mRNA_Ecto-sp13_S_contig67387.17651.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67387.17651.1
Unique NamemRNA_Ecto-sp13_S_contig67387.17651.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: D7FQS6_ECTSI (Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 6.370e-28
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVT   S  Y
Sbjct:  417 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTEKESTEY 474
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: A0A6H5K1Z4_9PHAE (Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.180e-26
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            QGFDKRGFVWYTNFESRKSQE SHNP+GALSFWWSEVQRAVRIEGVMTKVT   S  Y
Sbjct:  418 QGFDKRGFVWYTNFESRKSQETSHNPFGALSFWWSEVQRAVRIEGVMTKVTDQESTEY 475
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: UPI00198C3BFD (Pyridoxal 5'-phosphate synthase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=UPI00198C3BFD)

HSP 1 Score: 78.6 bits (192), Expect = 3.850e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            +GFD+RG VWYTN++SRK QE++ NPY AL F W E++R VRIEGV+ KV+ + S  Y
Sbjct:   76 KGFDERGIVWYTNYDSRKGQELAGNPYAALQFHWVELERTVRIEGVVEKVSAEESDAY 133
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: A0A482SL99_9ARCH (Pyridoxamine 5'-phosphate oxidase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL99_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 5.940e-17
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVT 153
            +GFD+RGFVWYTN+ESRK QE+  NP+ AL+FWW E++R+VRIEG + +V+
Sbjct:  106 KGFDERGFVWYTNYESRKGQELVDNPHAALTFWWGELERSVRIEGKVERVS 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: UPI0019861455 (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=UPI0019861455)

HSP 1 Score: 78.2 bits (191), Expect = 2.410e-16
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            +GFD RG VWYTNF+SRK QE++ NP+ AL F W E++R VRIEG++TKV+ + S  Y
Sbjct:   70 KGFDARGIVWYTNFDSRKGQELAGNPFAALQFHWVELERVVRIEGLVTKVSDEESDAY 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: A0A2N2SZ50_9PROT (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-18 TaxID=2013709 RepID=A0A2N2SZ50_9PROT)

HSP 1 Score: 77.8 bits (190), Expect = 3.440e-16
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            +G+D+RG VWYTN+ESRK QE++ NPY AL F W E++R VRIEGV+ KV+ + S  Y
Sbjct:   66 KGYDERGIVWYTNYESRKGQELAGNPYAALQFHWVELERVVRIEGVVEKVSNEESDDY 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: A0A7S2XW57_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW57_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.540e-16
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            +GFD+RG+VWYTN+ESRK QE+S NP+ +L FWW ++ R+VRIEG + KV+ + S  Y
Sbjct:  138 KGFDERGWVWYTNYESRKGQELSANPWASLVFWWGDLHRSVRIEGKVEKVSAEESDEY 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: A0A257H0J0_9BURK (Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 Tax=Burkholderiales bacterium PBB4 TaxID=2015566 RepID=A0A257H0J0_9BURK)

HSP 1 Score: 75.9 bits (185), Expect = 7.350e-16
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            +G+D +G VWYTN+ESRK QE++ NPY AL F W E++R VRIEGV+ KV+ + S  Y
Sbjct:   66 KGYDAQGIVWYTNYESRKGQELAGNPYAALQFHWVELERVVRIEGVVEKVSNEESDAY 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: A0A7R9YBU3_9STRA (Pyridoxal 5'-phosphate synthase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBU3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.800e-16
Identity = 29/58 (50.00%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            +G+D  GFVWYTN+ SRK+QE+  NP+ AL+FWW +++R+VRIEG + +++ + S  Y
Sbjct:   33 KGYDSEGFVWYTNYGSRKAQELDANPFAALTFWWGDLERSVRIEGRVQRISKEESEAY 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Match: A0A1V6F3A4_9PROT (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Alphaproteobacteria bacterium ADurb.Bin100 TaxID=1852791 RepID=A0A1V6F3A4_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.670e-15
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKVTFDSSIFY 174
            +G+D+RG VWYTN+ES+K QE++ NPY AL F W E++R VRIEG++ KV+ + S  Y
Sbjct:   65 KGYDERGIVWYTNYESQKGQELAGNPYAALQFHWVELERVVRIEGLVEKVSAEDSDAY 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67387.17651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS6_ECTSI6.370e-2891.38Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5K1Z4_9PHAE1.180e-2687.93Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus... [more]
UPI00198C3BFD3.850e-1758.62Pyridoxal 5'-phosphate synthase n=1 Tax=Polaromona... [more]
A0A482SL99_9ARCH5.940e-1762.75Pyridoxamine 5'-phosphate oxidase n=1 Tax=archaeon... [more]
UPI00198614552.410e-1658.62Pyridoxamine 5'-phosphate oxidase n=1 Tax=Ferrugin... [more]
A0A2N2SZ50_9PROT3.440e-1658.62Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 T... [more]
A0A7S2XW57_9STRA3.540e-1656.90Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa... [more]
A0A257H0J0_9BURK7.350e-1656.90Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 T... [more]
A0A7R9YBU3_9STRA7.800e-1650.00Pyridoxal 5'-phosphate synthase (Fragment) n=1 Tax... [more]
A0A1V6F3A4_9PROT1.670e-1555.17Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67387contigEcto-sp13_S_contig67387:202..375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score113.6
Seed ortholog evalue3.1e-23
Seed eggNOG ortholog2880.D7FQS6
Preferred namePNPO
Model size174
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K08821
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,ko05202,map00750,map01100,map01120,map05202
KEGG ModuleM00124
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0010181,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019842,GO:0030170,GO:0031974,GO:0031981,GO:0032553,GO:0034285,GO:0034641,GO:0036094,GO:0042221,GO:0042364,GO:0042802,GO:0042803,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0046983,GO:0048037,GO:0050662,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0070013,GO:0070279,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901700
Exons1
EggNOG free text desc.pyridoxamine-phosphate oxidase activity
EggNOG OGsCOG0259@1,KOG2586@2759
EC1.4.3.5,2.7.11.22
Cds size174
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.852928-CDS-Ecto-sp13_S_contig67387:201..3751681463926.852928-CDS-Ecto-sp13_S_contig67387:201..375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67387 202..375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67387.17651.1prot_Ecto-sp13_S_contig67387.17651.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67387 202..375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67387.17651.1

>prot_Ecto-sp13_S_contig67387.17651.1 ID=prot_Ecto-sp13_S_contig67387.17651.1|Name=mRNA_Ecto-sp13_S_contig67387.17651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
QGFDKRGFVWYTNFESRKSQEMSHNPYGALSFWWSEVQRAVRIEGVMTKV
TFDSSIFY
back to top

mRNA from alignment at Ecto-sp13_S_contig67387:202..375-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67387.17651.1 ID=mRNA_Ecto-sp13_S_contig67387.17651.1|Name=mRNA_Ecto-sp13_S_contig67387.17651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67387:202..375- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTTTCGACAAGAGAGGGTTCGTTTGGTACACCAACTTTGAGAGCCG
CAAGTCTCAGGAGATGTCGCACAACCCTTACGGTGCGTTGTCGTTCTGGT
GGAGCGAGGTTCAGCGCGCTGTACGCATCGAGGGGGTGATGACGAAGGTG
ACTTTTGATTCTTCGATATTTTAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67387:202..375-

>mRNA_Ecto-sp13_S_contig67387.17651.1 ID=mRNA_Ecto-sp13_S_contig67387.17651.1|Name=mRNA_Ecto-sp13_S_contig67387.17651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67387:202..375- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTTTCGACAAGAGAGGGTTCGTTTGGTACACCAACTTTGAGAGCCG
CAAGTCTCAGGAGATGTCGCACAACCCTTACGGTGCGTTGTCGTTCTGGT
GGAGCGAGGTTCAGCGCGCTGTACGCATCGAGGGGGTGATGACGAAGGTG
ACTTTTGATTCTTCGATATTTTAT
back to top