prot_Ecto-sp13_S_contig6729.17631.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6729.17631.1
Unique Nameprot_Ecto-sp13_S_contig6729.17631.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length145
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6729.17631.1 vs. uniprot
Match: A0A6H5L6C7_9PHAE (GOLD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6C7_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 4.960e-86
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 0 
Query:    4 FRYALALVGLSIAYGIEPTPILIDVLPGETRCVGDSVPVGEDTTFTFRAAPVDGPFLDKVKVILEHPNGEEPFIAELTEEKQFHRVDKGEGGGTYRVCFHNLKTKGRSTRVELVETTSAVTKVASQVAKHLQPADELLKHAK 145
            FRYAL LVGLSIAYGIEPTPILIDVLPGETRCVGDSV VGEDTTFTFRAAPVDGPF DKVKVILEHPNGEEPFIAELTEE++ HRVDKGEGGGTYRVCF N+KTKGRSTRVELVETT AVT+ ASQVAKHLQP DELLKHAK
Sbjct:    3 FRYALVLVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRAAPVDGPFSDKVKVILEHPNGEEPFIAELTEERESHRVDKGEGGGTYRVCFRNMKTKGRSTRVELVETTLAVTQGASQVAKHLQPVDELLKHAK 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6729.17631.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6C7_9PHAE4.960e-8691.55GOLD domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 26..142
e-value: 2.2E-7
score: 31.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..145
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.615

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6729contigEcto-sp13_S_contig6729:5464..7878 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6729.17631.1mRNA_Ecto-sp13_S_contig6729.17631.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6729 5464..7878 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6729.17631.1 ID=prot_Ecto-sp13_S_contig6729.17631.1|Name=mRNA_Ecto-sp13_S_contig6729.17631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MQLFRYALALVGLSIAYGIEPTPILIDVLPGETRCVGDSVPVGEDTTFTF
RAAPVDGPFLDKVKVILEHPNGEEPFIAELTEEKQFHRVDKGEGGGTYRV
CFHNLKTKGRSTRVELVETTSAVTKVASQVAKHLQPADELLKHAK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom