mRNA_Ecto-sp13_S_contig675.17666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig675.17666.1
Unique NamemRNA_Ecto-sp13_S_contig675.17666.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 1.630e-131
Identity = 195/206 (94.66%), Postives = 200/206 (97.09%), Query Frame = 1
Query:  154 MAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEERPKK 771
            MAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVP E+WPTLKPTLPYQQMPVLEVDGAVIPQS AILRYVGK+GNLYPTDPIQAAFADSATDAVSDI GYMRGIIFEKDADKKAQLRKDLVETLLP WL NLEKALKLAGG+YFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLL+E PL+SSLVQRVMAEPRIVAYMEERPKK
Sbjct:    1 MAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPTLPYQQMPVLEVDGAVIPQSLAILRYVGKIGNLYPTDPIQAAFADSATDAVSDIQGYMRGIIFEKDADKKAQLRKDLVETLLPTWLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEERPKK 206          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 365 bits (938), Expect = 2.050e-122
Identity = 185/207 (89.37%), Postives = 193/207 (93.24%), Query Frame = 1
Query:  154 MAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTF-EGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEERPKK 771
            MAPMKLTYF+ AALGE LRLALAQSGVEWIDNRV  E+WPTLKPTLPYQQMPVLEVDGAVIPQ+FAILRYVGKMG+LYPTDPIQAAFADSATDAV+D+HG+MR I FEKDAD K QL KDLVE LLPPWL NLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTF E VPS +LEEFPLLSSLVQRVMAEPRIVAYMEERPKK
Sbjct:    1 MAPMKLTYFDIAALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPTLPYQQMPVLEVDGAVIPQTFAILRYVGKMGDLYPTDPIQAAFADSATDAVNDMHGHMRAIFFEKDADAKTQLLKDLVEKLLPPWLANLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFDESVPSAILEEFPLLSSLVQRVMAEPRIVAYMEERPKK 207          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 2.370e-94
Identity = 148/156 (94.87%), Postives = 149/156 (95.51%), Query Frame = 1
Query:  304 MPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEERPKK 771
            MPVLEVDGAVIPQS AILRYVGKMGNLYP DPIQAAFADSA DAVSDIHGYMRGIIFEKDAD KAQLRKDLVETLLPPWL N EKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQR+MAEPRIVAYME RPKK
Sbjct:    1 MPVLEVDGAVIPQSVAILRYVGKMGNLYPNDPIQAAFADSAVDAVSDIHGYMRGIIFEKDADAKAQLRKDLVETLLPPWLTNSEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRIMAEPRIVAYMEGRPKK 156          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 2.570e-75
Identity = 117/199 (58.79%), Postives = 152/199 (76.38%), Query Frame = 1
Query:  169 LTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEERP 765
            L+YF+  ALGEPLRLALA SG  W D RV +E++  +KP+LPY Q+P LEV G +IPQS A +RY+GK+G LY  DPI+AAFAD+A +AV D+H ++R  + E+D  KK ++RK + +  LP WLGNLE+ALK AGG YFAG KLSIGDI VVARLNWL  G  +G+P T++++FPLLS+LVQ VM+E +IV Y+E  P
Sbjct:    7 LSYFDIPALGEPLRLALAMSGQAWEDKRVSKEEFMAIKPSLPYNQLPTLEVGGTLIPQSLAQMRYIGKIGGLYSEDPIEAAFADAAMEAVIDMHFHLRPTVHEQDPAKKLEMRKAMTDNYLPTWLGNLERALKAAGGSYFAGGKLSIGDIYVVARLNWLKRGALDGIPDTIVDDFPLLSALVQSVMSEEKIVKYLESGP 205          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 7.270e-67
Identity = 112/206 (54.37%), Postives = 150/206 (72.82%), Query Frame = 1
Query:  154 MAP---MKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEER 762
            MAP   + LTYF+FA   EP+R+ALA +G  W D RV   ++P LKP LP  Q+P+LEV G V+PQS A LRYVGK+  LYP D ++AA AD+A D+V D H  +   + +KD  ++ ++R++LV   LP WLGNLEKAL  AGG YFAG KLSIGDIAVVARL WL +G+ +G+P+++++E+PLLS+L++RV AEP I  Y +ER
Sbjct:    1 MAPTTSLTLTYFDFAGPAEPVRMALAMTGQPWEDKRVSFSEFPALKPGLPNGQLPILEVGGKVLPQSGAQLRYVGKLAGLYPEDALEAALADAAVDSVGDNHMKLAPTVQQKDKVQQMEMRQNLVRDFLPTWLGNLEKALANAGGTYFAGGKLSIGDIAVVARLVWLKEGSLDGIPTSIVDEYPLLSALIERVNAEPNIAKYHQER 206          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 4.820e-48
Identity = 91/207 (43.96%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  154 MAP-MKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEE-FPLLSSLVQRVMAEPRIVAYMEERPK 768
            MAP + LTYF+     EP+R AL QSG EW D R+  E++  +KP+LP  Q+PVLEVDG  +PQS  ILRYVGK+G L+P+D ++AA  D+  DA  D +  +R    EKD  K+ ++  DL    +P WL N+EK L    G YFA +K+S+ DI +  RL  L DG + GVP+T+ +  +P L++L   ++ EP+I A++ +  K
Sbjct:    1 MAPKLVLTYFDIPGAAEPIRWALEQSGQEWEDKRLTGEEFGVVKPSLPNGQLPVLEVDGYTLPQSMTILRYVGKLGGLHPSDDLEAAKCDAVLDAAVDFYINVRPAYTEKDQAKQLEMFGDLAVNYIPKWLANVEKQLAATEGIYFA-EKMSVADIMITTRLKTLRDGNYNGVPTTIFDSSYPNLNALYDSIVGEPKIAAFIAKHDK 206          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.800e-47
Identity = 85/206 (41.26%), Postives = 131/206 (63.59%), Query Frame = 1
Query:  154 MAP-MKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEERPK 768
            MAP + L YF+ A   EP+R AL +  +EW D R+ RE++  LKP+LP  Q+PVL +DG  + QS AILRYVGK+G L P+D + AA  D+  D V+D+H  +R    EKD  KK ++R DL    +P WL N+EK L    G +F  DK+++ DI +  RL+ + +G  +G+P+T+ + +P L ++   V++EP++ A++ +  K
Sbjct:    1 MAPKLILKYFDKAGAAEPIRWALEKGSLEWEDKRLTREEFGALKPSLPNGQVPVLSIDGFELAQSMAILRYVGKLGGLNPSDDLAAAKCDAIMDCVTDLHINIRPSFMEKDEAKKMEMRADLAANFIPKWLSNMEKQLSSTDGTFFF-DKMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFLAKHAK 205          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: D7FPV3_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV3_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.850e-44
Identity = 82/206 (39.81%), Postives = 124/206 (60.19%), Query Frame = 1
Query:  154 MAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEERPKK 771
            M+ + LTYF+     E +RLA    G+ + D RV R+++  +K  LP+ Q+P+L VD  V PQS AILRY GK+G LYP+DPI AA  D+  D + DI   +R  I+E +A +K  +RK+L E  LP WL  LE+ L+ AG  +F G++++I D+ +  R+ WL  G   G+P T+L  F  + +  + V + P++  Y +  P K
Sbjct:    1 MSSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYKNGPGK 206          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: F2U7D3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7D3_SALR5)

HSP 1 Score: 156 bits (394), Expect = 1.470e-39
Identity = 80/210 (38.10%), Postives = 121/210 (57.62%), Query Frame = 1
Query:  142 SDISMAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEERPKK 771
            +D S    +L YF+     EP RLA   +GVE+ D RV R++W  LKP  PY Q+P+L+VDG +I QS AI+R+VGK  NLYP D ++AA  D     + DI+  +   I E+D ++K  +R++L   LLP WL  L    K + G     D++SI D+     + WLT G  +G+P T++++   L +L  R+  +P + AY ++   K
Sbjct:   23 TDGSKPKYRLVYFDIRGRAEPARLAFHLAGVEFADVRVSRDQWCKLKPKCPYGQLPILQVDGQIIAQSSAIIRFVGKKTNLYPEDHMEAARVDEVIGLIEDINWLIIPTIKERDMERKLAMRRELATDLLPRWLAVLN--CKFSNGYVLGPDRISIADLTAFTLIGWLTMGVMDGIPKTIVDKHANLKALQARIAKQPNLQAYFDKHYSK 230          
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Match: A0A662XCE6_9STRA (Uncharacterized protein n=3 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCE6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.290e-37
Identity = 86/205 (41.95%), Postives = 118/205 (57.56%), Query Frame = 1
Query:  163 MKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQMPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHGYMRGIIFE-KDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKLSIGDI----AVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYMEER 762
            +KLTYF+     E  RL     G+ ++D RVP   +PTLKPTLP  Q+PVLEVDG V  QS AI RY  K+  L P+DP++A  AD  +  +SD+ G    I+F+ KD  +KA+  K  VE  +P   G LEK   L  GK+  GDKLS  D+     V  +L W       G+P+  +  FP L+++V  V AEP+I AY+ ++
Sbjct:    6 VKLTYFDGKGRAELARLLFTYGGLPFVDERVPHADFPTLKPTLPLGQLPVLEVDGTVYAQSTAIARYAAKLAGLCPSDPVEALKADMFSCTLSDLEGPFVDIMFKTKDETEKAEKIKTFVEETVPKSFGALEK---LVQGKFILGDKLSFADLQFFDVVENKLKW-------GIPTFSMGAFPKLAAVVANVKAEPKIAAYLSKQ 200          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig675.17666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHF0_ECTSI1.630e-13194.66Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LK37_ECTSI2.050e-12289.37Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JAZ7_9PHAE2.370e-9494.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B1N8E6_9PHAE2.570e-7558.79Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
B1N8E7_9PHAE7.270e-6754.37Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
B1N8E8_9PHAE4.820e-4843.96Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
A0A6H5KRV2_9PHAE1.800e-4741.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPV3_ECTSI6.850e-4439.81Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
F2U7D3_SALR51.470e-3938.10Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A662XCE6_9STRA8.290e-3741.95Uncharacterized protein n=3 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig675contigEcto-sp13_S_contig675:4476..8856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Stop1
Start1
Seed ortholog score159.1
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog946362.XP_004994854.1
Model size1515
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K04097
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko01100,ko05204,map00480,map00590,map00980,map00982,map01100,map05204
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Glutathione S-transferase, C-terminal domain
EggNOG OGs3A52M@33154,KOG1695@1,KOG1695@2759
Ec32 ortholog descriptionGlutathione S-transferase
Ec32 orthologEc-13_000340.1
EC2.5.1.18,5.3.99.2
Cds size621
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig675.17666.1prot_Ecto-sp13_S_contig675.17666.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig675 5237..8703 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.9026494-UTR-Ecto-sp13_S_contig675:4475..47221681463927.9026494-UTR-Ecto-sp13_S_contig675:4475..4722Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig675 4476..4722 -
1681463927.9257967-UTR-Ecto-sp13_S_contig675:4742..52361681463927.9257967-UTR-Ecto-sp13_S_contig675:4742..5236Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig675 4743..5236 -
1681463928.0292704-UTR-Ecto-sp13_S_contig675:8703..88561681463928.0292704-UTR-Ecto-sp13_S_contig675:8703..8856Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig675 8704..8856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.9435658-CDS-Ecto-sp13_S_contig675:5236..54101681463927.9435658-CDS-Ecto-sp13_S_contig675:5236..5410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig675 5237..5410 -
1681463927.9655595-CDS-Ecto-sp13_S_contig675:5808..58721681463927.9655595-CDS-Ecto-sp13_S_contig675:5808..5872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig675 5809..5872 -
1681463927.9858158-CDS-Ecto-sp13_S_contig675:6255..62961681463927.9858158-CDS-Ecto-sp13_S_contig675:6255..6296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig675 6256..6296 -
1681463927.9967086-CDS-Ecto-sp13_S_contig675:7093..73021681463927.9967086-CDS-Ecto-sp13_S_contig675:7093..7302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig675 7094..7302 -
1681463928.0074785-CDS-Ecto-sp13_S_contig675:8163..82631681463928.0074785-CDS-Ecto-sp13_S_contig675:8163..8263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig675 8164..8263 -
1681463928.018817-CDS-Ecto-sp13_S_contig675:8670..87031681463928.018817-CDS-Ecto-sp13_S_contig675:8670..8703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig675 8671..8703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig675.17666.1

>prot_Ecto-sp13_S_contig675.17666.1 ID=prot_Ecto-sp13_S_contig675.17666.1|Name=mRNA_Ecto-sp13_S_contig675.17666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
MAPMKLTYFEFAALGEPLRLALAQSGVEWIDNRVPREKWPTLKPTLPYQQ
MPVLEVDGAVIPQSFAILRYVGKMGNLYPTDPIQAAFADSATDAVSDIHG
YMRGIIFEKDADKKAQLRKDLVETLLPPWLGNLEKALKLAGGKYFAGDKL
SIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRVMAEPRIVAYM
EERPKK*
back to top

mRNA from alignment at Ecto-sp13_S_contig675:4476..8856-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig675.17666.1 ID=mRNA_Ecto-sp13_S_contig675.17666.1|Name=mRNA_Ecto-sp13_S_contig675.17666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig675:4476..8856- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAACCTCGGAATTTGGGTCGAACGTATCTCCCGCTGAATCCTCCTA TCTCCCGCTTTGTGACACACGCACAGGTCCTCCTCGACATTACAACCCAA ACCAACCAGGCAAAGCAGCTCCAGCGATTCAACACGTCAACTCTGACATC AGCATGGCACCGATGAAGTTGACATACTTTGAATTTGTGAGTGTACATGT AGCGGTTGGGTTACGGCCTGTGATACGTCGAGTGATACATAGTCCGGCGC TGAGCGCGCGTGTGTCCCATCATGTTCCAGAATAGGTTGTGCGTGTGGTT CTACTTTGAAGGCCTCACGCGTCATCAGACTGCTCATCCAGCTCTGACAA CTTCCCTCGTACCCCGGCTTGGTGGTCGTCACGCTGCTGCAGTGCTGGCC CGCTCATCACAAACATGCTCACAAATCGAGTTTTAGTCAACACACGCATC ACCGTCAAATTTTAGAATTTTTTGCTGCCTTTTTAGTCTTCGGCACCGCA GAGCTCGCATGCCACAGGAACAAAAGTTTGACCCAAATTTTCAAGTGATG TATCCAACGCCCATTAAAAATCTGTTGCCCGTGTGCCTCGCAGGCCGCCC TGGGCGAACCACTGAGACTAGCGCTGGCACAAAGCGGGGTTGAATGGATC GACAACAGGGTGCCGAGGGAGAAGTGGCCCACTCTCAAGCCTAGTGAGTC TGCTGAGGTAGTGCTGTTCTTTCTACTTTTTGTCGCTGCTGGAGCTCTGT CCTTGATTTCGGCTCCCGGGACGATGTTACATGTAGCTATCGATCCGGAG ATCGGCCGAGATCCGTCCTCGTCAAGCGCCAAACGGCCCGTCTCTCAAAT GTTGTTTTTTGCAGCTCCAGTCTCTTCTCTTGCGGCCTGGAATACCAGCC AAAGCAACACGCACCACATGACGGTGTTGAGAGGTAGCTCTTCATGGAGC CAGATCTCAACAGATGTTATCTGGACCGCGGAAGCGCCGGGTTAAATACA TCGCCGACGGTTTTGCAGTAGACTACCGAAGCCGCAGCAGTTTTTTTTTC GTCTTCAGCTGTCTTTACTTCAAATCAACCCTCAGAGCGCTAGTCTACTG CTGTAGTGCCGTTTACGCCAGCCTGTGGTAACACCGAAGGTTTTCCCCGT ACCCACCCCTCCTGCGGTACTCTGCATTCGATTTGCAATGCGAGAAGAGT GCGGCACTCTCTTCCCTCTGTGTACACGCGAAATGTATGTTGTATATGTA ACGCTCTCCACCCACCACAGGCCAGAACCGGAAGCGAGAGAAAAACTCAC TTTGCACGGATCTCGCTTACGCCGGGATTCGAACCTCTGACACTTACGAG GATACCACCTAGACTACCAGGGCAAACAGTATGCATGTTTTGTCCAAGAC TGGATGAGTTTTCGGATTATCCTTTTCTTACCAAACGTCCAACGCTCAGA ACAATTATGGACATGCTGTTTCTCACGAATGAAGTTACTTTCGCACCATT TGTACTTAGTACACGTGTCTCGCCTGCCGCGTGCTACTTTTCTGCCGTGC TCAGCTCTGCCGTATCAACAGATGCCCGTGTTGGAGGTAGATGGAGCGGT CATCCCTCAGAGTTTCGCAATTCTCCGCTACGTCGGGAAGATGGGGAACT TGTACCCCACCGACCCCATCCAAGCCGCTTTCGCAGACAGTGCAACTGAC GCTGTCAGCGACATCCATGGCTACATGAGAGGCATCATTTTCGAGAAGGA CGCGGACAAGAAGGTACGGCAGGCAGTATAGACTAGTGGAACAGGTTTCC ATGCCCCCCCCCCCCCCCCCCACTTTTCTTTGCGTTACAATCTTTCTTTT CTGTCGCTCTTTGTTTTTTCCCGGTTCGANNNNNNNNNNAACTAAGGAAC ATTTTTGAGAAAGGCGGCGAAAAAAAAGGTACGGCGGGAAGATAAAACAG GGGGAAAAGTTTTCCTTCCCCCCCCCCCCCCCCAAGTTGTCGTCGCTCTC AAGCTTCTCCTTGGCAGTCCGTGTGATGTGCTCCGGGTATGAACAAGCCC TCCTGCCCCCCGCAAACCCCCGACCTGCCTTGCTTCTGCACGACCCTAAG TTCTTTACTTGACGAGGCACCAGCAAATCGTATCACTGGAGGGAACGGAT TACGAAATATGTAGATTCCGAACCTTGGAGATTCCAAAGTTGTTCGTTCA TGTATTCCTTTGGCGCCCGCTGTTGCTGTCCTGATGGAGGAGAGAGTTCC TGCTGCCAAACACTCCACGAGGTATATGTAGTGTTGTCTTTATCATCGGT GACAATGCGGTTGCCATGTACCACCGTGCGTTTTCAGTGGACACGTGACT TGATCCGTTTGGCACAGGCTTGAACGCCGTCGAAGCAGCACGCGTTGAAT TTCCCATGTGGCTAAAGCTGTCTTTCGGTCGACCCGTTCAGCCATCCATG TTGTTCCTCAGCGAGTTTTGATGCCATGACGCATCTATCAACACTTTCGT CTCTACCTCTCTCTCCTCCTTTGTCTTTGCTCGCGCCGACGTCTCCTGCC CTGATCGCAGGCACAACTGCGCAAAGACCTGGTAGAGACCCTTCTCCCAC CGTGAGTGCCACCTCAACGTTGGCCTTTGCTCCCCCCCGCCTTCATTTGG TGTAATCAAACTCGTACTGGGAGGATCTGTGTGCATTTATTTGCGATCTG GGTGCTCAACAACCGTGCTGGGCTACATGCATACCATATGCGATAACGAA ACGTTGAACCGTGGCGAGATGGGAAGTCGCTAATGCTTGCCTCACCACCG TGCTTACAAACGAGGTGTTCACACATGTAGAGCGTGAGGACGGTGGTATG AGAACCAGCGAGTGACCATGCGCTTGATGCACAGCTTGAAACGAGGCAAC GTTGTCCTCATACTCACACACACACACACACCCGTCCCCTCCTCGTCTAC CTCCACCCACATTTGCATGTAACGTTTTTCGCAGGTGGCTGGGTAATTTG GAGAAGGCGTTGAAGCTGGCTGGCGGCAAGTACTTCGCCGGCGACAAGGT AAGAAGATGACGAACATTGTAGCACACTCTTCAGTCTTGTTAATGTTGCT TTCGCCACGCGTACCACCCCTCACCCGCTCTTTCGCTCGTGCATCACATT GCCCGCATCATCACAATGGGTGGGTACATAAGGAAGCATCTCGTATCCGA TACTGGTGTGGCACAAGAGTTAGATACTTGCTGATGTAATTAGAAATGTT TTGGTAGCCGACAAGCACGTACGTGCCATTTTCACCCTACTCGCCGAACT CCTTCCCACCCTGAAACAAGTTTTTTTTCCTCTCGCCCCGTTACTCGGAG GCGGTAGCCTAGTTGCGCTGCGGCCTTTGTGACCGGTTCATTTCTCACGT TCTTTCCGTGGTCTCGACGACATTACCTCTTGCTTCCTTGTCGCAGCTCT CCATCGGCGACATCGCGGTTGTCGCACGGCTGAACTGGCTCACGGACGGT ACCTTCGAGGGCGTCCCCTCGACCCTCTTGGAAGAGTTCCCCCTCCTGTC CTCGCTCGTGCAGAGGGTCATGGCCGAGCCGAGGATCGTGGCGTACATGG AGGAGCGACCCAAGAAGTAGATGACAGAGATTGATCGGTGGTAGTTAGTT GCCTTGAACGCGTGTTGAGCGAGCGTGCTACCGCGGAAAATTCTGTGCTG TAGGTACGCAGGAATTGTACTATCGGTAGGCGGAAGTTGTTGTAGACGAC CGGCAGGAAGGTTTTCAAAGGCAACAGTAGCAGGTGGTCGACATGGGAAT GTCTTTTGGGGTTCCTGTGTATAGGGGTGTGTCCTTCGTGTTTGTTTCTT GTGCTATTTTCTGCCACCCATGAATGGACCGATGATGATCGGCGTCTGGT GCAGACTTCATCTCATGTTACAGGCCAAGATTGAGTTGTCAGCGAGTAGG TGGTGTGTAAGGCTTGGACGGTAGAAAAGCATTGGTTTGAGTGTTCATTT TTTTTCCCTTCTCTTGAATTCTTTCAGTGAGGAACACACACATTCTGTGT CGTTCAAGGACTAGAATGCTACAACAATAGAACAGCGTTTTCAGTGTTCC GTGTCTTTCTGTCTGTTCAACTCTTCTTCGCGAGTGAGGAACAAACACAA TCTGTGTCGTTCGGCTTGCACTCTTTTGAGCTCTTCCTTCAATCAAGTGT CATGGTAGTGGGCAGGGTGCTTCCTTTGCAGTTGGCGGCCCTCGTGGCCT TAGCGGCCAAGCAGTCATTGCATGACGCGTAGTCTTGCATGACTGCATTT ATAGACTGGTCTGTCCAATAGTACAGGTTCCCTCAGCTTTGAATTGAAGA GTGCGGGGACGGGGCTAGAATTATGATCCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig675:4476..8856-

>mRNA_Ecto-sp13_S_contig675.17666.1 ID=mRNA_Ecto-sp13_S_contig675.17666.1|Name=mRNA_Ecto-sp13_S_contig675.17666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig675:4476..8856- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCGATGAAGTTGACATACTTTGAATTTGCCGCCCTGGGCGAACC
ACTGAGACTAGCGCTGGCACAAAGCGGGGTTGAATGGATCGACAACAGGG
TGCCGAGGGAGAAGTGGCCCACTCTCAAGCCTACTCTGCCGTATCAACAG
ATGCCCGTGTTGGAGGTAGATGGAGCGGTCATCCCTCAGAGTTTCGCAAT
TCTCCGCTACGTCGGGAAGATGGGGAACTTGTACCCCACCGACCCCATCC
AAGCCGCTTTCGCAGACAGTGCAACTGACGCTGTCAGCGACATCCATGGC
TACATGAGAGGCATCATTTTCGAGAAGGACGCGGACAAGAAGGCACAACT
GCGCAAAGACCTGGTAGAGACCCTTCTCCCACCGTGGCTGGGTAATTTGG
AGAAGGCGTTGAAGCTGGCTGGCGGCAAGTACTTCGCCGGCGACAAGCTC
TCCATCGGCGACATCGCGGTTGTCGCACGGCTGAACTGGCTCACGGACGG
TACCTTCGAGGGCGTCCCCTCGACCCTCTTGGAAGAGTTCCCCCTCCTGT
CCTCGCTCGTGCAGAGGGTCATGGCCGAGCCGAGGATCGTGGCGTACATG
GAGGAGCGACCCAAGAAGTAG
back to top