mRNA_Ecto-sp13_S_contig676.17679.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig676.17679.1
Unique NamemRNA_Ecto-sp13_S_contig676.17679.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig676.17679.1 vs. uniprot
Match: D8LQQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ3_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 6.240e-51
Identity = 82/108 (75.93%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 IELFWPMTLKSLKVEYQADDMEDGEEDLAVLMLRNRTAFEKLAGHSPNDEKPSGTKTLKRHTQTERGRSMRHVRCKGGYGVDRPYAVTIARECRHSLAPHVYATVRYW 324
            +E FWPM LKSLK+EYQADDMEDGEE L VLMLRNRTAFEKLAGHSPNDEKPSG K L      +R          GGYG DRPYAVTIARECRHSLAPHVYATVRYW
Sbjct:   10 LEFFWPMELKSLKLEYQADDMEDGEEGLTVLMLRNRTAFEKLAGHSPNDEKPSGAKILNLDKCKQRDIHATRSLPIGGYGFDRPYAVTIARECRHSLAPHVYATVRYW 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig676.17679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQQ3_ECTSI6.240e-5175.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig676contigEcto-sp13_S_contig676:14732..15388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001880.1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.2007992-UTR-Ecto-sp13_S_contig676:14731..147491681463929.2007992-UTR-Ecto-sp13_S_contig676:14731..14749Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig676 14732..14749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463929.212143-CDS-Ecto-sp13_S_contig676:14749..147701681463929.212143-CDS-Ecto-sp13_S_contig676:14749..14770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig676 14750..14770 +
1681463929.2235723-CDS-Ecto-sp13_S_contig676:15100..153881681463929.2235723-CDS-Ecto-sp13_S_contig676:15100..15388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig676 15101..15388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig676.17679.1prot_Ecto-sp13_S_contig676.17679.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig676 14750..15388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig676.17679.1

>prot_Ecto-sp13_S_contig676.17679.1 ID=prot_Ecto-sp13_S_contig676.17679.1|Name=mRNA_Ecto-sp13_S_contig676.17679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MTLKSLKVEYQADDMEDGEEDLAVLMLRNRTAFEKLAGHSPNDEKPSGTK
TLKRHTQTERGRSMRHVRCKGGYGVDRPYAVTIARECRHSLAPHVYATVR
YW*
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mRNA from alignment at Ecto-sp13_S_contig676:14732..15388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig676.17679.1 ID=mRNA_Ecto-sp13_S_contig676.17679.1|Name=mRNA_Ecto-sp13_S_contig676.17679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig676:14732..15388+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGAACTCTTCTGGCCGATGACGTTGAAGTCGTTGAAGGTGGGTGTGTT
CTTCAGCAGCAGCAGCACCCTCTCTATCCCCCACCAATTCGCACCGCAGG
AGTTTTCGCCAAAGGTATCTATCCCCTAGTGGCAGATAGGCTCAACAAAA
ACGAAGAGGGGGGGGAAGACGTATGTACAGAGATGTTCCGTCCTGCCGCG
TATGGGTGAAGTTGCACTACTTGTTACTCTCGTGAGGGGGGCACGCGGCC
ATGGCACGATGCGGCGGGACTTCGTACGGTACGTCAGACGTTTCCGATGT
AAGATGGAAGTCAAGTTTCAAGTTTCAAGTTTTCACGAATTCGACGAGGC
TGACTTGCCGCTCATAAAGGTAGAGTACCAAGCCGACGACATGGAAGACG
GAGAAGAAGATCTCGCGGTGTTGATGCTGCGTAACCGCACGGCGTTCGAG
AAGCTAGCGGGCCACTCACCAAACGATGAAAAGCCTTCAGGTACAAAAAC
ACTAAAAAGGCACACGCAAACAGAGAGAGGGAGATCCATGCGACACGTTC
GTTGCAAAGGCGGGTATGGCGTTGACCGACCTTACGCCGTTACGATCGCG
CGTGAATGCCGTCATTCTCTCGCGCCGCATGTTTACGCCACGGTCCGGTA
TTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig676:14732..15388+

>mRNA_Ecto-sp13_S_contig676.17679.1 ID=mRNA_Ecto-sp13_S_contig676.17679.1|Name=mRNA_Ecto-sp13_S_contig676.17679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig676:14732..15388+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTTGAAGTCGTTGAAGGTAGAGTACCAAGCCGACGACATGGAAGA
CGGAGAAGAAGATCTCGCGGTGTTGATGCTGCGTAACCGCACGGCGTTCG
AGAAGCTAGCGGGCCACTCACCAAACGATGAAAAGCCTTCAGGTACAAAA
ACACTAAAAAGGCACACGCAAACAGAGAGAGGGAGATCCATGCGACACGT
TCGTTGCAAAGGCGGGTATGGCGTTGACCGACCTTACGCCGTTACGATCG
CGCGTGAATGCCGTCATTCTCTCGCGCCGCATGTTTACGCCACGGTCCGG
TATTGGTAG
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