prot_Ecto-sp13_S_contig67459.17660.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig67459.17660.1
Unique Name	prot_Ecto-sp13_S_contig67459.17660.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	61

Homology

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BLAST of mRNA_Ecto-sp13_S_contig67459.17660.1 vs. uniprot
Match: A0A6H5KY80_9PHAE (UBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY80_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.640e-22
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0

Query:   13 RLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFMVAGMV 61
            RLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTF+VAGM+
Sbjct:  115 RLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFVVAGML 163

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BLAST of mRNA_Ecto-sp13_S_contig67459.17660.1 vs. uniprot
Match: A0A7R9W1Q9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W1Q9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 9.220e-6
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 0

Query:   12 GRLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFMVA 58
             R  PGP PL+ AL+ +Y+   P   PR+F +LG DFS+KA T+  A
Sbjct:   57 ARYEPGPYPLLGALLFLYHRYTPRLYPRFFSILGFDFSEKALTYFFA 103

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig67459.17660.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig67459.17660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KY80_9PHAE	1.640e-22	95.92	UBA domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7R9W1Q9_9STRA	9.220e-6	46.81	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 14..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..13
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..61
None	No IPR available	TMHMM	TMhelix		coord: 10..32

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig67459	contig	Ecto-sp13_S_contig67459:13..195 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig67459.17660.1	mRNA_Ecto-sp13_S_contig67459.17660.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig67459 13..195 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig67459.17660.1 ID=prot_Ecto-sp13_S_contig67459.17660.1|Name=mRNA_Ecto-sp13_S_contig67459.17660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
LFLVPTSRGVVGRLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSD
KAFTFMVAGMV