mRNA_Ecto-sp13_S_contig67317.17641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67317.17641.1
Unique NamemRNA_Ecto-sp13_S_contig67317.17641.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: D8LFC6_ECTSI (Homologue of the meiosis-specific protein HOP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 7.270e-17
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    7 SQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY 126
            +QVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY
Sbjct:   45 AQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY 84
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: W4FWS5_9STRA (HORMA domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWS5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.080e-9
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 GTSQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY 126
            G S++TETQSL ++KNLIRVSIS +C+LR +FP + F+ER Y
Sbjct:   30 GNSKITETQSLNVIKNLIRVSISEICYLRNLFPDEVFKERVY 71
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: A0A6G0XR20_9STRA (HORMA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR20_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.510e-8
Identity = 21/42 (50.00%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 GTSQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY 126
             ++++TETQS++++KN+IRVS+S +C+LR +FP + F+ER Y
Sbjct:   29 ASTKITETQSISVIKNMIRVSVSEICYLRNLFPEEVFKERVY 70
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: A0A485K5J0_9STRA (Aste57867_1544 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5J0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.810e-7
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 GTSQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY 126
             ++++T  QSL ++KN+IRVSIS +C+LR IFP + F+ER Y
Sbjct:   24 ASTKITSEQSLNVIKNMIRVSISEICYLRNIFPEEVFRERVY 65
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: A0A8J6E511_9EUKA (Hop1 n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6E511_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 7.030e-7
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   13 VTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERT 123
            +T   SLTL+KNL R SIST+CH RG+ P +CF+E T
Sbjct:   20 ITNQDSLTLLKNLFRTSISTICHFRGLLPPECFEECT 56
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: UPI001D04C4D8 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D04C4D8)

HSP 1 Score: 51.2 bits (121), Expect = 2.790e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 TSQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERT 123
            T  VT  +SLTL++NL+R +IS+VC+LR IFP  CFQ+++
Sbjct:   10 TQSVTYEESLTLMRNLMRTAISSVCYLRNIFPEDCFQDKS 49
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: A0A6A5BFC5_NAEFO (HORMA domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BFC5_NAEFO)

HSP 1 Score: 50.8 bits (120), Expect = 3.810e-6
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 TSQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERT 123
            T  VT  +SLTL++NL+R +IS+VC+LR IFP  CFQ+++
Sbjct:  652 TQSVTFEESLTLMRNLMRTAISSVCYLRNIFPEDCFQDKS 691
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: A0A0L0DH18_THETB (HORMA domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DH18_THETB)

HSP 1 Score: 50.1 bits (118), Expect = 7.140e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 GTSQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERT 123
             T  VT ++SL LV+NL+R SIST+ +LR +FP  CF +RT
Sbjct:   12 ATESVTASESLCLVRNLLRCSISTIAYLRSLFPEHCFYDRT 52
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: A0A5J4YVR6_PORPP (HORMA domain-containing protein 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVR6_PORPP)

HSP 1 Score: 48.9 bits (115), Expect = 1.760e-5
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 SQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERT 123
            S VT+T+SL L+KN +R SIS++ H RG+ P +CF++ T
Sbjct:   21 STVTQTESLALMKNFLRASISSIVHQRGLLPEECFEDAT 59
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BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Match: D8M718_BLAHO (HORMA domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M718_BLAHO)

HSP 1 Score: 47.0 bits (110), Expect = 8.680e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   13 VTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY 126
            VT+ QSL +VKN+IR SIS +C+LR +F   CF ++ Y
Sbjct:   10 VTQQQSLAVVKNMIRTSISEICYLRNLFDEDCFCKKNY 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67317.17641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LFC6_ECTSI7.270e-1797.50Homologue of the meiosis-specific protein HOP1 n=1... [more]
W4FWS5_9STRA2.080e-961.90HORMA domain-containing protein n=2 Tax=Aphanomyce... [more]
A0A6G0XR20_9STRA6.510e-850.00HORMA domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A485K5J0_9STRA5.810e-752.38Aste57867_1544 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8J6E511_9EUKA7.030e-759.46Hop1 n=1 Tax=Carpediemonas membranifera TaxID=2011... [more]
UPI001D04C4D82.790e-655.00uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BFC5_NAEFO3.810e-655.00HORMA domain-containing protein n=1 Tax=Naegleria ... [more]
A0A0L0DH18_THETB7.140e-653.66HORMA domain-containing protein n=1 Tax=Thecamonas... [more]
A0A5J4YVR6_PORPP1.760e-551.28HORMA domain-containing protein 1 n=1 Tax=Porphyri... [more]
D8M718_BLAHO8.680e-552.63HORMA domain-containing protein n=1 Tax=Blastocyst... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67317contigEcto-sp13_S_contig67317:338..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score81.3
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D8LFC6
Preferred nameHORMAD1
Model size126
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K03294,ko:K12778,ko:K15620,ko:K17616
KEGG TC2.A.3.2
KEGG ReactionR03656
KEGG Pathwayko00970,ko04113,map00970,map04113
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000217,GO:0000226,GO:0000228,GO:0000280,GO:0000400,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000819,GO:0001701,GO:0001824,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004721,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007062,GO:0007098,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008150,GO:0008152,GO:0009553,GO:0009554,GO:0009555,GO:0009556,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030997,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033313,GO:0034293,GO:0034641,GO:0035825,GO:0036211,GO:0040020,GO:0042138,GO:0042578,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045835,GO:0046483,GO:0046605,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051026,GO:0051128,GO:0051129,GO:0051177,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051493,GO:0051598,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0060629,GO:0060631,GO:0061982,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1903046,GO:2000241,GO:2000242
Exons1
EggNOG free text desc.regulation of homologous chromosome segregation
EggNOG OGsKOG4652@1,KOG4652@2759
EC6.1.1.5
Cds size126
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.2326224-CDS-Ecto-sp13_S_contig67317:337..4631681463926.2326224-CDS-Ecto-sp13_S_contig67317:337..463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67317 338..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67317.17641.1prot_Ecto-sp13_S_contig67317.17641.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67317 338..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67317.17641.1

>prot_Ecto-sp13_S_contig67317.17641.1 ID=prot_Ecto-sp13_S_contig67317.17641.1|Name=mRNA_Ecto-sp13_S_contig67317.17641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
GTSQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTY
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mRNA from alignment at Ecto-sp13_S_contig67317:338..463-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67317.17641.1 ID=mRNA_Ecto-sp13_S_contig67317.17641.1|Name=mRNA_Ecto-sp13_S_contig67317.17641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67317:338..463- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACGAGTCAGGTGACGGAGACACAGTCTCTAACCCTGGTCAAGAACCT
CATCCGGGTGTCCATCAGCACTGTTTGCCATCTACGCGGCATTTTCCCCG
CTAAGTGCTTCCAGGAGCGGACCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67317:338..463-

>mRNA_Ecto-sp13_S_contig67317.17641.1 ID=mRNA_Ecto-sp13_S_contig67317.17641.1|Name=mRNA_Ecto-sp13_S_contig67317.17641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67317:338..463- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACGAGTCAGGTGACGGAGACACAGTCTCTAACCCTGGTCAAGAACCT
CATCCGGGTGTCCATCAGCACTGTTTGCCATCTACGCGGCATTTTCCCCG
CTAAGTGCTTCCAGGAGCGGACCTAC
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