mRNA_Ecto-sp13_S_contig6734.17644.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6734.17644.1
Unique NamemRNA_Ecto-sp13_S_contig6734.17644.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6734.17644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6734contigEcto-sp13_S_contig6734:1740..2350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size611
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.4022474-UTR-Ecto-sp13_S_contig6734:1739..19031681463926.4022474-UTR-Ecto-sp13_S_contig6734:1739..1903Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6734 1740..1903 +
1681463926.4234414-UTR-Ecto-sp13_S_contig6734:2287..23501681463926.4234414-UTR-Ecto-sp13_S_contig6734:2287..2350Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6734 2288..2350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.4122202-CDS-Ecto-sp13_S_contig6734:1903..22871681463926.4122202-CDS-Ecto-sp13_S_contig6734:1903..2287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6734 1904..2287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6734.17644.1prot_Ecto-sp13_S_contig6734.17644.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6734 1904..2287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6734.17644.1

>prot_Ecto-sp13_S_contig6734.17644.1 ID=prot_Ecto-sp13_S_contig6734.17644.1|Name=mRNA_Ecto-sp13_S_contig6734.17644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MRHEGRRVHVVSTSWPKPKGTQRFRTRWHAAALRLHAAPTITCSYPPLIA
VLEAVTSLVEVSGYALIPYTLVRAVHRQVKVFRTLNCCLSVEEVGAVNVD
EGCSSTVVRDSWGTKSGQSMALIDFPL*
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mRNA from alignment at Ecto-sp13_S_contig6734:1740..2350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6734.17644.1 ID=mRNA_Ecto-sp13_S_contig6734.17644.1|Name=mRNA_Ecto-sp13_S_contig6734.17644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6734:1740..2350+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTATGCATCACTACTGCTGTGCGTATCTCCTGCAAACCCTACCTTTCT
CGCCGTCTTCAGTGCATGAAATAGTCTAATACTCCGTCTCCACGTGGCTC
AATATATAGGTTCACAACGCACCACATCGACAAGTTTCAAATAGAGCCAC
CATGTGTGCATTGTATGCGGCATGAAGGTCGTCGAGTGCATGTTGTGTCA
ACCTCTTGGCCAAAGCCCAAAGGTACACAACGCTTTCGCACACGATGGCA
TGCCGCAGCTCTCAGGTTGCACGCGGCACCTACAATCACGTGTAGCTACC
CGCCTTTGATCGCTGTACTGGAGGCAGTGACATCCCTGGTTGAAGTATCT
GGCTACGCATTGATACCCTACACCCTGGTCCGGGCGGTGCACCGGCAAGT
AAAAGTTTTTCGCACGTTAAACTGCTGTCTGTCCGTTGAGGAGGTCGGTG
CCGTTAATGTGGACGAGGGCTGCTCGAGTACCGTTGTCAGAGACAGCTGG
GGAACGAAGTCCGGTCAATCGATGGCGTTGATTGATTTTCCTCTTTGACC
ATACAAGAGTGCTCCATGAACACTGAAAACTCCCCGGGTGGTGCAACCTG
TCTTCTCTACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6734:1740..2350+

>mRNA_Ecto-sp13_S_contig6734.17644.1 ID=mRNA_Ecto-sp13_S_contig6734.17644.1|Name=mRNA_Ecto-sp13_S_contig6734.17644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6734:1740..2350+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCATGAAGGTCGTCGAGTGCATGTTGTGTCAACCTCTTGGCCAAA
GCCCAAAGGTACACAACGCTTTCGCACACGATGGCATGCCGCAGCTCTCA
GGTTGCACGCGGCACCTACAATCACGTGTAGCTACCCGCCTTTGATCGCT
GTACTGGAGGCAGTGACATCCCTGGTTGAAGTATCTGGCTACGCATTGAT
ACCCTACACCCTGGTCCGGGCGGTGCACCGGCAAGTAAAAGTTTTTCGCA
CGTTAAACTGCTGTCTGTCCGTTGAGGAGGTCGGTGCCGTTAATGTGGAC
GAGGGCTGCTCGAGTACCGTTGTCAGAGACAGCTGGGGAACGAAGTCCGG
TCAATCGATGGCGTTGATTGATTTTCCTCTTTGA
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