prot_Ecto-sp13_S_contig6731.17640.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6731.17640.1
Unique Nameprot_Ecto-sp13_S_contig6731.17640.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length36
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.190e-7
Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = 0 
Query:    7 SLDAFCSVCHELLDSPVRTECGHAFCQV 34
            +LDAFCS+C+E+L++PVRT CGH FCQ 
Sbjct:  983 TLDAFCSMCNEILEAPVRTRCGHTFCQA 1010
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BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.100e-6
Identity = 17/28 (60.71%), Postives = 26/28 (92.86%), Query Frame = 0 
Query:    7 SLDAFCSVCHELLDSPVRTECGHAFCQV 34
            S+DAFC +C+++++SPVRT+CGH FCQ+
Sbjct:  955 SVDAFCPICNDIIESPVRTKCGHTFCQL 982
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BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 3.920e-6
Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 0 
Query:    7 SLDAFCSVCHELLDSPVRTECGHAFCQV 34
            S+DAFC +C+++++SPVRT+CGH FCQ 
Sbjct: 1016 SVDAFCPICNDIIESPVRTKCGHIFCQA 1043
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6731.17640.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0S9_ECTSI8.190e-767.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T2_ECTSI2.100e-660.71Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5KW09_9PHAE3.920e-660.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 12..33
e-value: 1.5E-6
score: 28.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..34
e-value: 8.1E-8
score: 34.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 9..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6731contigEcto-sp13_S_contig6731:7879..7986 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6731.17640.1mRNA_Ecto-sp13_S_contig6731.17640.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6731 7879..7986 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6731.17640.1 ID=prot_Ecto-sp13_S_contig6731.17640.1|Name=mRNA_Ecto-sp13_S_contig6731.17640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
GEVLADSLDAFCSVCHELLDSPVRTECGHAFCQVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD