mRNA_Ecto-sp13_S_contig67348.17647.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67348.17647.1
Unique NamemRNA_Ecto-sp13_S_contig67348.17647.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: D7FT57_ECTSI (ARL8, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT57_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.570e-35
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:   13 QAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKV 207
            +AALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQ+IRELNLDYVTANPWILIPISALKV
Sbjct:   98 KAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQIIRELNLDYVTANPWILIPISALKV 162
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: A0A7S2C4S7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4S7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.820e-27
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   22 LARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVNGV 216
            LAR+ELHRLLED ELA+TPLLVLANKVDLEPH+SE ++I ELNLDY+  NPWI+IPISALKV  +
Sbjct:  101 LARKELHRLLEDRELATTPLLVLANKVDLEPHISEPELITELNLDYIVDNPWIVIPISALKVTNI 165
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: F0YA37_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA37_AURAN)

HSP 1 Score: 105 bits (263), Expect = 4.020e-27
Identity = 48/62 (77.42%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   22 LARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKV 207
            LAR+ELHRLLED ELA+TPLLV+ANK+DL+PH+SE  +IRELNLDY+T NPWI+IP+SALKV
Sbjct:  101 LARKELHRLLEDRELATTPLLVIANKIDLDPHISEPDLIRELNLDYITENPWIVIPVSALKV 162
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: A0A485LCR6_9STRA (Aste57867_19416 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCR6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.420e-26
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 NPSAQAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKV 207
            N   Q +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+SE ++IRELNLDY+  NPW++IPISAL++
Sbjct:  147 NAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHISEPELIRELNLDYIVDNPWLVIPISALRL 215
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: A0A8J2SSV8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.830e-26
Identity = 48/65 (73.85%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   22 LARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVNGV 216
            LAR+ELHRLLED ELA+TP+LV++NK+DLEPH++E  +IR+LNLDYVT NPWI+IPISALKV  V
Sbjct:  101 LARKELHRLLEDRELATTPVLVVSNKIDLEPHVTEGDLIRDLNLDYVTENPWIVIPISALKVVNV 165
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: F0WPJ3_9STRA (AlNc14C187G8338 protein n=34 Tax=Oomycota TaxID=4762 RepID=F0WPJ3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.420e-25
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 NPSAQAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKV 207
            N   Q +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+ E ++IRELNLDYV  NPW++IP SAL++
Sbjct:  127 NAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHICEPELIRELNLDYVVDNPWLMIPCSALRL 195
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: A0A2D4CIT1_PYTIN (Arf/Sar family, other n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIT1_PYTIN)

HSP 1 Score: 105 bits (263), Expect = 4.370e-25
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 NPSAQAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKV 207
            N   Q +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+SE ++IRELNLDY+  NPW++IPISAL++
Sbjct:   94 NAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHISEPELIRELNLDYIVDNPWLVIPISALRL 162
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: A0A7S2RSV3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSV3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.840e-25
Identity = 43/64 (67.19%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   25 ARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKVNGV 216
            A++ELHRLLED++LA+TP+LVLANK+DL+PH+SE ++IRELNLDY+  NPW++IPISAL+V  +
Sbjct:  102 AKKELHRLLEDQQLATTPILVLANKIDLDPHVSEAELIRELNLDYIVDNPWVVIPISALQVTNI 165
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: A0A0P1AND5_PLAHL (Adp-ribosylation factor family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AND5_PLAHL)

HSP 1 Score: 105 bits (263), Expect = 4.860e-25
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 NPSAQAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALKV 207
            N   Q +LAR+ELHRLLED ELA+TPLLVLANK+DLEPH+SE ++IRELNLDY+  NPW++IPISAL++
Sbjct:   94 NAFDQISLARKELHRLLEDRELATTPLLVLANKIDLEPHISEPELIRELNLDYIVDNPWLVIPISALRL 162
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BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Match: A0A836CK42_9STRA (ARL8, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK42_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.890e-23
Identity = 42/65 (64.62%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   10 AQAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELNLDYVTANPWILIPISALK 204
            A+ A A+RELHRLLED +L+STPLLVLANK+DL+PH+ E  +I+ELN+DY+  +PW++IPISAL+
Sbjct:   98 ARLASAKRELHRLLEDRQLSSTPLLVLANKIDLQPHVGEADLIKELNMDYIMDSPWLIIPISALR 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67348.17647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT57_ECTSI2.570e-3596.92ARL8, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A7S2C4S7_9STRA3.820e-2776.92Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YA37_AURAN4.020e-2777.42Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A485LCR6_9STRA1.420e-2671.01Aste57867_19416 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J2SSV8_9STRA4.830e-2673.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0WPJ3_9STRA1.420e-2569.57AlNc14C187G8338 protein n=34 Tax=Oomycota TaxID=47... [more]
A0A2D4CIT1_PYTIN4.370e-2571.01Arf/Sar family, other n=2 Tax=Pythium insidiosum T... [more]
A0A7S2RSV3_9STRA4.840e-2567.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0P1AND5_PLAHL4.860e-2571.01Adp-ribosylation factor family n=1 Tax=Plasmopara ... [more]
A0A836CK42_9STRA6.890e-2364.62ARL8, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67348contigEcto-sp13_S_contig67348:309..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score127.5
Seed ortholog evalue2.8e-27
Seed eggNOG ortholog2880.D7FT57
Preferred nameARL8B
Model size234
KEGG koko:K01197,ko:K07955,ko:K07977
KEGG ReactionR07824,R07825,R10905
KEGG Pathwayko00531,ko01100,map00531,map01100
KEGG ModuleM00076,M00077
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000306,GO:0000323,GO:0000819,GO:0001666,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005819,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006928,GO:0006950,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0008088,GO:0008092,GO:0008150,GO:0008333,GO:0009628,GO:0009987,GO:0010008,GO:0010970,GO:0012505,GO:0012506,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019898,GO:0022402,GO:0030141,GO:0030496,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031312,GO:0031410,GO:0031902,GO:0031982,GO:0032418,GO:0032419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0035577,GO:0035639,GO:0036094,GO:0036230,GO:0036293,GO:0042119,GO:0042582,GO:0043014,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0046903,GO:0046907,GO:0048487,GO:0048786,GO:0050896,GO:0051179,GO:0051233,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0070482,GO:0070820,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0098813,GO:0098852,GO:0099111,GO:0099503,GO:0101002,GO:0101003,GO:1901265,GO:1901363
Exons1
EggNOG free text desc.Belongs to the small GTPase superfamily. Arf family
EggNOG OGsCOG1100@1,KOG0075@2759
EC3.2.1.35
Cds size234
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko00537,ko01000,ko02042,ko04031,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.5632498-CDS-Ecto-sp13_S_contig67348:308..5421681463926.5632498-CDS-Ecto-sp13_S_contig67348:308..542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67348 309..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67348.17647.1prot_Ecto-sp13_S_contig67348.17647.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67348 309..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67348.17647.1

>prot_Ecto-sp13_S_contig67348.17647.1 ID=prot_Ecto-sp13_S_contig67348.17647.1|Name=mRNA_Ecto-sp13_S_contig67348.17647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
NPSAQAALARRELHRLLEDEELASTPLLVLANKVDLEPHMSEDQVIRELN
LDYVTANPWILIPISALKVNGVAFGGS*
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mRNA from alignment at Ecto-sp13_S_contig67348:309..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67348.17647.1 ID=mRNA_Ecto-sp13_S_contig67348.17647.1|Name=mRNA_Ecto-sp13_S_contig67348.17647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67348:309..542+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCCTCTGCCCAGGCGGCGCTCGCCAGACGAGAACTGCATCGATTACT
GGAGGACGAGGAGCTGGCGTCTACGCCGCTGCTGGTGTTGGCGAATAAGG
TTGATCTGGAGCCGCACATGAGCGAGGACCAGGTCATCCGGGAGTTGAAT
CTCGACTACGTGACCGCAAACCCTTGGATTCTTATCCCGATATCTGCCCT
TAAGGTAAATGGTGTTGCTTTTGGTGGGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67348:309..542+

>mRNA_Ecto-sp13_S_contig67348.17647.1 ID=mRNA_Ecto-sp13_S_contig67348.17647.1|Name=mRNA_Ecto-sp13_S_contig67348.17647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67348:309..542+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCCTCTGCCCAGGCGGCGCTCGCCAGACGAGAACTGCATCGATTACT
GGAGGACGAGGAGCTGGCGTCTACGCCGCTGCTGGTGTTGGCGAATAAGG
TTGATCTGGAGCCGCACATGAGCGAGGACCAGGTCATCCGGGAGTTGAAT
CTCGACTACGTGACCGCAAACCCTTGGATTCTTATCCCGATATCTGCCCT
TAAGGTAAATGGTGTTGCTTTTGGTGGGTCGTGA
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