prot_Ecto-sp13_S_contig673.17634.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig673.17634.1
Unique Nameprot_Ecto-sp13_S_contig673.17634.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length163
Homology
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BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: D7G767_ECTSI (Selenoprotein T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G767_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 3.070e-88
Identity = 149/163 (91.41%), Postives = 150/163 (92.02%), Query Frame = 0 
Query:    1 MVEPGAAAGQPPGGERNGMSFSNRILLLAILYFFIKRYVGDGAAGKSPATSDKAPAGAASAAHEVPVAPLAESVPTKH-NHARPAIDGPEDEFAGMGGSTKNTGEGSLGSSNSDFARSAAQQLAVADSSVEFGGAASLGAVTGAGADGSGGDVPQVLVQFCVS 162
            MVEPGA AGQPPGGERNGMSFSNR+LLLAILY FIKRYVGDGAAGKSPATSDK PAGAAS A EVPVAPLAE VPTKH NHARPAID PEDEFAGMGGSTKNTG GSLGSSN D ARSAAQQLAVADSSVEFGG ASLGAVTGAGA GSGGDVPQVLVQFCVS
Sbjct:    1 MVEPGADAGQPPGGERNGMSFSNRMLLLAILYLFIKRYVGDGAAGKSPATSDKPPAGAASGAREVPVAPLAEIVPTKHMNHARPAIDDPEDEFAGMGGSTKNTGGGSLGSSNRDDARSAAQQLAVADSSVEFGGTASLGAVTGAGAVGSGGDVPQVLVQFCVS 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G767_ECTSI3.070e-8891.41Selenoprotein T n=1 Tax=Ectocarpus siliculosus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig673contigEcto-sp13_S_contig673:5817..10087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig673.17634.1mRNA_Ecto-sp13_S_contig673.17634.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig673 5817..10516 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig673.17634.1 ID=prot_Ecto-sp13_S_contig673.17634.1|Name=mRNA_Ecto-sp13_S_contig673.17634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MVEPGAAAGQPPGGERNGMSFSNRILLLAILYFFIKRYVGDGAAGKSPAT
SDKAPAGAASAAHEVPVAPLAESVPTKHNHARPAIDGPEDEFAGMGGSTK
NTGEGSLGSSNSDFARSAAQQLAVADSSVEFGGAASLGAVTGAGADGSGG
DVPQVLVQFCVS*
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