mRNA_Ecto-sp13_S_contig6747.17663.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6747.17663.1
Unique NamemRNA_Ecto-sp13_S_contig6747.17663.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6747.17663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6747contigEcto-sp13_S_contig6747:995..1596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size591
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.6430976-UTR-Ecto-sp13_S_contig6747:994..10411681463927.6430976-UTR-Ecto-sp13_S_contig6747:994..1041Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6747 995..1041 -
1681463927.6542406-UTR-Ecto-sp13_S_contig6747:1053..12781681463927.6542406-UTR-Ecto-sp13_S_contig6747:1053..1278Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6747 1054..1278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.6661985-CDS-Ecto-sp13_S_contig6747:1278..15961681463927.6661985-CDS-Ecto-sp13_S_contig6747:1278..1596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6747 1279..1596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6747.17663.1prot_Ecto-sp13_S_contig6747.17663.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6747 1279..1596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6747.17663.1

>prot_Ecto-sp13_S_contig6747.17663.1 ID=prot_Ecto-sp13_S_contig6747.17663.1|Name=mRNA_Ecto-sp13_S_contig6747.17663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
SSSPALQHQHLHQQVCTPPAGTTPAPSLADTAQWEVYQGVTTVLAGLLLP
PGRRVAASANGSTASKGGSPDGATTVLGAAARVDARQHRRARRTPPPWQR
APNSS*
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mRNA from alignment at Ecto-sp13_S_contig6747:995..1596-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6747.17663.1 ID=mRNA_Ecto-sp13_S_contig6747.17663.1|Name=mRNA_Ecto-sp13_S_contig6747.17663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6747:995..1596- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGCTCTCCAGCTCTCCAGCACCAGCACCTCCACCAACAGGTGTGCAC
CCCCCCCGCCGGCACCACCCCCGCCCCCTCTCTCGCCGACACTGCGCAGT
GGGAAGTCTACCAAGGGGTTACGACGGTGCTGGCAGGATTGCTCCTTCCT
CCCGGCCGCAGGGTTGCGGCCAGCGCAAATGGTTCAACAGCAAGCAAAGG
CGGTTCTCCAGATGGTGCAACCACCGTGCTTGGCGCTGCCGCAAGGGTGG
ACGCACGGCAGCATAGACGTGCCCGTCGTACTCCTCCTCCATGGCAGCGA
GCCCCGAACAGCTCATGAAACCAACGTTTTGTACAGAGGTTACACAAACA
TGGGATGGGAACCAACAGAAAGAGTCACCGAGGATAGCACAGCAGCAACA
GTATCAAACAGAGAGGCGTACACTCAGTAGTACCGAGCGAAAAAGTCGTG
GCAGACGACGGTTCCGCTACTGCTGCTGTACATGTAGGCCACCGCACATG
TAGTCTATGCATGTTGTATGGATACATGTACACATACATACATGTCTACT
GGTAGTGCTATCTTCAAGTAGACCAAGGCCTGACTACACATGTACACTAC
AT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6747:995..1596-

>mRNA_Ecto-sp13_S_contig6747.17663.1 ID=mRNA_Ecto-sp13_S_contig6747.17663.1|Name=mRNA_Ecto-sp13_S_contig6747.17663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6747:995..1596- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGCTCTCCAGCTCTCCAGCACCAGCACCTCCACCAACAGGTGTGCAC
CCCCCCCGCCGGCACCACCCCCGCCCCCTCTCTCGCCGACACTGCGCAGT
GGGAAGTCTACCAAGGGGTTACGACGGTGCTGGCAGGATTGCTCCTTCCT
CCCGGCCGCAGGGTTGCGGCCAGCGCAAATGGTTCAACAGCAAGCAAAGG
CGGTTCTCCAGATGGTGCAACCACCGTGCTTGGCGCTGCCGCAAGGGTGG
ACGCACGGCAGCATAGACGTGCCCGTCGTACTCCTCCTCCATGGCAGCGA
GCCCCGAACAGCTCATGA
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