mRNA_Ecto-sp13_S_contig6744.17657.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6744.17657.1
Unique NamemRNA_Ecto-sp13_S_contig6744.17657.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6744.17657.1 vs. uniprot
Match: D7FMA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA1_ECTSI)

HSP 1 Score: 437 bits (1124), Expect = 1.150e-136
Identity = 272/332 (81.93%), Postives = 277/332 (83.43%), Query Frame = 1 
Query:   16 AHRYPNSTTAPVATAPVAGAPAPRLGSSVAREAHAQSASSLTQTRAKETGMSFGSGFTSWGTSRADDDXXXXXXXXXXXXXDRNGDAAVLKQELTWGQFITQRIEDPASPTKNNARGGPAPPRKPPAGFDXXXXXXXXXXXXIMSTFGPVSIRTGREDILFGPQDEEPLPMFDRIIGKARDAASGRPDGKGDGARNSTGGGGAVGGA--RDTTASRGRIXAGASGIGXXXXXXXXXXXXXXTPGFHHKKPTAPPPAYSSLPRPREAPLAAPLGGGAERGXXXRSAQPARGGVPGRGTRRGESAPRLSEDLQSGGRRALSGAPSLQPRKEETR 1005
            AHRY NST APVATAP A APAPRLG S AREA +QSASSLTQ RAKETGMSFGS FTSWGTSRADDD             DRNGDAAVLKQELTWGQFITQR E+PASPTKNN RGGPAPPRKPPAGF+ XXXXXXXX   IMSTFGPVSIRTGREDILFGPQDEEPLPMFDRIIGKARDA SGRPDGKGDGARNSTG            + ASR R  AGA GIG   XXXXXXXXXXX  GFHHKKPT PPPAYS+LPRPREAPLAAPLGGGAERGXXXRSAQPARGGVPGRGTRRGESAPRL ED QSGGRRALSGAPSLQPRK ETR
Sbjct:  259 AHRYSNSTAAPVATAPGAVAPAPRLGGSGAREARSQSASSLTQARAKETGMSFGSRFTSWGTSRADDDRSDEGSAESSAGSDRNGDAAVLKQELTWGQFITQRFEEPASPTKNNTRGGPAPPRKPPAGFNGXXXXXXXXIDDIMSTFGPVSIRTGREDILFGPQDEEPLPMFDRIIGKARDATSGRPDGKGDGARNSTGXXXXXXXXXRNSSIASRARSGAGAGGIGGKTXXXXXXXXXXXAQGFHHKKPTVPPPAYSTLPRPREAPLAAPLGGGAERGXXXRSAQPARGGVPGRGTRRGESAPRLLEDSQSGGRRALSGAPSLQPRKGETR 590
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BLAST of mRNA_Ecto-sp13_S_contig6744.17657.1 vs. uniprot
Match: A0A6H5KT18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT18_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 2.360e-101
Identity = 250/401 (62.34%), Postives = 259/401 (64.59%), Query Frame = 1 
Query:    1 MRPAAAHRYPNSTTAPVATAPVAGAPAPRLGSSVAREAHAQSASSLTQTRAKETGMSFGSGFTSWGTSRADDDXXXXXXXXXXXXXDRNGDAAVLKQELTWGQFITQRIEDPASPTKNNARGGPAPPRKPPAGFDXXXXXXXXXXXXIMSTFGPVSIRTGREDILFGPQDEEPLPMFDRIIGKARDAASGRPDGKGDGARNSTGGGGAVGGARDTTASRGRIXAGASGIGXXXXXXXXXXXXXXTPGFHHKKPTAPPPAYSSLPR------------------------------------------------------------------PREAPLAAPLGGGAERGXXXRSAQPARGGVPGRGTRRGESAPRLSEDLQSGGRRALSGAPSLQPRKEETR 1005
            MR AAAHRY NST APVA+AP AGA AP+LGSS AREA +QSASS TQ RAKETGMSFGSGFTSW TSRADDD XXXXXXXXXXX DRNGDAAVLKQ+          I+D                                    IMSTFGPVSIRTGREDILFGPQDEEPLPMFDRIIGKARDAASGRPDGKGDGAR  TGGGG+ GGARD+TASRGR  AGA GIGXXXXXXXXXXXXXX  GFHH+KPTAPPPAYSSLPR                                                                  PREAP  AP GGGAERG   RSAQPARGGV GRGTRRGESAPRL +  QSGGRRALSGAPSLQPRKEETR
Sbjct:  180 MRHAAAHRYSNSTAAPVASAPGAGASAPQLGSSGAREAQSQSASSSTQARAKETGMSFGSGFTSWSTSRADDDRXXXXXXXXXXXSDRNGDAAVLKQD--------NDIDD------------------------------------IMSTFGPVSIRTGREDILFGPQDEEPLPMFDRIIGKARDAASGRPDGKGDGARIITGGGGSGGGARDSTASRGRSGAGAGGIGXXXXXXXXXXXXXXVSGFHHRKPTAPPPAYSSLPRXIIXXXXXXXXXARDSTASRGRSGAGAGXIXXXXXXXXXXXXXXXXSGFHHRKPTAPPPAYSSLPRPREAPQEAPSGGGAERGGGGRSAQPARGGVSGRGTRRGESAPRLMDHSQSGGRRALSGAPSLQPRKEETR 536
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6744.17657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA1_ECTSI1.150e-13681.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT18_9PHAE2.360e-10162.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6744contigEcto-sp13_S_contig6744:5070..7521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1005
Hectar predicted targeting categoryother localisation
Exons3
Cds size1005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.296934-CDS-Ecto-sp13_S_contig6744:5069..53601681463927.296934-CDS-Ecto-sp13_S_contig6744:5069..5360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6744 5070..5360 +
1681463927.3084044-CDS-Ecto-sp13_S_contig6744:5812..59441681463927.3084044-CDS-Ecto-sp13_S_contig6744:5812..5944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6744 5813..5944 +
1681463927.3183112-CDS-Ecto-sp13_S_contig6744:6939..75211681463927.3183112-CDS-Ecto-sp13_S_contig6744:6939..7521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6744 6940..7521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6744.17657.1prot_Ecto-sp13_S_contig6744.17657.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6744 5070..7521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6744.17657.1

>prot_Ecto-sp13_S_contig6744.17657.1 ID=prot_Ecto-sp13_S_contig6744.17657.1|Name=mRNA_Ecto-sp13_S_contig6744.17657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=335bp
MRPAAAHRYPNSTTAPVATAPVAGAPAPRLGSSVAREAHAQSASSLTQTR
AKETGMSFGSGFTSWGTSRADDDRSDQGSAESSAESDRNGDAAVLKQELT
WGQFITQRIEDPASPTKNNARGGPAPPRKPPAGFDGFDDDDDNDIDDIMS
TFGPVSIRTGREDILFGPQDEEPLPMFDRIIGKARDAASGRPDGKGDGAR
NSTGGGGAVGGARDTTASRGRIGAGASGIGGKTTGGIRGRSSAGTPGFHH
KKPTAPPPAYSSLPRPREAPLAAPLGGGAERGGGGRSAQPARGGVPGRGT
RRGESAPRLSEDLQSGGRRALSGAPSLQPRKEETR
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mRNA from alignment at Ecto-sp13_S_contig6744:5070..7521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6744.17657.1 ID=mRNA_Ecto-sp13_S_contig6744.17657.1|Name=mRNA_Ecto-sp13_S_contig6744.17657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6744:5070..7521+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCCCGCTGCCGCGCACCGGTACCCCAACAGCACCACCGCTCCTGT
TGCTACTGCGCCTGTGGCCGGCGCCCCGGCGCCCCGGCTGGGGAGCAGCG
TGGCAAGGGAGGCGCATGCCCAGTCCGCGAGCTCCTTGACTCAGACGCGG
GCGAAGGAGACCGGCATGAGCTTCGGCAGCGGGTTCACCTCGTGGGGTAC
GTCCAGGGCGGACGACGATCGGAGCGACCAGGGCTCCGCCGAGAGCAGTG
CAGAGTCCGACAGGAACGGGGACGCCGCGGTTTTGAAGCAGGTGCGTGTG
TGGTACGCAACACAGAGCAGCAGCAGGAGTAGGAGGAAGCTCTCCTGCTT
TTTTCTTGCTGCTGCTGCTGCTGCTGCTGCGCTGCTGCTACGCATCGGGG
TTGGTAGACTATGTGCGGATTCTCACGTCTACCACTGAACGCGACCTGTT
GTGTTGTTGCTGTTGTCGACACGTTCCTTGACGTCGTTGTTGTCATCGTC
ATGTAGTCGCACCGGGGGCAGTAGGGCCACCCATGTCAACGTTCAAGCGT
TGATAGACGGTGCGTGTGTGGGTCTATGTCAACCATTATTGTCAAAAGAT
GATTTCCGACGTCGGGCCATTCATGAGAATTTGAGAAATGAACGGGTATC
CACCAACCAGCCTTCTGGGCTGTCATAGCAGCGGCGCGCGTGCTCTTGAT
CGAGTATGAAAGGCCGTTGCTCCTTCGTTTGCACCCTCCGAAGGAATTGA
CGTGGGGACAGTTCATCACCCAGCGTATCGAGGACCCGGCCTCTCCAACC
AAAAATAACGCTAGGGGCGGCCCTGCACCTCCTCGAAAGCCGCCGGCGGG
CTTCGATGGCTTCGACGATGATGACGTGAGTAACGTCTTCCCGCGCCCGC
CGTTTGGTGAGGTCGGTGACGAAGACTCGACGTGCGACGAAGTGGTGTTG
CTGTCGTTGTCTATTACGGCACTTGTGTTGTTTTTTGTCGACGTGATGAT
TGTGTGAACGCTCTTCCTCGATCGGTGATCCTGCAAACTTCTGGATGAAA
GGAAGGCGACTCGGCCGCGGTGCGGAAAGTCTTTCGGGCTGTTGCCATTG
AGAGAGTAAGAGCTGCCGCGCGTTCGTCTTTGGTGCTGGTTTGACGTTAT
GCGATCGAACGTGATTGCCTTGTCGATCAGTGGCAACGATCACGACCCTA
AACCAAGGACCTTTAGCAGTGTAGGTCACACCGTCCTTGTCTCGTTTTGA
ACATTTCCGTTCTCTTCTGCTGTTTGGCAACCGCGGCCGGAATGATTCGT
GGTGATGATCATTTCATCTGTAATTTCCACCTCGGTGGAGCTAGCAGTAC
GCGTTCTGTCACGGCTGGGTGGACAGCAGAATTACGTTGTTTCGTGAGCC
AACAGCAACCATGTCATCTACTGAGTGAAGTCTATGTACTGTAGTTGCTG
ACCTTTCTGTGCTGTTATGTCAACTGCACATTTTATGCTTGGCGGAAGCC
AGACGAAGAGGATTCTCATGGTCTTCACCTTTGCTACTGAAATGCCGTGT
CGGCGTTGTTTGCTTGCCGCACCCACTCACCTCTCGCTCGATGCAGTGGT
GCACCCGGTTTATCGACATGCCCCTTTTGAGCGGCATGTCCTGTGTAGCG
ACCACGAAATGTCGTCGCAATGCTGCTGCACCCTGACTGCTCACCGGTAA
TAGCGGTCACAGCAGTCCTGCCTGACAAAAGTCGCTAGATGGTCCCAGTT
GCCTCGGTCTCCCCATTGTTTGGTTTGGAGTGTTTCCGCACGCCCCCCTC
CCCCCCCCTTCAGGCAAATTTACTTGTGTGGCCGGCCACCTGGCTGTCGT
CCCTCCTTATGTTTTTCCAGGACAACGACATAGACGACATTATGTCGACG
TTTGGACCGGTCTCGATCCGGACGGGTCGAGAGGACATACTATTCGGCCC
CCAGGACGAGGAACCGCTGCCCATGTTCGACCGCATCATCGGGAAGGCTC
GCGACGCTGCTTCCGGCAGGCCTGACGGCAAGGGCGACGGGGCTCGTAAC
AGCACCGGCGGGGGCGGGGCGGTCGGGGGGGCTCGCGACACTACCGCAAG
CAGGGGTCGGATTGGGGCGGGCGCGAGCGGCATCGGCGGCAAGACGACCG
GAGGCATCCGAGGAAGGTCGTCGGCGGGGACGCCAGGGTTTCATCACAAG
AAGCCCACCGCGCCGCCACCGGCGTATTCATCGCTGCCCCGGCCGAGGGA
AGCCCCTCTGGCGGCGCCGTTGGGAGGTGGCGCAGAGAGGGGGGGTGGGG
GGAGGTCGGCGCAGCCTGCCCGCGGCGGCGTGCCTGGACGTGGCACGCGT
CGAGGAGAAAGCGCGCCTCGTCTGTCGGAGGACTTGCAATCAGGCGGCCG
ACGAGCCCTCTCGGGGGCACCGTCACTGCAGCCCCGCAAAGAGGAGACCA
GG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6744:5070..7521+

>mRNA_Ecto-sp13_S_contig6744.17657.1 ID=mRNA_Ecto-sp13_S_contig6744.17657.1|Name=mRNA_Ecto-sp13_S_contig6744.17657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6744:5070..7521+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCCCGCTGCCGCGCACCGGTACCCCAACAGCACCACCGCTCCTGT
TGCTACTGCGCCTGTGGCCGGCGCCCCGGCGCCCCGGCTGGGGAGCAGCG
TGGCAAGGGAGGCGCATGCCCAGTCCGCGAGCTCCTTGACTCAGACGCGG
GCGAAGGAGACCGGCATGAGCTTCGGCAGCGGGTTCACCTCGTGGGGTAC
GTCCAGGGCGGACGACGATCGGAGCGACCAGGGCTCCGCCGAGAGCAGTG
CAGAGTCCGACAGGAACGGGGACGCCGCGGTTTTGAAGCAGGAATTGACG
TGGGGACAGTTCATCACCCAGCGTATCGAGGACCCGGCCTCTCCAACCAA
AAATAACGCTAGGGGCGGCCCTGCACCTCCTCGAAAGCCGCCGGCGGGCT
TCGATGGCTTCGACGATGATGACGACAACGACATAGACGACATTATGTCG
ACGTTTGGACCGGTCTCGATCCGGACGGGTCGAGAGGACATACTATTCGG
CCCCCAGGACGAGGAACCGCTGCCCATGTTCGACCGCATCATCGGGAAGG
CTCGCGACGCTGCTTCCGGCAGGCCTGACGGCAAGGGCGACGGGGCTCGT
AACAGCACCGGCGGGGGCGGGGCGGTCGGGGGGGCTCGCGACACTACCGC
AAGCAGGGGTCGGATTGGGGCGGGCGCGAGCGGCATCGGCGGCAAGACGA
CCGGAGGCATCCGAGGAAGGTCGTCGGCGGGGACGCCAGGGTTTCATCAC
AAGAAGCCCACCGCGCCGCCACCGGCGTATTCATCGCTGCCCCGGCCGAG
GGAAGCCCCTCTGGCGGCGCCGTTGGGAGGTGGCGCAGAGAGGGGGGGTG
GGGGGAGGTCGGCGCAGCCTGCCCGCGGCGGCGTGCCTGGACGTGGCACG
CGTCGAGGAGAAAGCGCGCCTCGTCTGTCGGAGGACTTGCAATCAGGCGG
CCGACGAGCCCTCTCGGGGGCACCGTCACTGCAGCCCCGCAAAGAGGAGA
CCAGG
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