mRNA_Ecto-sp13_S_contig6727.17628.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6727.17628.1
Unique NamemRNA_Ecto-sp13_S_contig6727.17628.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.060e-63
Identity = 126/177 (71.19%), Postives = 139/177 (78.53%), Query Frame = 3 
Query:  972 GTIRALLEVGANANARDKLDETPLHIACMIPSVAAVELLLLWGVDEKLMDDDGDTPADVIEAPEENDNNEEEIEADNQRIRQMLSRALPERSWRRRGWLVLRRSCPTRVQIANGSSSGSLIGSSKGCSAKVARVSGEGSGGGDEEAEDQMMVDWRDLVGRIVGLEAHGLFRLVVGFL 1502
            GTI ALLE GAN NAR   D+TPLHIAC     + VELLL WG DEKL ++DGDTPADV+   E+ND ++EE EADNQRI +ML+RA  +RSWRRRGWLVL RSCPTRV IANGSSS S I    G SAKVARVSG+GS   DEE EDQMMVD RDLVGR+VGLEA GLFRLVVGFL
Sbjct:  335 GTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.970e-55
Identity = 119/180 (66.11%), Postives = 133/180 (73.89%), Query Frame = 3 
Query:  972 GTIRALLEVGANANARDKLDETPLHIACMIPSVAAVELLLLWGVDEKLMDDDGDTPADVIEAPEENDNNEEEIEADNQRIRQMLSRALPERSWRRRGWLVLRRSCPTRVQIANGSSSGSLIGSSK---GCSAKVARVSGEGSGGGDEEAEDQMMVDWRDLVGRIVGLEAHGLFRLVVGFL 1502
            GTIRALLE GA+ N RD  D TPLH AC   SVAAVELLL WG DEKL DD   TPAD+I    +  ++  +IEAD QRI QML+RA  +RSWRRR WLVL RSCPTRV+IAN + SGS +GSS    G S K+AR SGE SGGG+ E EDQMMVD R LV R+VGLEA GLFRLVVGFL
Sbjct:  334 GTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFL 513
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.900e-54
Identity = 113/178 (63.48%), Postives = 134/178 (75.28%), Query Frame = 3 
Query:  969 VGTIRALLEVGANANARDKLDETPLHIACMIPSVAAVELLLLWGVDEKLMDDDGDTPADVIEAPEENDNNEEEIEADNQRIRQMLSRALPERSWRRRGWLVLRRSCPTRVQIANGSSSGSLIGSSKGCSAKVARVSGEGSGGGDEEAEDQM-MVDWRDLVGRIVGLEAHGLFRLVVGF 1499
            +GTI ALLE GA+ +  D++D+TPLH AC   SV  VELLL  G DE+L +++GD PAD++ A   N   +EEIE DNQRIR+ML+RA  +RSWRRRG LVL RSCPTRVQIAN SSSGS IGSSKGC AKV+  S + SGG +EE  DQM MVDWR LV R++ LE  GLFRLVVGF
Sbjct:  201 IGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSGSSIGSSKGCFAKVSPASRKNSGGDNEETGDQMVMVDWRYLVCRLIELEVDGLFRLVVGF 378
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 5.330e-54
Identity = 113/177 (63.84%), Postives = 135/177 (76.27%), Query Frame = 3 
Query:  972 GTIRALLEVGANANARDKLDETPLHIACMIPSVAAVELLLLWGVDEKLMDDDGDTPADVIEAPEENDNNEEEIEADNQRIRQMLSRALPERSWRRRGWLVLRRSCPTRVQIANGSSSGSLIGSSKGCSAKVARVSGEGSGGGDEEAEDQMMVDWRDLVGRIVGLEAHGLFRLVVGFL 1502
            GTIRALLE GA+ ++R + D+TPLHIAC   SV+ VELLL WG DE+L ++ GD PADVI A ++ D ++EE +ADNQRI +ML+RA  +RSWRRRGWLVL R CPTRVQI NGSSS    GS  G SAKVA +SGE +G GDEE ED++M D RDLV  +VGLEA  LFRLVV FL
Sbjct:   98 GTIRALLE-GADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSS---RGSYNGNSAKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEADSLFRLVVAFL 270
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 9.840e-54
Identity = 114/181 (62.98%), Postives = 131/181 (72.38%), Query Frame = 3 
Query:  972 GTIRALLEVGANANARDKLDETPLHIACMIPSVAAVELLLLWGVDEKLMDDDGDTPADVIEAPEENDNNEEEIEADNQRIRQMLSRALPERSWRRRGWLVLRRSCPTRVQIANGSSSGSLIGSS----KGCSAKVARVSGEGSGGGDEEAEDQMMVDWRDLVGRIVGLEAHGLFRLVVGFL 1502
            GTIRALLE GAN NAR   D+TPLH+AC   S   VELLL WG D+KL  + G TPA V+ A +++D ++EE+EADNQRIR+ML+R    RSWRRRGWLVL RSCPTRVQIANGSS             G SAKVA+VSGE S   DEE  D MMVD RDLVGR++ LEA G+FRLVVGFL
Sbjct:  296 GTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNGNSAKVAKVSGESSSRDDEETADDMMVDLRDLVGRLIALEADGVFRLVVGFL 476
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.280e-53
Identity = 111/178 (62.36%), Postives = 132/178 (74.16%), Query Frame = 3 
Query:  969 VGTIRALLEVGANANARDKLDETPLHIACMIPSVAAVELLLLWGVDEKLMDDDGDTPADVIEAPEENDNNEEEIEADNQRIRQMLSRALPERSWRRRGWLVLRRSCPTRVQIANGSSSGSLIGSSKGCSAKVARVSGEGSGGGDEEAEDQMMVDWRDLVGRIVGLEAHGLFRLVVGFL 1502
            + T  ALLE GAN NA      TPLH+ACM  +VAAVELLL WG DE   +D+GD PADVI   +  D N+E+++AD++RIR+ML+RA  +RSWRRRGWLVL RSCPTRVQIAN    GS +  +  C AKVARVSGE  GG +EEAE+QM VDW  LVG ++GLEA GLFRLVVGFL
Sbjct:  331 IDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIAN---KGSRVNRNS-CPAKVARVSGEDLGGDEEEAENQMTVDWGGLVGSLLGLEADGLFRLVVGFL 504
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 5.210e-53
Identity = 112/192 (58.33%), Postives = 131/192 (68.23%), Query Frame = 3 
Query:  969 VGTIRALLEVGANANARDKLDETPLHIACMIPSVAAVELLLLWGVDEKLMDDDGDTPA------------DVIEAPEENDNNEEEIEADNQRIRQMLSRALPERSWRRRGWLVLRRSCPTRVQIANGSSSGSLIGSSKG--CSAKVARVSGEGSGGGDEEAEDQMMVDWRDLVGRIVGLEAHGLFRLVVGFL 1502
            +G IRALLE GAN NARD  D+TPLH+AC   SV  VE LL WG DEKL D DG+TPA            DV +AP EN   +E IEAD  RIRQML+RA  +RSW RR WLVL RSCPT+VQI+N SSS ++   S G   SA++  V+ +  GG D+E EDQ  V+WRDLV R+VGLEA  LFRLVVGFL
Sbjct:   76 IGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNISSGSSGDGLSAEMVSVNCKDLGGDDKETEDQKTVNWRDLVVRLVGLEADVLFRLVVGFL 267
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.340e-48
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 1 
Query:    4 KREEDRSRVDGFEVEMFKLVQREATLEQ*KQWLRTPLEHAAAKGNLDLFTRRMDAGANGEAGWRGCHGRTLLGAAACGKK-DKVIRALLTR-AKSDVNVLFGA*HESALHVAAARGAEEATTALVMAGARPNV 396
            KR+  RSR+DGFE+E+FKLV+ EA  EQ KQW R PLEHA A+GNLDLFTR MDAGA+GEAGWRGCHGRTLLGAAACG   DK++RALL   A+ DVNV FG  +ES LHV+AARGAE + TAL++AGA PN+
Sbjct:    5 KRKGHRSRLDGFEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVNVRFGNTNESTLHVSAARGAEASCTALMIAGADPNL 137
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.070e-48
Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 1 
Query:   16 DRSRVDGFEVEMFKLVQREATLEQ*KQWLRTPLEHAAAKGNLDLFTRRMDAGANGEAGWRG--CHGRTLLGAAACG-KKDKVIRALLTRAKSD-VNVLFGA*HESALHVAAARGAEEATTALVMAGARPNVVNVEEFAP 420
            DRSRVDGFE+E+FKLV+ EAT  Q KQWLRTPLEHAAAKGNLDLFTR MDAGA GE GWRG  CH RTLLGAAACG K DK+I ALL    +D VN +FG   ESALHV+AARGAEEA+ AL+ AGA P++ N E+ +P
Sbjct:    7 DRSRVDGFEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVNAVFGTERESALHVSAARGAEEASKALMAAGADPDLGNFEDESP 145
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BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 8.000e-44
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 1 
Query:    1 AKREEDRSRVDGFEVEMFKLVQREATLEQ*KQWLRTPLEHAAAKGNLDLFTRRMDAGANGEAGWRGC--HGRTLLGAAACGKK-DKVIRALLTRAKSD-VNVLFGA*HESALHVAAARGAEEATTALVMAGARPNVVNVEEFAP 420
            ++REEDRSRVDGFE+E+FKLV+ EAT +Q KQWLRTPLEHAAAKGNLDLFTR +DAGA GE GW+G     RTLLGAAACG K D +++ALL   +++ VN  FGA  ESALHV  ARGAE+A+ AL+MAGA PN+ NV+  +P
Sbjct:    4 SEREEDRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGAGGEPGWQGWGHRERTLLGAAACGNKSDVMVQALLEAGETEFVNTSFGATRESALHVTVARGAEDASKALMMAGADPNLGNVDGDSP 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6727.17628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN0_ECTSI4.060e-6371.19Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LD22_ECTSI1.970e-5566.11MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LTL5_ECTSI1.900e-5463.48MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5JXF0_9PHAE5.330e-5463.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L812_9PHAE9.840e-5462.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI1.280e-5362.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6K9_9PHAE5.210e-5358.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQE2_ECTSI1.340e-4869.92Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LQE9_ECTSI4.070e-4870.50Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7FZ92_ECTSI8.000e-4465.97Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6727contigEcto-sp13_S_contig6727:4894..6395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score86.3
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog2880.D8LQM9
Model size1502
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size630
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463925.1458442-UTR-Ecto-sp13_S_contig6727:4893..52841681463925.1458442-UTR-Ecto-sp13_S_contig6727:4893..5284Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6727 4894..5284 +
1681463925.1695693-UTR-Ecto-sp13_S_contig6727:5914..63951681463925.1695693-UTR-Ecto-sp13_S_contig6727:5914..6395Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6727 5915..6395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463925.1574304-CDS-Ecto-sp13_S_contig6727:5284..59141681463925.1574304-CDS-Ecto-sp13_S_contig6727:5284..5914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6727 5285..5914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6727.17628.1prot_Ecto-sp13_S_contig6727.17628.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6727 5285..5914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6727.17628.1

>prot_Ecto-sp13_S_contig6727.17628.1 ID=prot_Ecto-sp13_S_contig6727.17628.1|Name=mRNA_Ecto-sp13_S_contig6727.17628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MWLMLRSSLHIATEAGHDRVIDVLLLNGAQVNAKTNTGDTPLHLAASKGH
TLCISELLLGGADEDVIDHEGETPLFKAARNNHLGAVEKLLAAGADPGIL
SSSDVYPLEIAVRRGHATIMKVFLDEDSSNVDATNNLGWTALHHAASVGG
PARDSGDAVRVLLEAGADVNVKTAGNNHFTLLHVAASQRGAWGGHDPRPF
GGRGECQCA*
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mRNA from alignment at Ecto-sp13_S_contig6727:4894..6395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6727.17628.1 ID=mRNA_Ecto-sp13_S_contig6727.17628.1|Name=mRNA_Ecto-sp13_S_contig6727.17628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1502bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6727:4894..6395+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAAACGCGAAGAAGACCGCTCACGTGTGGACGGCTTTGAGGTCGAGAT
GTTCAAACTCGTCCAAAGGGAGGCGACCCTGGAGCAGTAGAAGCAGTGGC
TTCGAACACCTCTGGAACACGCCGCGGCCAAAGGAAACTTGGATCTCTTC
ACACGGCGGATGGACGCTGGTGCCAACGGTGAAGCAGGCTGGCGGGGATG
TCATGGCCGAACACTGCTGGGTGCGGCTGCATGTGGCAAGAAGGACAAGG
TGATACGGGCTCTGCTCACGCGGGCGAAGAGTGATGTAAACGTTCTCTTC
GGGGCTTAACACGAGTCCGCTCTCCACGTTGCGGCAGCGCGGGGAGCAGA
GGAGGCCACCACGGCGCTCGTGATGGCTGGGGCACGCCCGAATGTGGTTA
ATGTTGAGGAGTTCGCTCCATATTGCAACCGAGGCAGGTCACGACCGAGT
TATAGATGTCCTTCTTCTAAATGGGGCCCAAGTAAATGCGAAGACGAATA
CCGGCGACACTCCTCTCCACCTCGCTGCTTCCAAGGGCCATACGCTGTGC
ATCTCTGAGCTTTTGCTGGGCGGCGCAGACGAGGACGTGATCGATCACGA
AGGTGAAACGCCACTGTTCAAGGCGGCCAGAAACAACCACCTCGGAGCTG
TTGAAAAGCTGCTAGCTGCAGGTGCCGACCCCGGAATTCTCTCCTCCAGC
GACGTGTATCCACTCGAGATTGCTGTACGAAGAGGTCACGCGACCATTAT
GAAAGTCTTCCTTGACGAAGACAGTAGTAACGTCGACGCCACCAATAACC
TCGGTTGGACAGCCCTGCACCATGCTGCATCTGTTGGCGGACCTGCCCGT
GACAGCGGCGATGCTGTCCGTGTACTGTTAGAAGCTGGGGCTGATGTCAA
CGTGAAGACGGCCGGCAACAATCACTTCACGCTTCTCCATGTTGCCGCAA
GTCAACGGGGAGCATGGGGTGGGCACGATCCGCGCCCTTTTGGAGGTAGG
GGCGAATGCCAATGCGCGTGACAAACTCGATGAGACGCCGCTGCACATTG
CTTGCATGATTCCGAGTGTGGCGGCTGTGGAGCTCCTCCTGCTTTGGGGA
GTAGATGAGAAGCTGATGGACGACGATGGAGACACCCCTGCAGACGTGAT
AGAAGCTCCGGAAGAAAATGACAACAACGAAGAAGAAATCGAGGCTGACA
ACCAGCGCATTCGCCAAATGCTGTCACGCGCTCTACCCGAAAGGTCATGG
CGTCGCCGCGGCTGGCTCGTGCTACGCCGTTCCTGCCCCACCAGGGTGCA
GATCGCAAATGGTAGCAGCAGCGGCAGCCTTATAGGCAGCAGCAAGGGTT
GCTCAGCCAAGGTGGCGAGGGTCAGCGGCGAGGGTTCGGGTGGGGGTGAC
GAGGAGGCGGAAGACCAGATGATGGTCGACTGGAGGGATTTGGTGGGCAG
GATAGTCGGACTGGAGGCTCACGGCTTGTTCCGCTTGGTGGTGGGCTTCC
TG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6727:4894..6395+

>mRNA_Ecto-sp13_S_contig6727.17628.1 ID=mRNA_Ecto-sp13_S_contig6727.17628.1|Name=mRNA_Ecto-sp13_S_contig6727.17628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6727:4894..6395+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTAATGTTGAGGAGTTCGCTCCATATTGCAACCGAGGCAGGTCA
CGACCGAGTTATAGATGTCCTTCTTCTAAATGGGGCCCAAGTAAATGCGA
AGACGAATACCGGCGACACTCCTCTCCACCTCGCTGCTTCCAAGGGCCAT
ACGCTGTGCATCTCTGAGCTTTTGCTGGGCGGCGCAGACGAGGACGTGAT
CGATCACGAAGGTGAAACGCCACTGTTCAAGGCGGCCAGAAACAACCACC
TCGGAGCTGTTGAAAAGCTGCTAGCTGCAGGTGCCGACCCCGGAATTCTC
TCCTCCAGCGACGTGTATCCACTCGAGATTGCTGTACGAAGAGGTCACGC
GACCATTATGAAAGTCTTCCTTGACGAAGACAGTAGTAACGTCGACGCCA
CCAATAACCTCGGTTGGACAGCCCTGCACCATGCTGCATCTGTTGGCGGA
CCTGCCCGTGACAGCGGCGATGCTGTCCGTGTACTGTTAGAAGCTGGGGC
TGATGTCAACGTGAAGACGGCCGGCAACAATCACTTCACGCTTCTCCATG
TTGCCGCAAGTCAACGGGGAGCATGGGGTGGGCACGATCCGCGCCCTTTT
GGAGGTAGGGGCGAATGCCAATGCGCGTGA
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