mRNA_Ecto-sp13_S_contig673.17634.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: D7G767_ECTSI (Selenoprotein T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G767_ECTSI) HSP 1 Score: 540 bits (1392), Expect = 4.970e-193 Identity = 291/307 (94.79%), Postives = 292/307 (95.11%), Query Frame = 1
Query: 1 MVEPGAAAGQPPGGERNGMSFSNRILLLAILYFFIKRYVGDGAAGKSPATSDKAPAGAASAAHEVPVAPLAESVPTKH-NHARPAIDGPEDEFAGMGGSTKNTGEGSLGSSNSDFARSAAQQLAVADSSVEFGGAASLGAVTGAGADGSGGDVPQVLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRST 918
MVEPGA AGQPPGGERNGMSFSNR+LLLAILY FIKRYVGDGAAGKSPATSDK PAGAAS A EVPVAPLAE VPTKH NHARPAID PEDEFAGMGGSTKNTG GSLGSSN D ARSAAQQLAVADSSVEFGG ASLGAVTGAGA GSGGDVPQVLVQFCVS GMRRNFEELRSFLHAHYPALAKAQSIRGELYP PPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRST
Sbjct: 1 MVEPGADAGQPPGGERNGMSFSNRMLLLAILYLFIKRYVGDGAAGKSPATSDKPPAGAASGAREVPVAPLAEIVPTKHMNHARPAIDDPEDEFAGMGGSTKNTGGGSLGSSNRDDARSAAQQLAVADSSVEFGGTASLGAVTGAGAVGSGGDVPQVLVQFCVSXGMRRNFEELRSFLHAHYPALAKAQSIRGELYPPPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRST 307
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: A0A6H5JJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI0_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.000e-30 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = -2
Query: 627 MDTSKAPVAKREPQNEFATVSPTIVAIGLRRITGTKNGAGTPSLSKMREPNRTEATPPTCA 809
MDTSKAPVAKREPQNEFATVSPTIVAIGLRRITGTKNGAGTPSLSKMREPNRTEATPP CA
Sbjct: 1 MDTSKAPVAKREPQNEFATVSPTIVAIGLRRITGTKNGAGTPSLSKMREPNRTEATPPICA 61
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: A0A7S2D3C0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3C0_9STRA) HSP 1 Score: 106 bits (265), Expect = 8.660e-25 Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 1
Query: 493 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSV 909
M+RNF ELR+FL YP L I GE YP PP A + Q+GG+ ++FGS IF+ LG+P P + ++ N M G+ NS SL TGAFEV +DGE+V+S+L G+ P G L+ E++G+ V
Sbjct: 1 MKRNFVELRNFLAHRYPELQG--KIAGENYPPPPYANLAVSAAGTVQMGGIVLMMFGSQIFNTLGMPEPEWYKELQENKMMAFCGVFFMNSMANSLTTTGAFEVLLDGEVVYSKLE-TGRMPNGRQLIELMEQKGIEMV 136
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: A0A835Z5V2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V2_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.020e-23 Identity = 62/136 (45.59%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 493 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGL 900
M+ NF ELR FL YP L + G+ YP P AQ A+L Q+ G S+L G L+F LG+ P ++ + I GL V NS + LATGAFEV IDGEL SRLA GQFP A +LR F + GL
Sbjct: 1 MKGNFLELRKFLEFTYPELRGR--VAGQHYPPPQWAQTAASLAQVLQLAGTISILAGGLVFGALGMEPPGAFAAVQEHKWPVIGGLFVLNSMANAALATGAFEVFIDGELALSRLA-TGQFPGRADILRAFAQHGL 133
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: A0A6S9L5H0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9L5H0_HETAK) HSP 1 Score: 94.7 bits (234), Expect = 2.870e-20 Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 493 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAP-FFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFP 858
M+RNF EL+ FL YP L +++G YP PP A ALA LG+ A GG+A G +F +G+ AP + M+ NPM + GL N+ G TGAFEV ++GE VFS+L G+FP
Sbjct: 1 MQRNFIELQKFLEYSYPELVG--NVQGTFYPPPPFALALANLGTLALWGGIALTFLGETLFRAVGLAAPPGWFQSMKANPMPVVGGLFALNAVAGGFAKTGAFEVYLNGETVFSKLES-GRFP 120
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: F0YLT9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLT9_AURAN) HSP 1 Score: 92.8 bits (229), Expect = 3.510e-19 Identity = 60/166 (36.14%), Postives = 88/166 (53.01%), Query Frame = 1
Query: 400 AASLGAVTGAGADGSGGDVPQVLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRG 897
AA+ A AG + GD +VLV+ C S G +RN+ ELR FL YP L +S+ E YP P + A AQV VA +L G +F G P + + N M + +AN+ ++ATGAFE+ ++GEL FS+L G+ P+ A ++R ++ G
Sbjct: 4 AAAKRAAPAAGGARANGDA-EVLVKLCTSXGTQRNYLELRKFLEDAYPGL---RSVAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQMVATGAFEIHVNGELAFSKLE-TGRLPSAADVVRGMKRAG 164
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: A0A7S2V5G7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5G7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.010e-17 Identity = 44/127 (34.65%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 457 PQVLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRL 837
PQV+V++C M++NFEE++ FL YP L SI G+ YP P + ++ +GS + + ++ GS +F ++G+P P ++ + N M +G+ N ++ TGAFEV +D +L+FS+L
Sbjct: 131 PQVIVKYCPQSNMKKNFEEMQQFLEYRYPQLVG--SIHGQNYPLPFHIKVISKIGSSLHLLSLVFLMGGSFVFQKMGIPEPSWLDWAKNNRMQVFIGIFGINYVTSNMAKTGAFEVFLDDDLIFSKL 255
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: A0A7S2PKB4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKB4_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.670e-15 Identity = 52/140 (37.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query: 493 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRL----GVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGL 900
M RN+ +LR FL ++P L +I G YP P A L+ L Q+ +A+V G I+ + G P P + P ++ NPM + L + NS S+ TGAFEV +DG +VFS+L G+ P+G +L+ F+ GL
Sbjct: 1 MSRNYVQLRQFLEQNFPELEG--NIHGSNYPPPEFAVYLSQLIGILQIFAMAAVFMGDAIWQFVPFMNGQP-PGWWPQVKENPMLVVCTLFMGNSIANSMTTTGAFEVLLDGVVVFSKLE-TGRMPSGPEILQVFKGAGL 136
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: T0RNF5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RNF5_SAPDV) HSP 1 Score: 79.7 bits (195), Expect = 5.240e-14 Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 1
Query: 463 VLVQFCVS*GMRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPA--PFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRL 837
V+V++CVS G NF+E++++L HYP L + G P L T+ YAQ G +L G I L +PA P FV R N A GL + +S S+ ATGAFEV ++G LVFS++
Sbjct: 37 VVVEYCVSCGYANNFKEVQTYLETHYPHLIGR--VTGGNASPPAWKYYLGTIVGYAQAVGFIFLLAGEHILSALNLPADMPLFVQT-RDNKFAVFAGLMLLSSISQSMSATGAFEVYLNGTLVFSKI 160
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Match: A0A7S1ZVC8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZVC8_TRICV) HSP 1 Score: 77.4 bits (189), Expect = 7.080e-14 Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query: 493 MRRNFEELRSFLHAHYPALAKAQSIRGELYPSPPMAQALATLGSYAQVGGVASVLFGSLIFDRL----GVPAPFFVPVMRRNPMATIVG-LTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSV 909
M RNF ELR +L YP L I GE YP PP A A A S AQV +A+V G +++ + G P +F M+ N ++G V + + TGAFE+ +DG++VFS+L G+FP G ++ G+++V
Sbjct: 1 MARNFMELRKYLEGSYPELRGR--ITGENYPIPPAAAAFANFVSIAQVFLMATVFMGDAVWNYVPFFSGPPDWYFA--MKENSAVVVIGAFLVVPTIAQKYVTTGAFEIILDGQVVFSKLE-LGRFPNGNDIMEIMTNAGMKAV 139 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig673.17634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig673.17634.1 >prot_Ecto-sp13_S_contig673.17634.1 ID=prot_Ecto-sp13_S_contig673.17634.1|Name=mRNA_Ecto-sp13_S_contig673.17634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp MVEPGAAAGQPPGGERNGMSFSNRILLLAILYFFIKRYVGDGAAGKSPATback to top mRNA from alignment at Ecto-sp13_S_contig673:5817..10516+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig673.17634.1 ID=mRNA_Ecto-sp13_S_contig673.17634.1|Name=mRNA_Ecto-sp13_S_contig673.17634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4700bp|location=Sequence derived from alignment at Ecto-sp13_S_contig673:5817..10516+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig673:5817..10516+ >mRNA_Ecto-sp13_S_contig673.17634.1 ID=mRNA_Ecto-sp13_S_contig673.17634.1|Name=mRNA_Ecto-sp13_S_contig673.17634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig673:5817..10516+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |