mRNA_Ecto-sp13_S_contig6736.17650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6736.17650.1
Unique NamemRNA_Ecto-sp13_S_contig6736.17650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6736.17650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6736contigEcto-sp13_S_contig6736:3566..4273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.713165-CDS-Ecto-sp13_S_contig6736:3565..36121681463926.713165-CDS-Ecto-sp13_S_contig6736:3565..3612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6736 3566..3612 +
1681463926.7233713-CDS-Ecto-sp13_S_contig6736:4020..42731681463926.7233713-CDS-Ecto-sp13_S_contig6736:4020..4273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6736 4021..4273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6736.17650.1prot_Ecto-sp13_S_contig6736.17650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6736 3566..4273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6736.17650.1

>prot_Ecto-sp13_S_contig6736.17650.1 ID=prot_Ecto-sp13_S_contig6736.17650.1|Name=mRNA_Ecto-sp13_S_contig6736.17650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MGVDATRHKTKKENQSCFPNHKPDNNDNDEDHHINDDSHWRIRNSGGTPA
LCRHRDFLKPNNWMHRFVAKKMADDLFTHNKADLKSELSWLRKNTTTEH*
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mRNA from alignment at Ecto-sp13_S_contig6736:3566..4273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6736.17650.1 ID=mRNA_Ecto-sp13_S_contig6736.17650.1|Name=mRNA_Ecto-sp13_S_contig6736.17650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6736:3566..4273+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTGGACGCCACCAGACATAAGACAAAAAAGGAGAATCAAAGGTG
ACAGAGTAGCAACAAATTCAGCGAAGCACCAGTCGTTCTCGCTTTCGTAC
AGTGCAACAGACGGAACTGGTGGGTTCTCTAATAAATATTATACGAAGCA
CCTTGCGGCAGGGGAACGGAGGGAGATAGAGTGCGTCGAGTGGTGATGCT
GTTGGATGCAGCAGCTCGTTTTTTTTGGGTGGCGGGGGGGTTGGAGGTTG
GAGGGTTGTGTGGCAATTGGGACCACAACATAAACTAGTTTCACCTTCGC
ATGGCGGCGTCGGCTGTGTCCTTCATGTCGGTCTCGTCCTCCTTCGGGCC
CTGGCCGTGCGAGTCGTTGAGCTGCTTGAGCTGCTGGTACTGCTCGTAGG
TCATGTCCTTCCCCTTGAACGACTCCTTCACCTCTTCTTCCTTGCTCACG
CACAGCTGTTTTCCAAACCACAAGCCCGACAACAACGACAACGACGAAGA
CCACCATATCAACGACGACTCTCATTGGCGGATCCGAAACAGCGGAGGAA
CACCCGCTCTTTGCCGACATCGCGACTTCCTCAAGCCGAACAATTGGATG
CACCGATTTGTGGCAAAAAAAATGGCTGATGATTTATTTACTCACAACAA
GGCCGATCTCAAGAGCGAGTTGTCTTGGTTAAGAAAAAATACGACTACGG
AGCACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6736:3566..4273+

>mRNA_Ecto-sp13_S_contig6736.17650.1 ID=mRNA_Ecto-sp13_S_contig6736.17650.1|Name=mRNA_Ecto-sp13_S_contig6736.17650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6736:3566..4273+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTGGACGCCACCAGACATAAGACAAAAAAGGAGAATCAAAGCTG
TTTTCCAAACCACAAGCCCGACAACAACGACAACGACGAAGACCACCATA
TCAACGACGACTCTCATTGGCGGATCCGAAACAGCGGAGGAACACCCGCT
CTTTGCCGACATCGCGACTTCCTCAAGCCGAACAATTGGATGCACCGATT
TGTGGCAAAAAAAATGGCTGATGATTTATTTACTCACAACAAGGCCGATC
TCAAGAGCGAGTTGTCTTGGTTAAGAAAAAATACGACTACGGAGCACTAA
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