mRNA_Ecto-sp13_S_contig6731.17639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6731.17639.1
Unique NamemRNA_Ecto-sp13_S_contig6731.17639.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6731.17639.1 vs. uniprot
Match: A0A6H5KTG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG5_9PHAE)

HSP 1 Score: 679 bits (1753), Expect = 6.250e-233
Identity = 375/446 (84.08%), Postives = 386/446 (86.55%), Query Frame = 1 
Query:    7 FVATTAADYAARHAAAISIGEMQSQEDLIGGDDIEVDTSQEVHKGERPSAAGLGMEMTQPGVITSPLSLPAKMSPASPDGSLPDSRRGGPGRVEEREDHPHQGKARQGGISRNGDDPTINTRHSRLRRKTTSDVIGGIEKLETAEELKDQTFGPFQKTRLFETSGFLLGQSWPPLPTXXXXXXSIATPTASTDISVYENNEEWCRRWYILQRGKLTAFSGWGGNHTCVGKMALKGCSVEDAPEKVPEGAPFAFRVRAQQCARNDDSPGASWTLQASTRQEKSRWMNAIRGAADREMDDVSPLGSPLNADDTSFVDADSGRSGGGYGKEGGASNSSSGAEQYRILDMFRMSAAAQRGFQESESDSGDSRNSATTSAGEGXXXKAGATRASEKRSAGGPGLTDGGGELELQSSTGLVEAPVEDAEAASVRERSEEWGQEGRSKSCVFQ 1344
            FVATTAADYAARHAA IS+GEMQSQ+DLIGG DIEVDTSQEV KGERPSAAG GMEMTQPGV  SPLSLPA+ SP +PDGSLPDSR GGPGRVEE+EDHPHQGK RQGGISRNGDDPTINTRHSRLRRKTTSDVIGGIEKLETAEELKDQTFGPFQKTRLFETSGFLLGQSWPPLPTXXXXXX              +NNEEWCRRWYILQRGKLTAFSGWGGNHTCVGKMALKGCSVEDAPEKVPEGAPFAFRVRAQQ           W            WMNAIRGAADR+MDDVS  GSPLNADDTSFVDADSGRSGGGYGKEG ASNSSSGAEQ+RILDMFRMS AAQRGFQES+SDSGDSRNSAT S GE    KAGATR SEKR+AGG GLTDGGGELELQSSTGLV+APVEDAEAASVR RSEEWGQEGRSKSCVFQ
Sbjct:  548 FVATTAADYAARHAAPISVGEMQSQKDLIGGGDIEVDTSQEVPKGERPSAAGHGMEMTQPGVNISPLSLPAEKSPTAPDGSLPDSRSGGPGRVEEKEDHPHQGKVRQGGISRNGDDPTINTRHSRLRRKTTSDVIGGIEKLETAEELKDQTFGPFQKTRLFETSGFLLGQSWPPLPTXXXXXXXXXXXXXXXXXXXXDNNEEWCRRWYILQRGKLTAFSGWGGNHTCVGKMALKGCSVEDAPEKVPEGAPFAFRVRAQQ-----------W------------WMNAIRGAADRDMDDVSLPGSPLNADDTSFVDADSGRSGGGYGKEGDASNSSSGAEQHRILDMFRMSPAAQRGFQESDSDSGDSRNSATKSVGERVDGKAGATRGSEKRAAGGLGLTDGGGELELQSSTGLVDAPVEDAEAASVRARSEEWGQEGRSKSCVFQ 970
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6731.17639.1 vs. uniprot
Match: D7FQV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV2_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 5.270e-121
Identity = 195/216 (90.28%), Postives = 203/216 (93.98%), Query Frame = 1 
Query:  697 MALKGCSVEDAPEKVPEGAPFAFRVRAQQCARNDDSPGASWTLQASTRQEKSRWMNAIRGAADREMDDVSPLGSPLNADDTSFVDADSGRSGGGYGKEGGASNSSSGAEQYRILDMFRMSAAAQRGFQESESDSGDSRNSATTSAGEGXXXKAGATRASEKRSAGGPGLTDGGGELELQSSTGLVEAPVEDAEAASVRERSEEWGQEGRSKSCVFQ 1344
            MALKGCSVEDAPEKVPEGAPFAFRVRAQQC RNDD+PGASWTLQASTRQEKSRWMNAIRGAADREMDDVSP GSPLNADDTSFVDADSG SGGGYGKEG ASNSSSGAEQ+R+LDM RMSAAAQRGFQES+SDSGDSRNSA+ SAG+G   KA ATR SEKR+AGG GLTDGGGELELQSS GLV+APVEDAEAASVRERSEEWGQEGRSKSCVFQ
Sbjct:    1 MALKGCSVEDAPEKVPEGAPFAFRVRAQQCPRNDDNPGASWTLQASTRQEKSRWMNAIRGAADREMDDVSPPGSPLNADDTSFVDADSGISGGGYGKEGDASNSSSGAEQHRVLDMLRMSAAAQRGFQESDSDSGDSRNSASKSAGKGVDGKASATRGSEKRAAGGVGLTDGGGELELQSSMGLVDAPVEDAEAASVRERSEEWGQEGRSKSCVFQ 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6731.17639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTG5_9PHAE6.250e-23384.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV2_ECTSI5.270e-12190.28PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6731contigEcto-sp13_S_contig6731:1..3135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1828
Hectar predicted targeting categoryother localisation
Exons4
Cds size1278
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6731.17639.1prot_Ecto-sp13_S_contig6731.17639.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6731 70..2654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.1072-UTR-Ecto-sp13_S_contig6731:0..691681463926.1072-UTR-Ecto-sp13_S_contig6731:0..69Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6731 1..69 +
1681463926.155813-UTR-Ecto-sp13_S_contig6731:2654..31351681463926.155813-UTR-Ecto-sp13_S_contig6731:2654..3135Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6731 2655..3135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.116714-CDS-Ecto-sp13_S_contig6731:69..4891681463926.116714-CDS-Ecto-sp13_S_contig6731:69..489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6731 70..489 +
1681463926.1257973-CDS-Ecto-sp13_S_contig6731:892..11881681463926.1257973-CDS-Ecto-sp13_S_contig6731:892..1188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6731 893..1188 +
1681463926.1352842-CDS-Ecto-sp13_S_contig6731:1782..18511681463926.1352842-CDS-Ecto-sp13_S_contig6731:1782..1851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6731 1783..1851 +
1681463926.1445937-CDS-Ecto-sp13_S_contig6731:2161..26541681463926.1445937-CDS-Ecto-sp13_S_contig6731:2161..2654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6731 2162..2654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6731.17639.1

>prot_Ecto-sp13_S_contig6731.17639.1 ID=prot_Ecto-sp13_S_contig6731.17639.1|Name=mRNA_Ecto-sp13_S_contig6731.17639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
MQSQEDLIGGDDIEVDTSQEVHKGERPSAAGLGMEMTQPGVITSPLSLPA
KMSPASPDGSLPDSRRGGPGRVEEREDHPHQGKARQGGISRNGDDPTINT
RHSRLRRKTTSDVIGGIEKLETAEELKDQTFGPFQKTRLFETSGFLLGQS
WPPLPTPPPPAPSIATPTASTDISVYENNEEWCRRWYILQRGKLTAFSGW
GGNHTCVGKMALKGCSVEDAPEKVPEGAPFAFRVRAQQCARNDDSPGASW
TLQASTRQEKSRWMNAIRGAADREMDDVSPLGSPLNADDTSFVDADSGRS
GGGYGKEGGASNSSSGAEQYRILDMFRMSAAAQRGFQESESDSGDSRNSA
TTSAGEGGDGKAGATRASEKRSAGGPGLTDGGGELELQSSTGLVEAPVED
AEAASVRERSEEWGQEGRSKSCVFQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig6731:1..3135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6731.17639.1 ID=mRNA_Ecto-sp13_S_contig6731.17639.1|Name=mRNA_Ecto-sp13_S_contig6731.17639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6731:1..3135+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCGTTCGTTGCTACCACTGCAGCAGACTACGCCGCTCGCCACGCAGC
CGCGATCAGTATCGGGGAGATGCAGAGCCAGGAAGACTTAATCGGGGGAG
ACGACATTGAGGTCGATACCTCGCAGGAGGTGCACAAAGGAGAGCGACCG
TCCGCCGCCGGCCTTGGCATGGAAATGACCCAGCCAGGTGTGATCACATC
ACCGCTTTCACTCCCTGCGAAAATGTCACCTGCTTCGCCCGATGGGTCAC
TACCCGACTCCCGCAGGGGAGGGCCAGGGAGAGTCGAAGAGAGAGAGGAT
CATCCTCACCAGGGTAAGGCAAGGCAAGGTGGGATCTCAAGGAACGGCGA
CGATCCCACGATCAACACACGACACTCAAGATTAAGGCGGAAGACGACGA
GCGACGTAATTGGAGGAATTGAAAAGTTGGAGACTGCGGAGGAGCTCAAA
GATCAGACTTTTGGACCCTTTCAGAAGACCCGTTTATTTGTGAGTTTTCA
TTGACTTTATCGGTACGGTATGAGGAGTCGCCGTGGAGAACCTCGTTGCT
GGTTGTGCTTGGAGGTTTCATATCGTGCAAAAGACTGAAGACCATCGGTC
ATTGCACGCTAACCGCACCCCTTTCTTCTTCTCTTGCCTCCCATTTCTAG
TGCCCTTCTTTGCTTTATCTTGGTGCGTCGCAATGATGTCGCTACGCATT
CTACAAGCGTGTGGTGATGTTCCATCCTTTGGCACAAAGCGTATTGTTGT
ACTGGACAAAAGAAGCTTTGTTCCTCAAGCCAGTACCGCCGAGCCGGAAT
TCGAACGGCTTTTCGCCAACGGTTTCGTTTTTCTTCACGCCTCTCCTTGA
AAGCACAACCTGCTTTTTATTCCGCAAAATATAAACGAACAGGAAACCAG
TGGCTTCTTGTTGGGGCAGTCGTGGCCGCCGCTGCCTACACCGCCCCCAC
CCGCCCCTTCAATCGCCACCCCTACCGCCTCTACGGACATAAGTGTTTAC
GAAAACAACGAAGAATGGTGCCGGCGATGGTATATCTTGCAACGCGGCAA
GCTCACGGCCTTTTCTGGATGGGGAGGGAACCACACGTGCGTGGGGAAGA
TGGCGCTCAAGGGCTGTTCCGTCGAGGACGCACCCGAAAAGGTCCCGGAG
GGGGCGCCATTCGCGTTTCGCGTGAGGGCGCAACAGTGGTGAGTTTGCTG
CTTCCGAGCGTCTTGGTTCTCGAGCAAACTCATTTATTCCTCGTGATATG
CTCTGTGCCCTCGTACCCCAGAGTGTGGCTTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGATGGTGGTGGTGTAGTATGGGTGACGGTTTGATGCCAAAAG
TTCAACTCGATACTTCATCATCCAGTGTTTGTGCTAAACGGGCAGACCAC
AGTGCTACGATGTACTCTGATCGTGAGATAGGCTTTGAAAGGAGTCATTG
ATGAAGAACTCGCAGAACACGCCGTGGAGGTACATTGTTGCTCTCGAGGT
TCTCACTATTGTGGGCGCGACAGCTGTTTAATATGCCAATACCGCAATCA
AGCACTACGTTTGCGCGGTAGAGGCAGAACGACCCCCGTGCCCCCTTTCC
GACGTGCCTGGTTACTTACAATGGTGACGATGCGCAAGAGCCAACTGACT
AAACTCCGAGCCACCCTGTATCTGTACCGTTTAGGGCCACTCTGTGCGCC
CAACCGCTCGCGGTGAGCAGTAACCAATCCCCCTCTTGCACGCCGCAACG
CTGAAACGCTTAACGTCGAATTTTTCGTGCAGCGCTAGAAACGATGACAG
CCCCGGGGCTTCATGGACGCTGCAGGCCAGCACTCGCCAAGAGAAGTCCC
GGTAAAGTGCAGACCTACGTCAGTTTGTACGCGAGCGTTGCTCCGGGTGG
TGGTTGGCAACTTCTACCACGAGCTTGGCCCATTCAGTGCGAAGTTTAAG
TTTTGTCGTGGAGAAAAAGAGATCTTTAGGGTTCTCGACCCAGCTCCTGT
ATCCAATCCCCCTTCGTAGTGCACAAGTATATCCCCGCACTCGGAACTGT
TGTCCGAGGAGCGCGCGTGACGGTAGCCAAATCGAAACATACAAGTTCAT
GACATGTATGCATACGCCAGAACAAGAACATTTTCTTCCCTGCCCGTTCT
ACCTATCGAAGGTGGATGAACGCCATCCGTGGAGCCGCAGACCGGGAAAT
GGACGACGTTTCGCCCCTGGGCTCTCCCCTAAACGCAGATGACACAAGTT
TTGTTGACGCTGACTCTGGAAGAAGCGGGGGGGGCTACGGGAAGGAGGGG
GGCGCAAGCAACTCCAGCTCCGGTGCCGAGCAGTACCGTATTCTGGACAT
GTTCCGGATGTCGGCTGCCGCACAGCGAGGTTTTCAAGAGAGCGAGAGCG
ACAGCGGTGACAGCAGAAACAGTGCTACTACATCGGCCGGGGAGGGAGGT
GATGGAAAGGCAGGCGCGACAAGGGCATCAGAGAAACGCTCTGCTGGTGG
CCCGGGCTTGACTGACGGTGGGGGAGAATTGGAGTTGCAGTCATCGACTG
GCTTGGTAGAAGCTCCGGTGGAGGACGCCGAAGCGGCATCTGTCAGAGAG
CGCAGCGAGGAATGGGGGCAGGAGGGACGGTCTAAATCATGTGTCTTTCA
GTAGAACATGCGTAGACAGACGTGGGTATCCCAAGTTTTGTCGATAGGCT
CATCATTGGAGACATCGTGCTGAAGACATGCGTGAGAAAAAAAGTCGTCA
CTCTACGTTCGCTTCCTGGTGAAAACTTCGTGTCTTCCTACCAGTACGAC
AGACCAATCTTGTGCATATTTGTTTGAGCATGCCCGACATGTCTAAAAGC
CATTTCAACGTACATATGAAGATGTTGTCAGAAGATACATGTCACTATCA
TGCGTAGATATTCGTTGACGAACCGTTTGGTTGACTCTTGGCCTACGAAT
TTAGTGTTAGCACGTGACGTCCGTAGGACTAGCTCAAGTTCTTGGCATCA
TAAACGTGGTGTCTCCTCACCCTCGCGAGACGATGGCAGTCAAACGATTA
CAAATCGATCGGCGGGTGCGACGTTCATTTTTAGAACCAAATCGGGTTGT
TTGTTTGGTAGGCAGACGGTTTGGGAACCACTTTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6731:1..3135+

>mRNA_Ecto-sp13_S_contig6731.17639.1 ID=mRNA_Ecto-sp13_S_contig6731.17639.1|Name=mRNA_Ecto-sp13_S_contig6731.17639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6731:1..3135+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCCAGGAAGACTTAATCGGGGGAGACGACATTGAGGTCGATAC
CTCGCAGGAGGTGCACAAAGGAGAGCGACCGTCCGCCGCCGGCCTTGGCA
TGGAAATGACCCAGCCAGGTGTGATCACATCACCGCTTTCACTCCCTGCG
AAAATGTCACCTGCTTCGCCCGATGGGTCACTACCCGACTCCCGCAGGGG
AGGGCCAGGGAGAGTCGAAGAGAGAGAGGATCATCCTCACCAGGGTAAGG
CAAGGCAAGGTGGGATCTCAAGGAACGGCGACGATCCCACGATCAACACA
CGACACTCAAGATTAAGGCGGAAGACGACGAGCGACGTAATTGGAGGAAT
TGAAAAGTTGGAGACTGCGGAGGAGCTCAAAGATCAGACTTTTGGACCCT
TTCAGAAGACCCGTTTATTTGAAACCAGTGGCTTCTTGTTGGGGCAGTCG
TGGCCGCCGCTGCCTACACCGCCCCCACCCGCCCCTTCAATCGCCACCCC
TACCGCCTCTACGGACATAAGTGTTTACGAAAACAACGAAGAATGGTGCC
GGCGATGGTATATCTTGCAACGCGGCAAGCTCACGGCCTTTTCTGGATGG
GGAGGGAACCACACGTGCGTGGGGAAGATGGCGCTCAAGGGCTGTTCCGT
CGAGGACGCACCCGAAAAGGTCCCGGAGGGGGCGCCATTCGCGTTTCGCG
TGAGGGCGCAACAGTGCGCTAGAAACGATGACAGCCCCGGGGCTTCATGG
ACGCTGCAGGCCAGCACTCGCCAAGAGAAGTCCCGGTGGATGAACGCCAT
CCGTGGAGCCGCAGACCGGGAAATGGACGACGTTTCGCCCCTGGGCTCTC
CCCTAAACGCAGATGACACAAGTTTTGTTGACGCTGACTCTGGAAGAAGC
GGGGGGGGCTACGGGAAGGAGGGGGGCGCAAGCAACTCCAGCTCCGGTGC
CGAGCAGTACCGTATTCTGGACATGTTCCGGATGTCGGCTGCCGCACAGC
GAGGTTTTCAAGAGAGCGAGAGCGACAGCGGTGACAGCAGAAACAGTGCT
ACTACATCGGCCGGGGAGGGAGGTGATGGAAAGGCAGGCGCGACAAGGGC
ATCAGAGAAACGCTCTGCTGGTGGCCCGGGCTTGACTGACGGTGGGGGAG
AATTGGAGTTGCAGTCATCGACTGGCTTGGTAGAAGCTCCGGTGGAGGAC
GCCGAAGCGGCATCTGTCAGAGAGCGCAGCGAGGAATGGGGGCAGGAGGG
ACGGTCTAAATCATGTGTCTTTCAGTAG
back to top