mRNA_Ecto-sp13_S_contig673.17635.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: D7G767_ECTSI (Selenoprotein T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G767_ECTSI) HSP 1 Score: 394 bits (1012), Expect = 8.880e-134 Identity = 211/218 (96.79%), Postives = 211/218 (96.79%), Query Frame = 2
Query: 2 EDEFAGMGGSTKNTGEGSLGSSNSDFARSAAQQLAVADSSVEFGGAASLGAVTGAGADGSGGDVPQVLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRST 655
EDEFAGMGGSTKNTG GSLGSSN D ARSAAQQLAVADSSVEFGG ASLGAVTGAGA GSGGDVPQVLVQFCVS GMRRNFEELRSFLHAHYPALAKAQSIRGELYP PPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRST
Sbjct: 90 EDEFAGMGGSTKNTGGGSLGSSNRDDARSAAQQLAVADSSVEFGGTASLGAVTGAGAVGSGGDVPQVLVQFCVSXGMRRNFEELRSFLHAHYPALAKAQSIRGELYPPPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRST 307
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: A0A6H5JJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI0_9PHAE) HSP 1 Score: 119 bits (298), Expect = 5.880e-30 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = -2
Query: 364 MDTSKAPVAKREPQNEFATVSPTIVAIGLRRITGTKNGAGTPSLSKMREPNRTEATPPTCA 546
MDTSKAPVAKREPQNEFATVSPTIVAIGLRRITGTKNGAGTPSLSKMREPNRTEATPP CA
Sbjct: 1 MDTSKAPVAKREPQNEFATVSPTIVAIGLRRITGTKNGAGTPSLSKMREPNRTEATPPICA 61
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: A0A7S2D3C0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3C0_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.830e-24 Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 2
Query: 230 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSV 646
M+RNF ELR+FL YP L I GE YP PP A + Q+GG+ ++FGS IF+ LG+P P + ++ N M G+ NS SL TGAFEV +DGE+V+S+L G+ P G L+ E++G+ V
Sbjct: 1 MKRNFVELRNFLAHRYPELQG--KIAGENYPPPPYANLAVSAAGTVQMGGIVLMMFGSQIFNTLGMPEPEWYKELQENKMMAFCGVFFMNSMANSLTTTGAFEVLLDGEVVYSKLE-TGRMPNGRQLIELMEQKGIEMV 136
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: A0A835Z5V2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V2_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.280e-22 Identity = 63/140 (45.00%), Postives = 78/140 (55.71%), Query Frame = 2
Query: 230 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVR 649
M+ NF ELR FL YP L + G+ YP P AQ A+L Q+ G S+L G L+F LG+ P ++ + I GL V NS + LATGAFEV IDGEL SRLA GQFP A +LR F + GL V+
Sbjct: 1 MKGNFLELRKFLEFTYPELRGR--VAGQHYPPPQWAQTAASLAQVLQLAGTISILAGGLVFGALGMEPPGAFAAVQEHKWPVIGGLFVLNSMANAALATGAFEVFIDGELALSRLA-TGQFPGRADILRAFAQHGLVPVQ 137
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: A0A6S9L5H0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9L5H0_HETAK) HSP 1 Score: 94.7 bits (234), Expect = 1.000e-19 Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 2
Query: 230 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAP-FFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFP 595
M+RNF EL+ FL YP L +++G YP PP A ALA LG+ A GG+A G +F +G+ AP + M+ NPM + GL N+ G TGAFEV ++GE VFS+L G+FP
Sbjct: 1 MQRNFIELQKFLEYSYPELVG--NVQGTFYPPPPFALALANLGTLALWGGIALTFLGETLFRAVGLAAPPGWFQSMKANPMPVVGGLFALNAVAGGFAKTGAFEVYLNGETVFSKLES-GRFP 120
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: F0YLT9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLT9_AURAN) HSP 1 Score: 93.2 bits (230), Expect = 8.530e-19 Identity = 60/166 (36.14%), Postives = 88/166 (53.01%), Query Frame = 2
Query: 137 AASLGAVTGAGADGSGGDVPQVLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRG 634
AA+ A AG + GD +VLV+ C S G +RN+ ELR FL YP L +S+ E YP P + A AQV VA +L G +F G P + + N M + +AN+ ++ATGAFE+ ++GEL FS+L G+ P+ A ++R ++ G
Sbjct: 4 AAAKRAAPAAGGARANGDA-EVLVKLCTSXGTQRNYLELRKFLEDAYPGL---RSVAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQMVATGAFEIHVNGELAFSKLE-TGRLPSAADVVRGMKRAG 164
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: A0A7S2V5G7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5G7_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.430e-17 Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 2
Query: 194 PQVLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLR 640
PQV+V++C M++NFEE++ FL YP L SI G+ YP P + ++ +GS + + ++ GS +F ++G+P P ++ + N M +G+ N ++ TGAFEV +D +L+FS+L +FP+ L + GLR
Sbjct: 131 PQVIVKYCPQSNMKKNFEEMQQFLEYRYPQLVG--SIHGQNYPLPFHIKVISKIGSSLHLLSLVFLMGGSFVFQKMGIPEPSWLDWAKNNRMQVFIGIFGINYVTSNMAKTGAFEVFLDDDLIFSKLE-MNKFPSVQDLQVGLAQFGLR 276
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: A0A7S2PKB4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKB4_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.290e-15 Identity = 52/140 (37.14%), Postives = 77/140 (55.00%), Query Frame = 2
Query: 230 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRL----GVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGL 637
M RN+ +LR FL ++P L +I G YP P A L+ L Q+ +A+V G I+ + G P P + P ++ NPM + L + NS S+ TGAFEV +DG +VFS+L G+ P+G +L+ F+ GL
Sbjct: 1 MSRNYVQLRQFLEQNFPELEG--NIHGSNYPPPEFAVYLSQLIGILQIFAMAAVFMGDAIWQFVPFMNGQP-PGWWPQVKENPMLVVCTLFMGNSIANSMTTTGAFEVLLDGVVVFSKLE-TGRMPSGPEILQVFKGAGL 136
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: A0A7S1ZVC8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZVC8_TRICV) HSP 1 Score: 77.8 bits (190), Expect = 1.160e-13 Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 2
Query: 230 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRL----GVPAPFFVPVMRRNPMATIVG-LTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSV 646
M RNF ELR +L YP L I GE YP PP A A A S AQV +A+V G +++ + G P +F M+ N ++G V + + TGAFE+ +DG++VFS+L G+FP G ++ G+++V
Sbjct: 1 MARNFMELRKYLEGSYPELRGR--ITGENYPIPPAAAAFANFVSIAQVFLMATVFMGDAVWNYVPFFSGPPDWYFA--MKENSAVVVIGAFLVVPTIAQKYVTTGAFEIILDGQVVFSKLE-LGRFPNGNDIMEIMTNAGMKAV 139
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Match: T0RNF5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RNF5_SAPDV) HSP 1 Score: 79.7 bits (195), Expect = 1.290e-13 Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 2
Query: 200 VLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPA--PFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRL 574
V+V++CVS G NF+E++++L HYP L + G P L T+ YAQ G +L G I L +PA P FV R N A GL + +S S+ ATGAFEV ++G LVFS++
Sbjct: 37 VVVEYCVSCGYANNFKEVQTYLETHYPHLIGR--VTGGNASPPAWKYYLGTIVGYAQAVGFIFLLAGEHILSALNLPADMPLFVQT-RDNKFAVFAGLMLLSSISQSMSATGAFEVYLNGTLVFSKI 160 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig673.17635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig673.17635.1 >prot_Ecto-sp13_S_contig673.17635.1 ID=prot_Ecto-sp13_S_contig673.17635.1|Name=mRNA_Ecto-sp13_S_contig673.17635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGback to top mRNA from alignment at Ecto-sp13_S_contig673:9862..11041+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig673.17635.1 ID=mRNA_Ecto-sp13_S_contig673.17635.1|Name=mRNA_Ecto-sp13_S_contig673.17635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig673:9862..11041+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig673:9862..11041+ >mRNA_Ecto-sp13_S_contig673.17635.1 ID=mRNA_Ecto-sp13_S_contig673.17635.1|Name=mRNA_Ecto-sp13_S_contig673.17635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig673:9862..11041+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |