mRNA_Ecto-sp13_S_contig6755.17673.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6755.17673.1
Unique NamemRNA_Ecto-sp13_S_contig6755.17673.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: D8LAU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU0_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 2.010e-160
Identity = 219/296 (73.99%), Postives = 237/296 (80.07%), Query Frame = 1
Query:  112 EQLQTEEKQETSGGIP---HAIVPGIAAPQLKGGGEGEGPHHIKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERARKDALIKAKEELSCIDNFLPDEVLPCKENDRSSIYELDRDGHAYGSIYDLRKAKILDFNAVETWVPFYEKIAYEDMLVGERLRDWLRSLETKYGLVGNYVGVPDSALEESMALSRSRMYYTNSEHCAPNCT 990
            EQ   EE   TS G+P   HA     AAPQ+KG  EGEG HHI+YIS++AERHSGS W TGFL  YFR  DV VTPTLCTWKHWFQDRIHQD++DGKRPCR +Q+CPACLDTEHTLVV MWRNPYDWISGMH NPHHAKAHRGVQDL +FMTMPWIM PE                L CIDNFLP+EVLPCKENDRSSIYELDRDG AYG+IY+LRKAKILDFNAVETWVPFYEK+ YEDMLVG  LRDWLRSLETKYGLVGNY+ VPD+ L+ +MA     MYYTNSEHCAPNCT
Sbjct:    7 EQQPAEEAPNTSIGVPSFEHA-----AAPQIKG--EGEGAHHIRYISVVAERHSGSRWFTGFLREYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE----------------LPCIDNFLPNEVLPCKENDRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWRNMYYTNSEHCAPNCT 279          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: D8LAT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT9_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 5.470e-154
Identity = 205/270 (75.93%), Postives = 224/270 (82.96%), Query Frame = 1
Query:  181 AAPQLKGGGEGEGPHHIKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERARKDALIKAKEELSCIDNFLPDEVLPCKENDRSSIYELDRDGHAYGSIYDLRKAKILDFNAVETWVPFYEKIAYEDMLVGERLRDWLRSLETKYGLVGNYVGVPDSALEESMALSRSRMYYTNSEHCAPNCT 990
            AAPQ+KG  EG+  HHI+YIS+++ERHSG TWMT FL  YFR  DV VTPTLCTWKHWFQDRIHQD++DGKRPCR +Q+CPACLDTEHTLVV MWRNPYDWI GMH NPHHAKAHRGVQDL +FMTMPWIM PE                L CIDNFLP+EVLPCKEN RSSIYELDRDG AYG+IY+LRKAKILDFNAVETWVPFYEK+ YEDMLVG  LRDWLRSLETKYGLVGNY+ VPD+ L+ +MA   S MYYTNSEHCAPNCT
Sbjct:   31 AAPQIKG--EGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE----------------LPCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCT 282          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: D7FTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA1_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 1.080e-142
Identity = 201/262 (76.72%), Postives = 210/262 (80.15%), Query Frame = 1
Query:  181 AAPQLKGGGEGEGPHHIKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERARKDALIKAKEELSCIDNFLPDEVLPCKENDRSSIYELDRDGHAYGSIYDLRKAKILDFNAVETWVPFYEKIAYEDMLVGERLRDWLRSLETKYGLVGNYVGVPDSALEESMALSRSRMYYTNS 966
            AAPQ++GGGEGEGPHHIKYISLIAERHSGSTWMTGFL+RYFRHSDVKVTPTLCTWKHWFQDRIHQDI+DGKRPCR+HQ+CPACLDTEHTLVVAMWRNPYDWISGM  NPHHAKAHRGVQDLSE+MTMPWIMQP+NEERARKDALIKAKEE                                         AKILDFNAVETWVPFYEKIA EDML GE L DWLRSLETKYGLVGNY+ V DSAL ESMA SRS MYYTNS
Sbjct:   10 AAPQIEGGGEGEGPHHIKYISLIAERHSGSTWMTGFLSRYFRHSDVKVTPTLCTWKHWFQDRIHQDIQDGKRPCREHQQCPACLDTEHTLVVAMWRNPYDWISGMQSNPHHAKAHRGVQDLSEYMTMPWIMQPKNEERARKDALIKAKEE-----------------------------------------AKILDFNAVETWVPFYEKIADEDMLDGETLGDWLRSLETKYGLVGNYIDVLDSALGESMAHSRSHMYYTNS 230          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: A0A6H5LNE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE9_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 8.750e-129
Identity = 175/259 (67.57%), Postives = 204/259 (78.76%), Query Frame = 1
Query:  211 GEGPHHIKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERARKDALIKAKEELSCIDNFLPDEVLPCKENDRSSIYELDRDGHAYGSIYDLRKAKILDFNAVETWVPFYEKIAYEDMLVGERLRDWLRSLETKYGLVGNYVGVPDSALEESMALSRSRMYYTNSEHCAPNC 987
            G GP  IKYISLI ERHSG+TWM  FL  YFR  D+ VT TLCTWKHWFQDRI+QDI+DGKR CR+ Q+CPAC D  HTLVVAMWRNPYDW+SGMH  P HA+AH  + D+S+FMTMPWIM  E E++ARK+ALI+ K+EL CIDNFLP EVLPC+  D S+IYELD  G AYG+IY+LRKAKI DF+AV+ W P+YEKI YEDML  + L+ WL SL+T YGL GNY  VPDSAL   M  SR +MYY NS+HCAP+C
Sbjct:   94 GVGPLKIKYISLIGERHSGTTWMVKFLQDYFRDKDITVTATLCTWKHWFQDRIYQDIQDGKRLCREGQQCPACKDINHTLVVAMWRNPYDWVSGMHKIPWHAQAHASIPDMSKFMTMPWIMGAEEEKQARKEALIRTKDELPCIDNFLPWEVLPCRPGDESAIYELDPGGEAYGNIYELRKAKIRDFDAVKMWAPYYEKILYEDMLAKDGLKMWLMSLDTLYGLGGNYKSVPDSALAVKMESSRKQMYYMNSQHCAPHC 352          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: D8LB15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB15_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 2.410e-63
Identity = 93/133 (69.92%), Postives = 104/133 (78.20%), Query Frame = 1
Query:  211 GEGPHHIKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPE--NEERARK 603
            G GP  IKYISLI ERHSG+TWM  FL  YFR  D+ VT TLCTWKHWFQDRI+QDI DGKRPCR+ Q+CPAC D  HTLVVAMWRNPYDWISGMH  P HA+AH  + D+S+FMTMPWIM  E  +  RAR+
Sbjct:    4 GVGPLEIKYISLIGERHSGTTWMVKFLQDYFRDKDITVTATLCTWKHWFQDRIYQDIHDGKRPCREGQQCPACKDINHTLVVAMWRNPYDWISGMHKIPWHAQAHASIPDMSKFMTMPWIMGAEVRDHRRARR 136          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: A0A7S3UU09_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU09_HETAK)

HSP 1 Score: 130 bits (327), Expect = 2.180e-31
Identity = 93/287 (32.40%), Postives = 144/287 (50.17%), Query Frame = 1
Query:  148 GGIPHAIVPGIAAPQLKGGGEGEGPHHIKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAH-----RGVQDLSEFMTMPW-IMQPENEERARKDALIKAKEELSCIDNFLPDEV-LPCKENDRSSIYELDR-DGHAYG--SIY----DLRKAKILDFNAVETWVPFYEKIAYEDMLVG--ERLRDWLRSLETKYGLVGNYVGVPDSALEESMALSRSRMYYT 960
            G   + +   I     K   +  GP  I+ I+LIAERHSGSTW+   L   F    V+V  ++C +KHWFQDR  ++   GKR C +   C  CL+ E T++  +WRNPYDWI  ++  P H+ +H     +G  D   F+   W +  P  +   +K    K   +  C+DNF  +++   C +   S+IYE    D H  G  S Y    ++R AKI DF +V  W P +  + YE +L G  + LRD+  ++  ++ L  +    P+   E  +  SR+++  T
Sbjct:   39 GNSTYELAKDIRRTTKKANNKDGGP--IRRIALIAERHSGSTWLFKVLQEAF--PGVQVQQSVCMYKHWFQDRHREETISGKRGCSKGY-CFPCLNPESTIIFNLWRNPYDWIVALNEIPWHSISHGYYSKKGHIDFIAFVNKEWKVHGPARQYMLKKQG--KKALQAPCLDNFQKNDLDFVCSK--ASAIYETTAGDPHYNGTQSYYAGPLEMRAAKIRDFMSVGKWAPNFYTVTYEALLFGGYDGLRDYFDAVAQRHNLTHH----PEKYRELVLPTSRNKLLST 312          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: A0A7S2K8J0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8J0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.360e-26
Identity = 78/220 (35.45%), Postives = 103/220 (46.82%), Query Frame = 1
Query:  238 ISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERARKDALIKAKEELSCIDNFLPDEVLPCKENDRSSI-------------------YELDRDGHA--YGSIYDLRKAKILDFNAVE--TWVPFYEKIAYEDML 828
            ISLI ERHSG+TWMT  L + F   D+K  P L  WKHWFQD+   D ++ K                 T+V+A +RN YDW   M   PHH+  H  +    EF+T PW M      R  +D  IK K+ + C +NF  DE++ C    R S                    YEL  DG    Y +I ++R  KI +F AV    WV  +  I YE ++
Sbjct:  127 ISLIGERHSGTTWMTNELQKCFPTLDIK--PKLVRWKHWFQDKRIVDAKNQKP----------------TMVIAQFRNIYDWTEAMRQGPHHSPYHLRL-GWEEFVTKPWTMP-----RPARDLDIKDKKTIRCQENFGYDEIVSCVRGRRVSFPNQKVREQSLTNYSGHNPQYELRNDGSGLPYSNIIEMRSDKIRNFLAVSKWNWVKHFLAIKYETLV 322          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: A0A7S0G6T5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G6T5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.080e-22
Identity = 70/259 (27.03%), Postives = 119/259 (45.95%), Query Frame = 1
Query:  229 IKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERARKDALIKAKEELSCIDNFLPDEVLPCKE------------NDRSSIYELDRDGHA--YGSIYDLRKAKILDFNAVETW--VPFYEKIAYEDMLVGERLRDWLRSLETKYGLVGNYVGVPDSALEESMALSRSRMYY 957
            +  ISL+ ER++G+ W+T  L++ F    +K +  L  WKHWFQD    D  + +R              + TLV+AM+RNPY+W+  M   PHH+ +H  ++    F+T PW M      R   D +        C + F   +V+ C+             +    IYE+  DG    + +I ++R AKI +   V+ W  +     + YED+L  +   +++++LE   G+  +    P     +   LS+  + Y
Sbjct:   56 VMEISLLGERNTGTNWVTALLSKCF--PGIKTSARLVRWKHWFQD---DDSNENER--------------QKTLVIAMFRNPYEWVMAMRKTPHHSPSHLRLK-WQNFVTKPWTMT-----RPESDLVFSNSTGQICHEKFAYKDVISCQRQPPELMSSTGGYSSGKPIYEMRHDGSGKPFANILEMRAAKIHNHLGVQEWPWISGVHVVRYEDLLE-DGTGNFIKNLEKLTGVTASCKAEPPQPKRKKRKLSKEFVKY 288          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: K0RDY6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RDY6_THAOC)

HSP 1 Score: 104 bits (260), Expect = 3.350e-22
Identity = 85/277 (30.69%), Postives = 123/277 (44.40%), Query Frame = 1
Query:  241 SLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLS------------EFMTMPWIMQPENEERARKDALIKAKEE------LSCIDNFLPDEVLPC-------KENDRSSIYELDRDG--HAYGSIYDLRKAKILDF------NAVETWVPFYEKIAYEDMLVGERLRDWLRSLETKYGLVGNYVGVPDSALEESMALSRSRMYYTNSEH 972
            +LI ERHSG+ W+   L   F    + V      +KHWFQ      +R+G+                  +V+AM+R+PYDW+  M   PHHA  H    DL             +F++ PWI  P     A KD +++AK E        C+  +  DEV+PC       KE   S +YEL  DG   AYGSI DLR+ K+L+F      N V  + P      YE +++ +   D+L+SLE   GL         + + +   +    M + N  H
Sbjct:   24 NLIGERHSGTNWINDHLQDCFG-DQIAVESEFTRFKHWFQF-DDSSVRNGE-----------------AVVIAMFRDPYDWVEAMRERPHHAHDHADCTDLECPDCECRSMDWKDFVSKPWIG-PRGP--ADKDLMVRAKAEGRKLEVEGCLAGYRFDEVIPCLPEDSVDKEGYSSYMYELMHDGSNRAYGSIIDLRREKLLNFLTVPRMNGVRAFFPQ----RYEGLVL-KGTGDFLKSLEEVTGLTAKCTPFEGTGVVKHKNVEPEFMEWMNEYH 273          
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Match: B8BQL9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQL9_THAPS)

HSP 1 Score: 107 bits (266), Expect = 6.960e-22
Identity = 68/199 (34.17%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  214 EGPHHIKYISLIAERHSGSTWMTGFLNRYFRHSDVKVTPTLCTWKHWFQ-DRIHQDIRDGKRPCRQHQKCPACLDTEHTLVVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERARKDALIKAKEELS---CIDNFLPDEVLPCKENDRSSI-------YELDRDG--HAYGSIYDLRKAKILDF 771
            EGP  +  I+LI ERHSG+ W+T  L   F    ++V      +KHWFQ D  H                   +  +  +V+AM+R+PYDW+  M   PHHA  H G++   +F+T PW+      +R R +   + ++ +    C+  +  DEV+PC   D  +I       YEL  DG   AYGSI DLR+ KI++F
Sbjct:  118 EGP--VTSINLIGERHSGTNWITDHLEDCFG-DQIQVQTNFTRFKHWFQFDDPH-------------------VRNDSAVVIAMFRDPYDWVEAMRERPHHAHDHIGME-WKDFVTKPWVGPRGPADRVRMEQSKRDRQPIEYAGCLAGYKFDEVIPCSTEDSVNIDGYSGYMYELMHDGSHRAYGSIVDLRREKIVNF 293          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6755.17673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAU0_ECTSI2.010e-16073.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LAT9_ECTSI5.470e-15475.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTA1_ECTSI1.080e-14276.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LNE9_9PHAE8.750e-12967.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB15_ECTSI2.410e-6369.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UU09_HETAK2.180e-3132.40Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2K8J0_9STRA1.360e-2635.45Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S0G6T5_9STRA1.080e-2227.03Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0RDY6_THAOC3.350e-2230.69Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BQL9_THAPS6.960e-2234.17Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6755contigEcto-sp13_S_contig6755:3241..8007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score461.8
Seed ortholog evalue2.6e-127
Seed eggNOG ortholog2880.D8LAU0
Model size990
Hectar predicted targeting categorysignal peptide
Exons9
EggNOG OGs2EKXM@1,2SQQN@2759
Cds size990
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6755.17673.1prot_Ecto-sp13_S_contig6755.17673.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6755 3241..8007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463928.5710735-CDS-Ecto-sp13_S_contig6755:3240..33931681463928.5710735-CDS-Ecto-sp13_S_contig6755:3240..3393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 3241..3393 +
1681463928.5839703-CDS-Ecto-sp13_S_contig6755:3526..37211681463928.5839703-CDS-Ecto-sp13_S_contig6755:3526..3721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 3527..3721 +
1681463928.594801-CDS-Ecto-sp13_S_contig6755:4587..47581681463928.594801-CDS-Ecto-sp13_S_contig6755:4587..4758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 4588..4758 +
1681463928.6059206-CDS-Ecto-sp13_S_contig6755:5078..51411681463928.6059206-CDS-Ecto-sp13_S_contig6755:5078..5141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 5079..5141 +
1681463928.6170325-CDS-Ecto-sp13_S_contig6755:5798..58461681463928.6170325-CDS-Ecto-sp13_S_contig6755:5798..5846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 5799..5846 +
1681463928.6333232-CDS-Ecto-sp13_S_contig6755:6246..63691681463928.6333232-CDS-Ecto-sp13_S_contig6755:6246..6369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 6247..6369 +
1681463928.6448708-CDS-Ecto-sp13_S_contig6755:6644..67631681463928.6448708-CDS-Ecto-sp13_S_contig6755:6644..6763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 6645..6763 +
1681463928.6565971-CDS-Ecto-sp13_S_contig6755:7376..74691681463928.6565971-CDS-Ecto-sp13_S_contig6755:7376..7469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 7377..7469 +
1681463928.67213-CDS-Ecto-sp13_S_contig6755:7982..80071681463928.67213-CDS-Ecto-sp13_S_contig6755:7982..8007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6755 7983..8007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6755.17673.1

>prot_Ecto-sp13_S_contig6755.17673.1 ID=prot_Ecto-sp13_S_contig6755.17673.1|Name=mRNA_Ecto-sp13_S_contig6755.17673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=330bp
MVNKFRRVAAVLLVLLARASPRDAKVAFAAAARNLSTEQLQTEEKQETSG
GIPHAIVPGIAAPQLKGGGEGEGPHHIKYISLIAERHSGSTWMTGFLNRY
FRHSDVKVTPTLCTWKHWFQDRIHQDIRDGKRPCRQHQKCPACLDTEHTL
VVAMWRNPYDWISGMHFNPHHAKAHRGVQDLSEFMTMPWIMQPENEERAR
KDALIKAKEELSCIDNFLPDEVLPCKENDRSSIYELDRDGHAYGSIYDLR
KAKILDFNAVETWVPFYEKIAYEDMLVGERLRDWLRSLETKYGLVGNYVG
VPDSALEESMALSRSRMYYTNSEHCAPNCT
back to top

mRNA from alignment at Ecto-sp13_S_contig6755:3241..8007+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6755.17673.1 ID=mRNA_Ecto-sp13_S_contig6755.17673.1|Name=mRNA_Ecto-sp13_S_contig6755.17673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4767bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6755:3241..8007+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAAACAAATTCCGGCGTGTCGCCGCCGTGCTGCTGGTCCTGCTTGC TCGGGCTTCACCAAGAGATGCAAAAGTGGCATTTGCAGCAGCAGCGAGAA ACCTGTCGACTGAGCAGCTGCAGACTGAGGAGAAACAAGAAACATCAGGT GGGGTCCAGAGGCTTGAACTCCGAAATAACCGAACCAGCGGTTGACGTCT CACGCATGGGCGATGATTCGGCATGGGCGGTTGTTGTACCAACGTCGCTG AGGCGTGCGCTATCCTTTGGGATTGTTCTTGACCAGATTCCCCATGCTAT TGTGCCTGGCATCGCAGCACCTCAATTAAAAGGAGGGGGAGAGGGAGAGG GTCCTCACCACATCAAGTACATCTCTCTCATCGCCGAGCGTCACAGCGGC TCCACGTGGATGACTGGTTTCCTCAACAGATACTTTCGACACAGCGATGT CAAGGTCACCCCAACGCTCTGCACCTGGAAGGTTTGTTTACTCTGTCTGA CGATGTGATTGTGACGTCCGGCGTATCGTTGACCCGGTGAGGACGTGTGA AGATCTACTGGACGGCGGCAGCAACCGTAGCAGCAACAACGTGAAGCGTT AGCACGCCACACCCGAAAAGGGCGAGAAGGCCACTTCTTCGGCAAAGTCG CTTTCCGTATTCTAGTCGACGCTTTGAACATCCGACCAACGCCGGGTCCT CACGGATGGCGGCAAAGCGTGGTATGCATAACACCGACAAGAAGAGCATT TTCTCGCAACGAAGTCAAACTCGACACACTAGCATCACCTCCTTCTTGTT AATCGTTAGTCATGCTGATCGGTTCCACCGCCAGATGTCGATATTCATCC CGTACTTGCCGCTTTCGTGCCGGAAAAAATTTATTGAACTCACGTTAGCC CTCCCTGTGTCGTCATCGGGTTTGCTGACGGGACTACAGTAGTCCATTCG GAAGTGGTTCTTGCATTTTTCCCGGACGATTCTCCTAACTAACCCTGAAA CGTTGAACGTCGAAGGGTGGGCTTGTGCGGTGCCCTGCTGGTTGGACCCT GAGGGTTAAGCCGTAAAAACCTCTATGGTGCAAATGGCTGTGTCATGGAC GTAAATGGCTTGAATTACGCAGCATCTTTTTTCCCGGAGGCGTTCGTGCT CATATGGACTTCGGCTACGTTTCGTTCCGCGTGAAAAGCCATCGCCAATA CCCAGGTCTTCCACAGTTTTCACAAGCAATTTGGTTGAAGCACGGCAGCA AATACCTGGACAGCGTCACTCTCTCTTAAACACCCGTTGCTTCTAGCCTT CTGCGTATTTAGTGTTGATGTCCCCCACTTGTCTAATTCTCGTTCAGCAT TGGTTCCAAGATCGTATCCATCAAGACATCCGAGACGGTAAACGCCCCTG CCGACAGCATCAAAAGTGCCCCGCGTGCTTGGACACAGAACACACCCTGG TGGTTGCCATGTGGCGCAACCCGTACGACTGGATCAGCGGAATGCACTTC AACCCACACCACGCTAAGGTATCTGGCAAGCGCAACTAATTATAGGCTTG GGAAATATCAGGACTTGTTAGGCCCATGAAACAGCAGCATTCACTTCGAA TGTTTGGATTGACCCGTTTGCGAGGACACATGCAGGGGTCCGAGAGCAAT GCCGCAGCTCCAAGGCCGTGCTGAAACCAGAAACAAATACAAAATGGTTG GTATCCTGGCACTACCGGCACAGCCTCGGGGACTCTTTCAGAACAAAAAA AATCAAATTGAATAAAGCCGCAAACTCGTGCTAAGGCGCTGTGATGCCCA TTCATCTCGCTCTACCCGCGGGGGAACTAACTGCTCAGGCGCATCGTGGA GTACAGGACCTGTCGGAGTTTATGACCATGCCGTGGATAATGCAACCAGA GGTGAAGAAATCGCCTGGACGTTTTCCGTAAAAATGGGCGTGGCCATCCT AAAGTGTGACTGTTTGGCTCGTGTTCTTGTCAAGGACTTGACTCTCTCGG TGACCATGTATTGTTTTTGTTGGTGATGTTCTCATAGCTGCCGTCATCTT CGCCCTTGATGTTTCTGTTTCGTTTCTACTGAGGCCGTGTCCGTGTGGCT CTCACTGCTGCTACAGTTTCCTACATATGGTGCTTGCCCTTCACTCTCAA AACCGTTTGTTGAAATCTGCTCCCAGGGCCTCAATGCACTGCTCCTTTTT TTCGTTTTTTTTCTGTAGGGGGGTGGTTTTACGAAAGAAATGATAAGAGC GAAATAAGCGCGCTCGAGTCAGGTTTTTTGCGGGAAGCCCCGGACCTGAG TTTTTCTCGTTTTTCTTTAAGGTATCAGGTTCGTACATGTTTGTAGTCCG CAAGGATTGGTCTACTTCAGTCGGCTCAGCAACAGTATCGAGTCAGGCTT GCGGGAGTCCCGGACGTGATTTTTCCTTTTTGATTTCAAATTCACGTTTT GGGAGGAGTCAGTCCGCATGGGCCGACTTCAGGTGGTGCAACATCAGTAT GAAGCCAACAACAGCCAACTCGCCGTGCTGTACGGCCTCCTCCGTGAAAA CGATACAGAACGAGGAGCGCGCGAGGAAAGACGCTTTGATAAAGGCAAAG GAGGAGGTGAGCTTCCGCGCACGCCCCCCGGACAACACTTTTTCGCTTTT GGCCCTACGCTATACGACAAGTTTGGATTTTGGAGGTAGGCTACACTACA CCTACGAAACAGCGCGGAAATTCGGTCTGTTTTCGAAACGAGCCGCAGTC GTGAACAGCACGGTCGCGTCGCTCGTGGGGAGAAGGGTGCCACTGCCACG TGACGGTCGGTCGCCGAGCGTTGATCTGCGTCAAAACCGCCCGAGACACC GGGCGGGACACGGGGAGTCGACAGCGACTGGTGGCACTCGGGGAAAATTC ATTGCCAGTACACCGTCATCGTGAGACAAAACCCAGGGACGTTCTTGCTT GCAATGTCTCTCTTTCGTTGTGGTTCGTGCGTACATGCCTATCAAATTTC CTCCAGCTTTCGTGCATCGACAACTTCCTGCCGGATGAGGTACTGCCCTG CAAGGAAAACGACAGGTCGTCCATCTACGAGCTAGACCGCGACGGACACG CGTACGGGAGCATCTACGATCTGAGGAAGGTGCACGCCGAGCGGCCACTG CTGTATCTGAAACTGCGCAACCTCGACTTCAAGAAGACCCTGCATCTCGC GTAGCATGCATCCTCACGGTCCATACTGTATAGGTCATGTTTGTTACTTT TTGCTCGGGCCACTCATGGCTCTGATGCGTGTCTGTTTACCGTTCGTTGT GGTAGAACCTCGTTACTTCAGAATGCACTCTTATTTCGTTTCCTTTTCGT TGACTTTCTTGGTCTGTCCTTGTGCCCCTTGTTGCGTGTGTTGGGTGGAC CAAGGCCAAAATCCTTGACTTCAACGCCGTCGAGACCTGGGTGCCGTTCT ACGAGAAGATTGCGTACGAAGACATGCTTGTCGGTGAAAGGCTCAGGGAT TGGCTCAGGTCGCTCGAGACAAAGTAAGCTTGCCCCACAACAAGAAACGC GTGTTCATTGACGGGTTCCTCTGCTAGAAGGCGTCTGTGGGTACCCCGAG AGCGGGAGAAGGCACGGAGTGTACACTGAGATGTTGCCGCTCGTGGTACG CTCGCGGGTAGTTTCCCCCTGCGGCGCGAGCTCCCGTATAGACCACCGTA CGTAACGTAAGATGCCGCACCCCCTTGACCGATTTTTTTGAAGCTCGGTT ACTCCACAGCAGAAAGAATGGCAGAGCCGAAAACGTCGACGCAAAACCGT CTTCCCATCGAGAGCTGTCCCAATACGCATCGCTCGACTCATACATCACC TTGGTCGTGGGAGATGGGAGCTAGCTGTGAAACTCGATCCAGGGGTCTAA GTATCTGGTGTAACCTACGGTATCCAGTCCGGGCACTGATGTACCGCCAC GAGGTTTCCTTTTTCTCGACGAAACCAACGCTCTGCACGGTGGTGTGCAG CGTTAGCTTGAGGAAGGAGGCATTCCTTGTGCAGTCGCGTCGGATGCCGC GGAGGGCGTTTTTCACCGCACGCATCAGCGCGTCCCGTCGACCGTAGCTC GTTGATGTTGTCGCCGCTGGTTTCTCGTGTGCCCAGGTATGGCCTCGTCG GGAACTACGTCGGCGTCCCGGACAGTGCTCTTGAGGAATCAATGGCACTC TCGCGCAGCCGCATGTACTACACGAACAGGTAAGAGTTCGGAAGAGAACC TGGCATGCCACGTCCCATTCTCTTTTTCATCGTTCTCTGAGGTTCGCTTC GAGTATATTCGTAGGTGTAGGTATTGCGGCTCGTGGTGATGCCCGGCGGG TCATACTTCAAAACCGAGGCGGACAAAGGGAAGCAGGCGTGAACACTCCA TTACACGCGCCGTACCCACCCTGCGTGCGTGTGGTGGGTGTGCCTGCACA AACGTAGGCGTAGTGAACACATCATATCCTTTTGACTGCAGGACTCGTAT CAGAATGGTATCAGGAGGTCTGGATCATCTCCACACACCCCCTTAGCCCC CATGTATGTGAACGGCGAATTAGCCTGGTTCAAGATGCAACGCAGTTATC GTCGAGAAACCTTTGTGTTCGCTCTCCACGGCAAAAGAAACATCCTGTTC CCCTCGTTGTTGTGTTTATTTCCATCCCACAATACTCTCCTCCTCCCTGC CTCATCTGGGCAAATACCGGCCACAAATAAACTGCGATCAAGCGAGCATT GCGCACCAAACTGCACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6755:3241..8007+

>mRNA_Ecto-sp13_S_contig6755.17673.1 ID=mRNA_Ecto-sp13_S_contig6755.17673.1|Name=mRNA_Ecto-sp13_S_contig6755.17673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6755:3241..8007+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAAACAAATTCCGGCGTGTCGCCGCCGTGCTGCTGGTCCTGCTTGC
TCGGGCTTCACCAAGAGATGCAAAAGTGGCATTTGCAGCAGCAGCGAGAA
ACCTGTCGACTGAGCAGCTGCAGACTGAGGAGAAACAAGAAACATCAGGT
GGGATTCCCCATGCTATTGTGCCTGGCATCGCAGCACCTCAATTAAAAGG
AGGGGGAGAGGGAGAGGGTCCTCACCACATCAAGTACATCTCTCTCATCG
CCGAGCGTCACAGCGGCTCCACGTGGATGACTGGTTTCCTCAACAGATAC
TTTCGACACAGCGATGTCAAGGTCACCCCAACGCTCTGCACCTGGAAGCA
TTGGTTCCAAGATCGTATCCATCAAGACATCCGAGACGGTAAACGCCCCT
GCCGACAGCATCAAAAGTGCCCCGCGTGCTTGGACACAGAACACACCCTG
GTGGTTGCCATGTGGCGCAACCCGTACGACTGGATCAGCGGAATGCACTT
CAACCCACACCACGCTAAGGCGCATCGTGGAGTACAGGACCTGTCGGAGT
TTATGACCATGCCGTGGATAATGCAACCAGAGAACGAGGAGCGCGCGAGG
AAAGACGCTTTGATAAAGGCAAAGGAGGAGCTTTCGTGCATCGACAACTT
CCTGCCGGATGAGGTACTGCCCTGCAAGGAAAACGACAGGTCGTCCATCT
ACGAGCTAGACCGCGACGGACACGCGTACGGGAGCATCTACGATCTGAGG
AAGGCCAAAATCCTTGACTTCAACGCCGTCGAGACCTGGGTGCCGTTCTA
CGAGAAGATTGCGTACGAAGACATGCTTGTCGGTGAAAGGCTCAGGGATT
GGCTCAGGTCGCTCGAGACAAAGTATGGCCTCGTCGGGAACTACGTCGGC
GTCCCGGACAGTGCTCTTGAGGAATCAATGGCACTCTCGCGCAGCCGCAT
GTACTACACGAACAGCGAGCATTGCGCACCAAACTGCACG
back to top