
TCTAACACGGAGGTTCTCGGATAGTTGCCATATCTGCCCAGAACATAAAG
TTGCGGGACGTACATCCACCGACGCGGTGTGCAAATAATGTGTCGTTCGC
GGTAAGCGGCGGCGGTAATACTGATCGGCCGGTGTGAACGGCGTGTAGCT
CGAGCGCATCGTCATCCGTGATGGTTTGTACAAAAATACGAGCGTCCAAC
ACACACTCTGCATTACCTTTGGCCTCCGCCCCGCCGCCCCGCCCTCCGCC
GGTACGCCAGGCGACAGTGCGTCGGGCAGCGCGCTCGACAGCGCGTCGGA
GGGGGTGACCGCCGAGTACGGCAGCGGCAACGGCAGCGGTGCCGGGAGCA
TGTCGAGCAGCGCGGGTACTGCCAGCGGAAGCGCAGACGCCAGCGGTGCC
GGGAGCATGTCGAGCAGCACGGCTACTGCCAGCGGAAGCGGGGACGCGAG
CAGGGTGACGGTGAGTGTTGCAGCAAGCGGGGACTCTCGAGGCAGGATAG
CGGCAGTGTTGGTTGGGGCCACCGCGGTGGGTGTGCGCTTGAGGCAAGGG
CGAAACGTGCAGGACTTGAGTCCAATTTACTGAACATGTTGATCATCCAT
GTCCCCCACCATCCACTGCCGTGGTGGTGGATATTCCGGAGATTTTTTTT
TCGATGTGGTTGTCACACCGTGCGTAGCTCCCGCGTGCGTGCACCGGACC
AGAGAGCGTGTGTTTTGCACACCACGCCATCCACGCGCATGCATACGCCA
TGTATTCCTCGTCGCGAGCTTGTTTTTGTTGTTGTTGTTGCTATTGTTGT
ATTATTTACCCTACAAACCGTTTCGATCTCTGTACCCAGTACCTTCATCT
GTCCGTACTGATGTAACACTTGACGCGGTCAGTCACAGGGCTACCTTGCC
CTGAGAAGCCAGCTTGAAACTACTGGTAGTCTTTTGAAACACCAACACAT
TTGTGACAACACGAAATCGACACCGCCTGTTGCCCCATTCCCCCCCCCCC
CGTCGCAGGAAATCGAAGGCTGCGACTGCGGCACGGCCGAGCTGGAACCG
GCCTTCGCTGCCTACTTCTGCGAGAACGGGAAGTCCATGTACTGCGACCT
CGAGTGCGTGGACGGCTCGGACCCGGACGACGCCCTGTTCCCCTCGATGG
GCGGCCTTTGGTGCCAGCCGGAGGGCTGGGAGGGGTGCCGCATGTGCAAG
TTCGACTGCGCGGACTACGAGGGCGATGCCTGTGTCCCTTGCCCGTCCGG
GTTGAAGGACTGGTGTTAAGAGAGGCACCGTTGAGCTTGACGCGGCTGAC
CTTGAGCCAAAAGATGCCTGGTAGCGGGCGTTTAGAAGTACAGTAGTGGC
AGCGAGAGCAGAGCGAGGAGGTGGCATATGCCGCAGTGTTTGGTTCTGCA
AGATAACTAGCCCGGCACGACCGTGAAGTTGCGGTTTGTCGAAGAGCCGG
CCTCCTAATTTTTGCCTTTATTCGGCTCCATCTGTTGCTTTGCGTCTGGC
TTTGCAATGCCGGGTTGGGTGCCGTGGATTCGACTGCTGTGTTTTGATGC
CATTTCTCACCCAATCGAAGAAGGCGGTGTGGCAGGGAGGGAGAGCGAGA
GTCATGTGTGGGGTGGCACCACAAGATGGTGTAGCCGGGGGGCGTGAGCT
GTGAGGGCGAGCGACGCACGCCGGCCATGCTGGATCAAAGAGACGAGAGG
TCGCGAAGTTGTTCTTTTTTTCGTGGCGGGGGCGCGTTCAATGCTCTTCC
GTCGACCGCCACGAGCTTGCCACGACAGATGAATGAGTGTGTTTTCTCAA
AGAGCCTTGTCGCGCTGCTGCTGTCTTTTTGTGCTCTCAGGTGTGTCTTG
TCCGAGCGAACGGAAGGGTTTGATTTGGGTGGGGCATGGATCGCTGTTGG
GACCGTGGCTTTTTTTGCGTGATGTTGTTGTGTTCGTGTTCCGTGGCATT
TCGAAGCCTTGCGCTCGCTGCTGCCATGGCGTTCTCTTCGTTCCGCGGGA
GGTACAACATACGTTCTACATAGCCACGATAGCCATCCAGCCAGACAGGA
GGGAGATATCTTAGGGCAGTATGCTTACAAAGGTCGAGAATCGATGTCGT
TGCTCACTAAGAGCAGCACGGTGCGTGGGTGAACGAACGGACCGCTGGAA
CATTTCGATCGATCGGGTCGCACCGGCCGGCTGTGCTGCATGCGGCGCCT
GCGCTTTCAACTGAAGGCCTACGTTTTCGCTTTCGACGGTATGCAATATG
AAAACCGGGGTGACTTCAAACAAGTTTCGATTTGTTTCCCTGGATGAAGA
AGCTGCAGCGGTGGCGGGGACCCGAGGGGGCAGGGTGCCGGGGAGGGGTT
ATTTTGCGAAACATGACAGATTATTAGTTTTGGGAAGCAATATGTTTTCG
GGTTATTTGTCCCGTGTTCAAACTTTTAGTGTTCACGGGTTGTTTCTATC
TGGGCCGCCGGGGCAGAAGGAGAGCAAACAAAACTTGCATGTTCAAAGGG
AGATAATCTAGAATCGTATCCCATGTGGCCGTTCTATTGAAGATCGGCTA
GGGGGGAGGTGGGGGGTGCACGCTATAGGGCAGCACCTTGATGGTTTGAA
TTCGTATGTTACGCCTGTTCTATTTAGATTTTGGCTCTTTTCTGGTTTTG
AAGGAGAGGCCGTTTACATACAAACCACAGGTTTATCTTCTTGTCCACGC
CGCAATCCTTTCGGTACTTCTTTTGACCATTGTCCTCCGTGAAACAACTT
GCATATTACAAGTAGGTTCTAGCGGAATGTTTTTTGTTTTGTCGAAAGGC
TCTCGCGTGTTTGCTACTTATTATTGCGTGTTTGGTTACCGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6761:645..5537+

>mRNA_Ecto-sp13_S_contig6761.17681.1 ID=mRNA_Ecto-sp13_S_contig6761.17681.1|Name=mRNA_Ecto-sp13_S_contig6761.17681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6761:645..5537+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGGCTTTGCGAGCAGTGCCGCGGATGCTTCGAAACGTGCGAGGG
TGCGATGCTGTTCATGGAAGAAACCTCGTCGCCCGCGGACTACATCACGT
TCTGTTCCGGCATCGGCATCGCCGACATGGCTCAATGCGAGGACGACGTG
TACGGCAGCGGGGCCGGGTCCGGGTCCATGTCCAGCGGGGGCTCCGCTTA
CGGATCCGGCAGCGGGGCCGGAGGGGGGTCCGAGATGTCGCAAGGGGGCT
CCGCATACGGATCTGGTAGCGGGGCAGGAGGCGGGTCGATGTCGAGCACC
GCCAGCGGTGCGGGCAGCGGTTCGGGCGGAATCGCCGGCGACAGTGCGTC
GGGCAGCGCGCTCGACAGCGCGTCGGAGGGGGTGACCGCCGAGTACGGCA
GCGGCAACGGCAGCGGTGCCGGGAGCATGTCGAGCAGCGCGGGTACTGCC
AGCGGAAGCGCAGACGCCAGCGGTGCCGGGAGCATGTCGAGCAGCACGGC
TACTGCCAGCGGAAGCGGGGACGCGAGCAGGGTGACGGAAATCGAAGGCT
GCGACTGCGGCACGGCCGAGCTGGAACCGGCCTTCGCTGCCTACTTCTGC
GAGAACGGGAAGTCCATGTACTGCGACCTCGAGTGCGTGGACGGCTCGGA
CCCGGACGACGCCCTGTTCCCCTCGATGGGCGGCCTTTGGTGCCAGCCGG
AGGGCTGGGAGGGGTGCCGCATGTGCAAGTTCGACTGCGCGGACTACGAG
GGCGATGCCTGTGTCCCTTGCCCGTCCGGGTTGAAGGACTGGTGTTAA
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