mRNA_Ecto-sp13_S_contig67536.17672.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67536.17672.1
Unique NamemRNA_Ecto-sp13_S_contig67536.17672.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: A0A6H5L4G2_9PHAE (Cation_ATPase_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G2_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.200e-55
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 ALAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEECT 273
            ALAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQEN+ECT
Sbjct:   84 ALAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENDECT 174
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: D7FY90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY90_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 9.600e-54
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 ALAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEECT 273
            ALAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQEN+ECT
Sbjct: 1344 ALAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENDECT 1434
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: A0A7S3Y248_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y248_HETAK)

HSP 1 Score: 140 bits (354), Expect = 1.070e-40
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    4 LAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEECT 273
            L E MGIETDWNCAISLRPL+    PDPHRM S YADWDVKARLPHG+  IR+HIE VDNVPLLVSLFTDAT  + K+ML ++QEN E T
Sbjct:   67 LVEKMGIETDWNCAISLRPLDVPGTPDPHRMTSHYADWDVKARLPHGVPAIREHIEKVDNVPLLVSLFTDATQVSTKEMLEVFQENLEVT 156
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: H3HB11_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB11_PHYRM)

HSP 1 Score: 136 bits (342), Expect = 9.520e-40
Identity = 62/84 (73.81%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:   16 MGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEE 267
            MGIETDWNCAISLRPL DS  PDPHRM S+Y+DWDVKARLPHG+  I+ H+  VDNVPLLVSL+TD+TPETI +M++I+QEN+E
Sbjct:    1 MGIETDWNCAISLRPL-DSDGPDPHRMTSNYSDWDVKARLPHGVEAIKRHLAEVDNVPLLVSLYTDSTPETISEMVSIFQENDE 83
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: A0A7S2SUQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUQ0_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.800e-39
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    4 LAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPE 225
            LAE MG+ETDWNCAISLRPL D S PDPHRMKSSYADWDVKARLPHG+  IR+H++SVDNVPLLVSLFTDAT E
Sbjct:   62 LAERMGLETDWNCAISLRPLTDQSAPDPHRMKSSYADWDVKARLPHGVEAIREHLDSVDNVPLLVSLFTDATQE 135
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: A0A425D5B9_9STRA (AGC-kinase C-terminal domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5B9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 7.230e-38
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    4 LAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEE 267
            LAE MGIETDWNCAISLR   DS  PDPHRM S+Y+DWDVKARLPHG A IR H+E VDNVPLLVSL+TD+TP+TIK+ML+I+QEN E
Sbjct:   40 LAEKMGIETDWNCAISLR---DSDGPDPHRMTSNYSDWDVKARLPHGTAAIRRHLELVDNVPLLVSLYTDSTPDTIKEMLSIFQENGE 124
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: A0A397A133_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A133_9STRA)

HSP 1 Score: 138 bits (348), Expect = 8.870e-38
Identity = 66/88 (75.00%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    4 LAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEE 267
            LAE MGIETDWNCAISLR   DS  PDPHRM S+Y+DWDVKARLPHG A IR H+E VDNVPLLVSL+TD+TP+TIK+M++I+QEN E
Sbjct:   77 LAEKMGIETDWNCAISLR---DSDGPDPHRMTSNYSDWDVKARLPHGTAAIRRHLELVDNVPLLVSLYTDSTPDTIKEMISIFQENGE 161
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BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: A0A3F2RI07_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RI07_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.740e-37
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:   16 MGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEE 267
            MGIETDWNCAISLRPLE S  PDPHRM S+Y+DWDVKARLPHG+  I+ H+  VDNVPLLVSL+TD+TPETI +M++I+QEN E
Sbjct:    1 MGIETDWNCAISLRPLE-SDGPDPHRMTSNYSDWDVKARLPHGVEAIKRHLAEVDNVPLLVSLYTDSTPETISEMISIFQENHE 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: A0A2D4BWP2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWP2_PYTIN)

HSP 1 Score: 141 bits (356), Expect = 3.660e-37
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    4 LAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEE 267
            LAE MGIETDWNCAISLRPLE S  PDPHRM S+Y+DWDVKARLPHG+  I+ HI  VDNVPLLVSL+TD+TPET+ +M++I+Q+NEE
Sbjct:  899 LAEKMGIETDWNCAISLRPLE-SDGPDPHRMTSNYSDWDVKARLPHGVDAIKRHIRDVDNVPLLVSLYTDSTPETVSEMVSIFQQNEE 985
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Match: K3WDV0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDV0_GLOUD)

HSP 1 Score: 140 bits (354), Expect = 6.830e-37
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    4 LAESMGIETDWNCAISLRPLEDSSQPDPHRMKSSYADWDVKARLPHGIADIRDHIESVDNVPLLVSLFTDATPETIKDMLAIYQENEE 267
            LAE MGIETDWNCAISLRPL DS  PDPHRM S+Y+DWDVKARLPHG+  I+ H+  VDNVPLLVSL+TD+TPETI +M++I+QEN E
Sbjct:  915 LAEKMGIETDWNCAISLRPL-DSDGPDPHRMTSNYSDWDVKARLPHGVEAIKRHLAEVDNVPLLVSLYTDSTPETISEMISIFQENNE 1001
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67536.17672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4G2_9PHAE1.200e-5598.90Cation_ATPase_C domain-containing protein n=1 Tax=... [more]
D7FY90_ECTSI9.600e-5498.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y248_HETAK1.070e-4073.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
H3HB11_PHYRM9.520e-4073.81Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2SUQ0_9STRA2.800e-3983.78Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A425D5B9_9STRA7.230e-3876.14AGC-kinase C-terminal domain-containing protein n=... [more]
A0A397A133_9STRA8.870e-3875.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3F2RI07_9STRA2.740e-3773.81Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A2D4BWP2_PYTIN3.660e-3773.86Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WDV0_GLOUD6.830e-3773.86Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67536contigEcto-sp13_S_contig67536:5..727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size276
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463928.498417-CDS-Ecto-sp13_S_contig67536:4..1521681463928.498417-CDS-Ecto-sp13_S_contig67536:4..152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67536 5..152 -
1681463928.512986-CDS-Ecto-sp13_S_contig67536:601..6211681463928.512986-CDS-Ecto-sp13_S_contig67536:601..621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67536 602..621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463928.5268593-UTR-Ecto-sp13_S_contig67536:621..7271681463928.5268593-UTR-Ecto-sp13_S_contig67536:621..727Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67536 622..727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67536.17672.1prot_Ecto-sp13_S_contig67536.17672.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67536 5..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67536.17672.1

>prot_Ecto-sp13_S_contig67536.17672.1 ID=prot_Ecto-sp13_S_contig67536.17672.1|Name=mRNA_Ecto-sp13_S_contig67536.17672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MQTGTSRLASRTASPTSETTSNPWTMCRSWSRSSLTPHRRRSRTCSPFTK
RTKSAR
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mRNA from alignment at Ecto-sp13_S_contig67536:5..727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67536.17672.1 ID=mRNA_Ecto-sp13_S_contig67536.17672.1|Name=mRNA_Ecto-sp13_S_contig67536.17672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67536:5..727- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTTGCCGAGAGCATGGGGATCGAGACCGACTGGAACTGTGCGATTTC
GCTTCGCCCGCTGGAGGACTCTTCGCAGCCGGACCCTCACAGGATGAAGT
CGTCGTATGCAGACTGGGACGTCAAGGTAGAACACAACGGCAACGGGCAA
CCTGCTGCAGCAATCGCAGCAGGAGCCGCGGCAGCAGCAGCAGCGCTTGT
AGCATTCTGCTCCTTTGCACTAGCTCTGAATAGTACCGTAGGTCACTGTG
GCCGTGGTCTTGCCAATAGGGGTGTTGAAGAAGGAAAGTTTCGTGGTTGG
TGCAAGTTGCACGGCGCCTGCTGCTGCGGTTGTCTTCGTTCCCGACCCTG
CCTTTCTCCCCGATTCTGTGCCCCTAAACTAGCCCGAAGTCTGGCGCTAT
CCCAGTCCGCAGCGTTAGCTTATCCTGGGGGCGACTACAACGTGGAGGCG
ATTTTTTAAAAGTTGGTCAACAGACTGCTTTGCTTCTTTCCCTTCTGTCA
GTGTTGTACACAGCTCTCGCCCTCGGTGTTGTGGTCTAATTTCCTTCCCT
CGATTGCCTTGACACCTCTTGGCAGGCTCGCCTCCCGCACGGCATCGCCG
ACATCCGAGACCACATCGAATCCGTGGACAATGTGCCGCTCCTGGTCTCG
CTCTTCACTGACGCCACACCGGAGACGATCAAGGACATGCTCGCCATTTA
CCAAGAGAACGAAGAGTGCACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67536:5..727-

>mRNA_Ecto-sp13_S_contig67536.17672.1 ID=mRNA_Ecto-sp13_S_contig67536.17672.1|Name=mRNA_Ecto-sp13_S_contig67536.17672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67536:5..727- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGACTGGGACGTCAAGGCTCGCCTCCCGCACGGCATCGCCGACATC
CGAGACCACATCGAATCCGTGGACAATGTGCCGCTCCTGGTCTCGCTCTT
CACTGACGCCACACCGGAGACGATCAAGGACATGCTCGCCATTTACCAAG
AGAACGAAGAGTGCACGC
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