mRNA_Ecto-sp13_S_contig6734.17645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6734.17645.1
Unique NamemRNA_Ecto-sp13_S_contig6734.17645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6734.17645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6734contigEcto-sp13_S_contig6734:3336..4757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size257
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.3401518-UTR-Ecto-sp13_S_contig6734:3335..34101681463926.3401518-UTR-Ecto-sp13_S_contig6734:3335..3410Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6734 3336..3410 -
1681463926.3726182-UTR-Ecto-sp13_S_contig6734:4728..47571681463926.3726182-UTR-Ecto-sp13_S_contig6734:4728..4757Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6734 4729..4757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.3534603-CDS-Ecto-sp13_S_contig6734:3410..34471681463926.3534603-CDS-Ecto-sp13_S_contig6734:3410..3447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6734 3411..3447 -
1681463926.363395-CDS-Ecto-sp13_S_contig6734:4612..47281681463926.363395-CDS-Ecto-sp13_S_contig6734:4612..4728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6734 4613..4728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6734.17645.1prot_Ecto-sp13_S_contig6734.17645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6734 3411..4728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6734.17645.1

>prot_Ecto-sp13_S_contig6734.17645.1 ID=prot_Ecto-sp13_S_contig6734.17645.1|Name=mRNA_Ecto-sp13_S_contig6734.17645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MQSIERRSLPSIHDLTADSRSTQVMTALSKRPEETSVRRLDRLPGGRISQ
*
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mRNA from alignment at Ecto-sp13_S_contig6734:3336..4757-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6734.17645.1 ID=mRNA_Ecto-sp13_S_contig6734.17645.1|Name=mRNA_Ecto-sp13_S_contig6734.17645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6734:3336..4757- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACATTAAACGCTCGCTGCCTGCCGGCATGCAGTCGATCGAGAGAAGA
TCGCTCCCAAGCATCCACGACCTGACAGCCGATTCACGATCGACTCAAGT
GATGACGGCGTTGTCGAAACGGCCGGAGGAAACATCGGTCCGACGGTAAG
TGCGCGTGCCTACGGAGATTTTCAGGTAGAGAACGGTGAGAAAAGCCATT
ACTTGCGTCAGGGTTGGCAGCTCGTACACAACACCCCAAGTCCCCCCCCC
CGTTCGGGTTGATTTGGAGAGCGACGTGCACTCTTGCCAAGCAGTTTTCG
GTATCGGGTAGCGGTGATGGCGGTTTTGTTGCTTCTGCTGAGTCCAGGTC
GCGGGGAGCGAGCGTGCCTCGTCGTGAAGGGCTGTTGGTTTTTGTGTGTC
CAGGCGAACTTCAGCAAAGAGATGCGTATGTGTATGATGTACAGTAGTTC
ACGACAACAACTTGAAGGCTATATGTTGCTCACCAGCATTGAGGTGTTTG
TTTTGTCTGAGGCGCGCTCCACCATTCATTCGTGTAAAGGCGCCCGTTAC
CATTGGACGAAACACATACACACACAGAAGGAGAGAGAAAAGCACCTGCG
AGGCATACGCACCTCCTACAGCAGCAGACTTTGATGTATCCAGCAGGCGG
GTGGACATTACCGATGGAAACTGTTGTGTGGTGTCCGTAGATGTGTTCTG
GGATAAAGGACGAAATGCAGGTACCCAACATGAGGTGTACATGTGTATGC
ATACGAAACCGGGCATTTGGCACAGAATCTATGCTGCAGGATAGGTACCC
ACATGCGATCGATTTGCGTTTATGCTATATCAGAATACTCTGCAGTCAGT
AGTCCCGGAAGATGTCGAAAAGCCTCGTCGAGAATTTCAATTACAGGATA
CTGATGATGCGTGGCCAGATCGATGCAGAGAGGTGCGACAATGTACGATT
CACACAAGGTCATTGTTGTGGTGGAGTAACGGAGCAGGTAGGAACAGGAG
CATTAACACATACCCACTCGCCGGGTAGGCAAATCATATGGACGTGCTCG
TTGGTGCAAGAGAGAGAGCGGAGTGTCCGCAACAATCTGTCCGAGCCGCT
AGCCGGTGGTCCGGTCGGCAAATAATTTCCGTTTTGTACAGGCTTTGTAT
GAACAAACTGTATTAACAAACTGCTATTCCGTCTTCAAATTTCAACCATC
TCCTTCCCTGGATGTTTGGGTGGAGCCTTCGTTGGCGGACTTCTACCGCG
CAACAGCTCCTCTTTGCTGCTGTGTGCCCCGTGCACCTCGACCGCTTTGC
CCTGCAGCAGCCTCGACCGACTGCCTGGTGGCAGAATTAGCCAATGAATC
TTCCGAGGGCCGTTAGGCGGACATACCGAAAGGACACCCCGGCGCGAGCA
AGGGTTGGTGAATCGGAAATGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6734:3336..4757-

>mRNA_Ecto-sp13_S_contig6734.17645.1 ID=mRNA_Ecto-sp13_S_contig6734.17645.1|Name=mRNA_Ecto-sp13_S_contig6734.17645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6734:3336..4757- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTCGATCGAGAGAAGATCGCTCCCAAGCATCCACGACCTGACAGC
CGATTCACGATCGACTCAAGTGATGACGGCGTTGTCGAAACGGCCGGAGG
AAACATCGGTCCGACGCCTCGACCGACTGCCTGGTGGCAGAATTAGCCAA
TGA
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