mRNA_Ecto-sp13_S_contig6729.17631.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6729.17631.1
Unique NamemRNA_Ecto-sp13_S_contig6729.17631.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6729.17631.1 vs. uniprot
Match: A0A6H5L6C7_9PHAE (GOLD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6C7_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 4.960e-86
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 1 
Query:   10 FRYALALVGLSIAYGIEPTPILIDVLPGETRCVGDSVPVGEDTTFTFRAAPVDGPFLDKVKVILEHPNGEEPFIAELTEEKQFHRVDKGEGGGTYRVCFHNLKTKGRSTRVELVETTSAVTKVASQVAKHLQPADELLKHAK 435
            FRYAL LVGLSIAYGIEPTPILIDVLPGETRCVGDSV VGEDTTFTFRAAPVDGPF DKVKVILEHPNGEEPFIAELTEE++ HRVDKGEGGGTYRVCF N+KTKGRSTRVELVETT AVT+ ASQVAKHLQP DELLKHAK
Sbjct:    3 FRYALVLVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRAAPVDGPFSDKVKVILEHPNGEEPFIAELTEERESHRVDKGEGGGTYRVCFRNMKTKGRSTRVELVETTLAVTQGASQVAKHLQPVDELLKHAK 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6729.17631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6C7_9PHAE4.960e-8691.55GOLD domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6729contigEcto-sp13_S_contig6729:5464..7878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size435
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionGOLD
Ec32 orthologEc-28_000220.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463925.3895965-CDS-Ecto-sp13_S_contig6729:5463..55641681463925.3895965-CDS-Ecto-sp13_S_contig6729:5463..5564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6729 5464..5564 +
1681463925.4421523-CDS-Ecto-sp13_S_contig6729:6838..69041681463925.4421523-CDS-Ecto-sp13_S_contig6729:6838..6904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6729 6839..6904 +
1681463925.4530458-CDS-Ecto-sp13_S_contig6729:7305..74831681463925.4530458-CDS-Ecto-sp13_S_contig6729:7305..7483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6729 7306..7483 +
1681463925.4637017-CDS-Ecto-sp13_S_contig6729:7788..78781681463925.4637017-CDS-Ecto-sp13_S_contig6729:7788..7878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6729 7789..7878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6729.17631.1prot_Ecto-sp13_S_contig6729.17631.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6729 5464..7878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6729.17631.1

>prot_Ecto-sp13_S_contig6729.17631.1 ID=prot_Ecto-sp13_S_contig6729.17631.1|Name=mRNA_Ecto-sp13_S_contig6729.17631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MQLFRYALALVGLSIAYGIEPTPILIDVLPGETRCVGDSVPVGEDTTFTF
RAAPVDGPFLDKVKVILEHPNGEEPFIAELTEEKQFHRVDKGEGGGTYRV
CFHNLKTKGRSTRVELVETTSAVTKVASQVAKHLQPADELLKHAK
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mRNA from alignment at Ecto-sp13_S_contig6729:5464..7878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6729.17631.1 ID=mRNA_Ecto-sp13_S_contig6729.17631.1|Name=mRNA_Ecto-sp13_S_contig6729.17631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2415bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6729:5464..7878+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACTCTTCCGTTACGCCCTGGCGTTGGTCGGACTATCCATTGCGTA
CGGGATAGAGCCCACTCCTATCCTGATTGACGTATTACCGGGAGAGACAA
GGTACGAACGTTTACGTTGTGTTGGTAGTCTGTGATGTAGTTACCCCGCT
TGCCTGGATACCTGCTCTGCTGCTGCCTGTTTTGGACACTCTTGCCATAC
AAGCCATACGTGCATACATGTACGCTGCATCAGCTTACAGTGCTCTGTAG
CTAGAGTGTACACAGCAGAACATCGCATAGGTTACTCAACTTTTTGGATT
AAGATCATTATTTTGGTCCCACACCGACACCGCAGCAATGCATGACAAAC
GACACGGTCATCCCGCTGACTGCTGCAACAAAGCAAGCCTCGCCCGTCCC
TCGACAGCAGTTGGTGCTGCAGCTATGTTTGCACAGCATTATGCACACGT
AAAATCACACGGACTATTGAATTCTTGTGGATGAAGCTATTTATTTAGTC
CCATAGACACCTGCCACAGCAATGCACGACACATGTGTTCACTACGTACT
GCTGTACCCACCGTATGTTCTGGCGCCGGTATCGCCAGCCCCGCTCAACA
ATACTTCGTTCTCTTGGGGGGAGTGTGTGAACAACCTCACATGTACCCTT
TCGGCCAACTTGGTGACATGCAACATAAGCTAATGCCACCTGGCATCCGT
CTGTCCGTGTCACGACAGCCATAGTGCTATATTTCGTGGAGCCTCGATCG
CATGCGAACAGTGTACCAGGGTTGGGGGGTCGGTATTCAACGTAACGTAT
GTGCTGGTCGTCCATGTCCGCGTGCAGATACGTTTACATATTAAGAAAAA
GAATCTCGAGATGTTCGCACATAAGAACGATTAATTCTCAACGCAATATT
TCCATGGAGTATTCGTTCTCTAGCTCCTGCTTCACGTAGTGCATCGCTGG
TCGTGTGCAAATTAAGTGTTCATGCATTGAGTATATTCTGCTCATCATGT
TCAGATGCGCGAAATGGTGCCGATGCTACCGTCGAAGGTAACCGCCGAAG
GTAACATGTTGCGTGAACTTCTCAATGTTTCCAACGCCGCCGTTGTAGCA
TACGGCGTGAGCTGTCCGTTCTCCCCCTAGCGGACAGCCTCTCACGCCAG
GGGACGATTTGGCGCCTCGCTTCGCTGGGTTTGCGATTTGGTGATTTTGT
ATGAAATCACGCGGGCTTATCTCTGCCGTGTGTCTGTATCTTGTGTGCAT
GTTTTTGATTGGTATCGACCGCGCTAAGCCGCTGACCAATAAAAAAGCCT
TCAGTCTTCGAACAGAACGTTAAAGACGTGAAAACCCTGCTGTTCTTTGT
GTGTTTATGTGTCTATTTTTGTCAGATGCGTGGGGGACAGCGTGCCAGTC
GGCGAGGACACGACCTTCACTTTCAGGGCGGCGCCAGTAGAGTGAGTCAC
GCAACAGCGTCAAGTCCGTCGAAACAGCGGTCTGCTGATCACCTTGCTGG
TTCCTTCCCCCCTGTGTTGTAGACATCATCTTTGTTGTAATGTGCTGGCG
TTTATGTGCGTGAGTGCCCCTTCAGTTCTTCTCAAGCGCTGTTCGAGACC
TACACCCCGCTACTGACCCGCTTGTTTTTGTCTCGAGTCTTCCAGCAATG
TTTACTTTCGACCGCGTGTGTTGTTTTTTTTTCCAACCCCTGCGGCGGAA
CTCAAAAATTGTTGTCTTTTGTTCGTTTGCATCTCCGCGAGAAAGGGATA
AAAGTAACACGCTAGCCGATTTGCTCCATGTCCCGGTGGTCTCAATGTTA
AAATTTCTGCCGTTTGGGAAATCTTCTTTCCTGTATGTGCAGCGGCCCTT
TCTTAGACAAGGTCAAGGTGATCTTGGAGCACCCCAACGGAGAAGAGCCG
TTCATCGCGGAGTTGACGGAGGAGAAACAGTTCCATCGTGTGGATAAGGG
CGAAGGGGGGGGCACCTACAGGGTTTGTTTCCACAACTTGAAAACCAAGG
GGAGAAGTACAAGGGTTGAGGTGAGGGGGGCGGGGGAGACAGACAGACAG
AGAGCGAGGGATGGGCGCTTCCGCACGGCCACTTACTGGCCGTTTCGGCG
TTTTGAACGCTTAGTCTTGATCTTGACTTGTAGCGGCTTGTGGTGATTGG
CCGTGACGTCGTAGACGACGTTCGTTGCCTGTTAAGGTGGTGACGAAATT
CAAGGTTGTCCCATCCCCTTCAACTGCTGCGGTTATGTTCCGAACGGTTT
GTTTTTTCTGCGTATTTTGTACAAAATTTTCTTAATAATTCATCTTCACT
TTTGACCGCGATTACTCACTTTCAGCTGGTGGAGACGACCTCGGCGGTGA
CAAAAGTTGCTTCTCAGGTCGCTAAACACCTGCAGCCAGCGGACGAGCTC
CTTAAGCATGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6729:5464..7878+

>mRNA_Ecto-sp13_S_contig6729.17631.1 ID=mRNA_Ecto-sp13_S_contig6729.17631.1|Name=mRNA_Ecto-sp13_S_contig6729.17631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6729:5464..7878+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACTCTTCCGTTACGCCCTGGCGTTGGTCGGACTATCCATTGCGTA
CGGGATAGAGCCCACTCCTATCCTGATTGACGTATTACCGGGAGAGACAA
GATGCGTGGGGGACAGCGTGCCAGTCGGCGAGGACACGACCTTCACTTTC
AGGGCGGCGCCAGTAGACGGCCCTTTCTTAGACAAGGTCAAGGTGATCTT
GGAGCACCCCAACGGAGAAGAGCCGTTCATCGCGGAGTTGACGGAGGAGA
AACAGTTCCATCGTGTGGATAAGGGCGAAGGGGGGGGCACCTACAGGGTT
TGTTTCCACAACTTGAAAACCAAGGGGAGAAGTACAAGGGTTGAGCTGGT
GGAGACGACCTCGGCGGTGACAAAAGTTGCTTCTCAGGTCGCTAAACACC
TGCAGCCAGCGGACGAGCTCCTTAAGCATGCCAAG
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