mRNA_Ecto-sp13_S_contig67459.17660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67459.17660.1
Unique NamemRNA_Ecto-sp13_S_contig67459.17660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67459.17660.1 vs. uniprot
Match: A0A6H5KY80_9PHAE (UBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY80_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.640e-22
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:   37 RLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFMVAGMV 183
            RLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTF+VAGM+
Sbjct:  115 RLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFVVAGML 163
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BLAST of mRNA_Ecto-sp13_S_contig67459.17660.1 vs. uniprot
Match: A0A7R9W1Q9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W1Q9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 9.220e-6
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   34 GRLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSDKAFTFMVA 174
             R  PGP PL+ AL+ +Y+   P   PR+F +LG DFS+KA T+  A
Sbjct:   57 ARYEPGPYPLLGALLFLYHRYTPRLYPRFFSILGFDFSEKALTYFFA 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67459.17660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY80_9PHAE1.640e-2295.92UBA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9W1Q9_9STRA9.220e-646.81Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67459contigEcto-sp13_S_contig67459:13..195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.3
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog2880.D7FMP5
Preferred nameUBAC2
Model size183
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010559,GO:0010604,GO:0010605,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030162,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0032933,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034613,GO:0035103,GO:0042176,GO:0042177,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044695,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051716,GO:0060049,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070972,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0098588,GO:0098791,GO:0098796,GO:1900037,GO:1900039,GO:1901564,GO:1901799,GO:1902494,GO:1902680,GO:1903018,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897,GO:1990234,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.Ubiquitin-associated domain-containing protein
EggNOG OGsKOG4463@1,KOG4463@2759
Ec32 ortholog descriptionUbiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
Ec32 orthologEc-23_001100.1
EC3.4.22.15
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.4552267-CDS-Ecto-sp13_S_contig67459:12..1951681463927.4552267-CDS-Ecto-sp13_S_contig67459:12..195Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67459 13..195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67459.17660.1prot_Ecto-sp13_S_contig67459.17660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67459 13..195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67459.17660.1

>prot_Ecto-sp13_S_contig67459.17660.1 ID=prot_Ecto-sp13_S_contig67459.17660.1|Name=mRNA_Ecto-sp13_S_contig67459.17660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
LFLVPTSRGVVGRLTPGPIPLVFALVVVYYAIVPPSKPRYFGVLGLDFSD
KAFTFMVAGMV
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mRNA from alignment at Ecto-sp13_S_contig67459:13..195+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67459.17660.1 ID=mRNA_Ecto-sp13_S_contig67459.17660.1|Name=mRNA_Ecto-sp13_S_contig67459.17660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67459:13..195+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTCCTGGTACCAACATCGCGCGGCGTCGTCGGCAGACTAACCCCCGG
GCCCATCCCACTGGTGTTCGCGTTGGTGGTGGTGTACTACGCCATCGTGC
CCCCGTCTAAGCCGCGGTATTTCGGGGTCCTGGGTCTGGACTTCTCGGAT
AAGGCATTTACGTTTATGGTGGCGGGGATGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67459:13..195+

>mRNA_Ecto-sp13_S_contig67459.17660.1 ID=mRNA_Ecto-sp13_S_contig67459.17660.1|Name=mRNA_Ecto-sp13_S_contig67459.17660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67459:13..195+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTCCTGGTACCAACATCGCGCGGCGTCGTCGGCAGACTAACCCCCGG
GCCCATCCCACTGGTGTTCGCGTTGGTGGTGGTGTACTACGCCATCGTGC
CCCCGTCTAAGCCGCGGTATTTCGGGGTCCTGGGTCTGGACTTCTCGGAT
AAGGCATTTACGTTTATGGTGGCGGGGATGGTG
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