mRNA_Ecto-sp13_S_contig6727.17627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6727.17627.1
Unique NamemRNA_Ecto-sp13_S_contig6727.17627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 7.240e-95
Identity = 168/187 (89.84%), Postives = 172/187 (91.98%), Query Frame = 3 
Query:   75 ATPEQWKQWLRTPLEHAAAKGNLDLFTRLMDTGAGGEPDQRGWGCRERTLLGAAACGTKSDKMIRALLL*AGSTDDVNAVFGTHRESALHVSAARGAEEVSKALMAAGADPDLGNFEDESPLHLAAEAGHDRVVRILLERANVNATSDFQVTXXXXXXXXXXXLCVSELLMCGANKDVYDVQGETPL 635
            AT  QWKQWLRTPLEHAAAKGNLDLFTRLMD GAGGEP  RGWGC ERTLLGAAACGTKSDKMI ALL  AG TDDVNAVFGT RESALHVSAARGAEE SKALMAAGADPDLGNFEDESPLHLAAEAGHDRVVR+LLERANV+ATSDFQVTXXXXXXXXXX LCVSELL+ GANKDV D+QGETPL
Sbjct:   26 ATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLE-AGVTDDVNAVFGTERESALHVSAARGAEEASKALMAAGADPDLGNFEDESPLHLAAEAGHDRVVRVLLERANVDATSDFQVTXXXXXXXXXXTLCVSELLIGGANKDVLDLQGETPL 211
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 2.960e-77
Identity = 146/232 (62.93%), Postives = 174/232 (75.00%), Query Frame = 1 
Query:  841 GYTALHFAASADGPVQDNGDAVRVLLEAGADVNAKTTS-GCFTPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEIEADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQIANKRSSSVISSSNGCSAKVARVSGQDLGGHNEEKEDKTTVDFREVVGRLVGLEPNVLFRLVVCFL 1533
            G  ALH+AAS  GPV D GDAVRVLL AG DVN  TT+  CFTPLH+AV+ RIAS GT+RALLEG A+VD R  +++ PLHIAC+ +SV+ VELLLRWGADE+LTN   + PA+VI   ++ D +DEE +AD+QRIC+ML  APADRSWRRR WLVLSR CPTRVQI N  SS    S NG SAKVA +SG+D G  +EE ED+   D R++V  LVGLE + LFRLVV FL
Sbjct:   42 GLAALHYAASVVGPVHDKGDAVRVLLGAGVDVNVNTTTDSCFTPLHVAVDGRIASDGTIRALLEG-ADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSR--GSYNGNSAKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEADSLFRLVVAFL 270
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.190e-76
Identity = 154/239 (64.44%), Postives = 174/239 (72.80%), Query Frame = 1 
Query:  829 DTQN--GYTALHFAASADGPVQDNGDAVRVLLEAGADVNAK-TTSGCFTPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEIEADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQIAN-KRSSSVISSSNGCSAKVARVSGQDLGGHNEEKEDKTTVDFREVVGRLVGLEPNVLFRLVVCFL 1533
            DT N  G+ ALH+ AS D  V+D GDAVRVLL AGADVN K T   C TPLHLAV R + S GT+ ALLEGGAN++ R   +  PLHIAC R   + VELLLRWGADEKL N D +TPA+V+G  E+ND +DEE EAD+QRI +ML  APADRSWRRR WLVLSR CPTRV IAN   SSS IS  NG SAKVARVSGQ     +EE ED+  VD R++VGRLVGLE   LFRLVV FL
Sbjct:  273 DTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 3.980e-76
Identity = 151/249 (60.64%), Postives = 176/249 (70.68%), Query Frame = 1 
Query:  841 GYTALHFAA-SADGPVQDNGDAVRVLLEAGADVNAKTTS--GCFTPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEE------------NDSNDEEIEADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQIANKRSSSVISSSN---GCSAKVARVSGQDLGGHNEEKEDKTTVDFREVVGRLVGLEPNVLFRLVVCFL 1533
            GYTALH      + PV DNGD VRVLLEAGADV+AKTT    C TPLH AV RRIA +G +RALLEGGANV+ RD +++ PLH+AC RSSV  VE LL WGADEKLT+ D ETPA  I D EE            N   DE IEAD  RI QML  APADRSW RR WLVLSR CPT+VQI+N  SSS ISS +   G SA++  V+ +DLGG ++E ED+ TV++R++V RLVGLE +VLFRLVV FL
Sbjct:   19 GYTALHCCVCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNISSGSSGDGLSAEMVSVNCKDLGGDDKETEDQKTVNWRDLVVRLVGLEADVLFRLVVGFL 267
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.550e-72
Identity = 142/238 (59.66%), Postives = 173/238 (72.69%), Query Frame = 1 
Query:  826 TDTQNGYTALHFAASADGPVQDNGDAVRVLLEAGADVNAKTTSGC--FTPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEIEADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQIANKRSSSVISSSNGCSAKVARVSGQDLGGHNEEKEDKTTVDFREVVGRLVGLEPNVLFRLVVCFL 1533
            T    GYTA+H A +  GP+ DNG  VR+LLEAG  VNA+T      +TPLH AVERRIAS+ T  ALLEGGAN +   ++   PLH+AC  S+VAAVELLLRWGADE  +N + + PA+VIG ++  D NDE+++ADH+RI +ML  APADRSWRRR WLVLSR CPTRVQIANK S     + N C AKVARVSG+DLGG  EE E++ TVD+  +VG L+GLE + LFRLVV FL
Sbjct:  271 TGDDQGYTAIHCAVNRHGPL-DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGSRV---NRNSCPAKVARVSGEDLGGDEEEAENQMTVDWGGLVGSLLGLEADGLFRLVVGFL 504
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 2.080e-71
Identity = 142/237 (59.92%), Postives = 171/237 (72.15%), Query Frame = 1 
Query:  841 GYTALHFAASADGPVQDNGDAVRVLLEAGADVNAKTTSG-CFTPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEIEADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQIANKRSSSVISSS-----NGCSAKVARVSGQDLGGHNEEKEDKTTVDFREVVGRLVGLEPNVLFRLVVCFL 1533
            G+ ALH+AAS DGPV+DNGDAVRVLL AGADV+AK T   C T L+LAV RRIAS GT+RALLEGGAN++ R   ++ PLH+AC RSS   VELLLRWGAD+KLT    +TPA V+   +++D +DEE+EAD+QRI +ML   PA RSWRRR WLVLSR CPTRVQIAN  S            NG SAKVA+VSG+     +EE  D   VD R++VGRL+ LE + +FRLVV FL
Sbjct:  240 GWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNGNSAKVAKVSGESSSRDDEETADDMMVDLRDLVGRLIALEADGVFRLVVGFL 476
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 3.020e-70
Identity = 150/237 (63.29%), Postives = 175/237 (73.84%), Query Frame = 1 
Query:  841 GYTALHFAASADGPVQDNGDAVRVLLEAGADVNAKTTSGCF--TPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEIEADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQIANK-RSSSVI---SSSNGCSAKVARVSGQDLGGHNEEKEDKTTVDFREVVGRLVGLEPNVLFRLVVCFL 1533
            GYTALH AA  +   +D GDAVRVLL AGADV+AKTT       PLH+AV  R+ S GT+RALLEGGA+V+VRD  ++ PLH AC  SSVAAVELLLRWGADEKLT+  + TPA++IG   +  S+  +IEAD QRI QML  APADRSWRRRSWLVLSR CPTRV+IAN+ RS S +   SSSNG S K+AR SG+D GG   E ED+  VD R +V RLVGLE + LFRLVV FL
Sbjct:  277 GYTALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFL 513
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 3.150e-66
Identity = 150/257 (58.37%), Postives = 170/257 (66.15%), Query Frame = 3 
Query:   75 ATPEQWKQWLRTPLEHAAAKGNLDLFTRLMDTGAGGEPDQRGWGCRERTLLGAAACGTKSDKMIRALLL*AGSTDDVNAVFGTHRESALHVSAARGAEEVSKALMAAGADPDLGNFEDESPLHLAAEAGHDRVVRILLERANVNATSD---FQVTXXXXXXXXXXXLCVSELLMCGANKDVYDVQGETPLLKAVRNSHLGVVERLLAAGATRVVRSRNNQDSPLEIAGRRGHATMVKAFLDVDSSSAVDATNENGYT 836
            AT +QWKQWLRTPLEHAAAKGNLDLFTRL+D GAGGEP  +GWG RERTLLGAAACG KSD M++ALL  AG T+ VN  FG  RESALHV+ ARGAE+ SKALM AGADP+LGN + +SPLHLAAEAGH RV+ ILL R    +      F  TXXXXXXXXXXXLC+SELLM GA+KDV D +GE                                         R G+A M+KAFLD DS   VDAT+  G+T
Sbjct:   28 ATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGAGGEPGWQGWGHRERTLLGAAACGNKSDVMVQALLE-AGETEFVNTSFGATRESALHVTVARGAEDASKALMMAGADPNLGNVDGDSPLHLAAEAGHHRVIGILLLRKEAQSADPMNLFLETXXXXXXXXXXXLCISELLMGGADKDVTDGKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSR-GNAAMLKAFLDKDSRE-VDATDGRGWT 281
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 3.490e-58
Identity = 124/206 (60.19%), Postives = 154/206 (74.76%), Query Frame = 1 
Query:  925 GADVNAKTT-SGCFTPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEIEADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQIANKRSS-SVISSSNGCSAKVARVSGQDLGGHNEEKEDKTT-VDFREVVGRLVGLEPNVLFRLVVCFL 1533
            GADV+A+ T S C TPLH+AV+RR+AS+GT+ ALLEGGA++ V DE +  PLH AC+RSSV  VELLLR GADE+LTN + + PA+++G    N + DEEIE D+QRI +ML  APADRSWRRR  LVLSR CPTRVQIAN+ SS S I SS GC AKV+  S ++ GG NEE  D+   VD+R +V RL+ LE + LFRLVV F+
Sbjct:  174 GADVDAEATGSDCSTPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSGSSIGSSKGCFAKVSPASRKNSGGDNEETGDQMVMVDWRYLVCRLIELEVDGLFRLVVGFV 379
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BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 8.680e-58
Identity = 110/168 (65.48%), Postives = 129/168 (76.79%), Query Frame = 1 
Query:  841 GYTALHFAASADGPVQDNGDAVRVLLEAGADVN-AKTTSGCFTPLHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVELLLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEI-EADHQRICQMLDSAPADRSWRRRSWLVLSRCCPTRVQI 1338
            G+ ALH+AA  DGPV+DNGDAVRVLL AGADVN       CFTPLH+AV  R  S GT+RALLEGG+N+  R   ++ PLHIAC+ +SV  VELLLRWGADEKLTN   +TPA+VI    +ND +DEE  EAD+QRI +ML+ APADRSWRRR WLVLSR CPTRV+I
Sbjct:  117 GWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCPTRVEI 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6727.17627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE9_ECTSI7.240e-9589.84Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
A0A6H5JXF0_9PHAE2.960e-7762.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI1.190e-7664.44Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5K6K9_9PHAE3.980e-7660.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI1.550e-7259.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L812_9PHAE2.080e-7159.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI3.020e-7063.29MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D7FZ92_ECTSI3.150e-6658.37Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
D8LTL5_ECTSI3.490e-5860.19MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LQI9_ECTSI8.680e-5865.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6727contigEcto-sp13_S_contig6727:1419..4382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score269.6
Seed ortholog evalue1.4e-69
Seed eggNOG ortholog2880.D8LQN0
Model size2199
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size717
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463925.0482547-UTR-Ecto-sp13_S_contig6727:1418..20801681463925.0482547-UTR-Ecto-sp13_S_contig6727:1418..2080Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6727 1419..2080 -
1681463925.081418-UTR-Ecto-sp13_S_contig6727:2845..28461681463925.081418-UTR-Ecto-sp13_S_contig6727:2845..2846Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6727 2846..2846 -
1681463925.1152573-UTR-Ecto-sp13_S_contig6727:3563..43821681463925.1152573-UTR-Ecto-sp13_S_contig6727:3563..4382Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6727 3564..4382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463925.1034064-CDS-Ecto-sp13_S_contig6727:2846..35631681463925.1034064-CDS-Ecto-sp13_S_contig6727:2846..3563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6727 2847..3563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6727.17627.1prot_Ecto-sp13_S_contig6727.17627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6727 2847..3563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6727.17627.1

>prot_Ecto-sp13_S_contig6727.17627.1 ID=prot_Ecto-sp13_S_contig6727.17627.1|Name=mRNA_Ecto-sp13_S_contig6727.17627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
MRTDTQNGYTALHFAASADGPVQDNGDAVRVLLEAGADVNAKTTSGCFTP
LHLAVERRIASMGTMRALLEGGANVDVRDEYEKPPLHIACERSSVAAVEL
LLRWGADEKLTNRDEETPAEVIGDWEENDSNDEEIEADHQRICQMLDSAP
ADRSWRRRSWLVLSRCCPTRVQIANKRSSSVISSSNGCSAKVARVSGQDL
GGHNEEKEDKTTVDFREVVGRLVGLEPNVLFRLVVCFL*
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mRNA from alignment at Ecto-sp13_S_contig6727:1419..4382-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6727.17627.1 ID=mRNA_Ecto-sp13_S_contig6727.17627.1|Name=mRNA_Ecto-sp13_S_contig6727.17627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2964bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6727:1419..4382- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGCTTCGAAAGGAGACCGCTCACGTGTGGACGGCTTCGAGATTGA
GATATTCAAACTCGTCAAGCAGGAGCGACTCCGGAGCAGTGGAAGCAGTG
GCTTCGAACACCTCTGGAGCATGCCGCGGCGAAAGGAAACTTGGATCTCT
TCACACGGCTGATGGACACTGGTGCCGGCGGAGAACCAGATCAGCGAGGT
TGGGGTTGCCGTGAACGGACGCTGCTGGGTGCGGCTGCTTGCGGCACGAA
AAGTGACAAGATGATCCGGGCTTTACTCTTGTAGGCTGGGTCGACGGATG
ATGTGAATGCCGTCTTTGGGACTCATCGCGAGTCCGCTCTTCATGTTTCG
GCAGCGCGGGGAGCAGAGGAGGTCTCCAAGGCGCTCATGGCCGCCGGTGC
AGACCCGGATCTGGGTAATTTTGAAGACGAGAGTCCGCTCCACCTCGCTG
CCGAAGCCGGGCACGACCGAGTTGTACGTATTCTTTTGGAACGGGCCAAC
GTGAACGCGACGAGCGATTTCCAGGTGACTCCTCTCCACCTCGCCGCTGT
CATGGGCCATACGCTGTGCGTCTCTGAGCTTTTGATGTGCGGTGCAAACA
AAGACGTTTACGATGTTCAAGGTGAAACGCCACTGTTGAAGGCGGTCAGA
AACAGCCATCTCGGGGTTGTCGAAAGGCTGCTAGCTGCCGGTGCCACCCG
CGTCGTGCGTTCCAGGAACAACCAGGATTCTCCACTCGAGATTGCTGGAA
GAAGAGGTCACGCGACCATGGTGAAAGCCTTCCTTGACGTAGACAGCAGT
AGTGCAGTCGACGCCACGAATGAGAACGGATACACAGAACGGATACACAG
CCCTACACTTTGCTGCATCTGCTGACGGGCCTGTCCAAGACAACGGTGAT
GCTGTCCGTGTACTTTTGGAAGCCGGTGCTGATGTCAACGCGAAGACCAC
CAGCGGTTGCTTCACGCCTCTCCATCTTGCCGTAGAGCGAAGGATAGCAT
CGATGGGCACGATGCGCGCCCTGTTGGAGGGAGGGGCCAACGTCGATGTG
CGTGACGAATACGAGAAGCCGCCACTGCACATAGCTTGCGAGAGGTCAAG
TGTGGCGGCTGTGGAGCTCCTGCTACGTTGGGGAGCAGATGAGAAGCTCA
CGAACCGAGACGAAGAAACCCCCGCAGAAGTAATAGGAGACTGGGAAGAG
AACGACAGCAACGACGAAGAAATTGAGGCCGACCACCAGCGCATTTGCCA
AATGCTGGACAGCGCTCCAGCCGATAGGTCATGGCGTCGCCGCAGCTGGC
TGGTGCTGAGCCGTTGCTGCCCGACCAGGGTGCAGATCGCAAACAAACGT
AGCAGCAGTGTCATCAGCAGCAGCAACGGTTGCTCCGCCAAGGTGGCGAG
GGTCAGCGGCCAGGATTTGGGCGGGCATAATGAGGAGAAAGAAGACAAGA
CGACTGTCGACTTTAGGGAGGTGGTGGGCAGGCTAGTCGGACTGGAGCCT
AACGTCTTGTTCCGCTTGGTGGTATGCTTCCTGTGAGGTGCGAGGGAGGA
GATACTTTGCCGTAGGGTTGATGATAGCTTCGTTCCCATCGAAGCGAAAA
TGGACGACGAGTAATCCCGCTCACAAACAACCACAAAAAGTATTGAAATT
GATTTATCTCGGTTGCTTCGCACCACCACTGCCGTGGTCGTGGTCTTGAC
ATGTTTTGGTCGATTTCACCCGATGTTTTCGTTTGGTTTTGCTTCAGACA
TTATGCACACGCTGTGTAGCTTTTCGCGCAGCAGATGATGTAGAATTCAA
CAGTTGCCATGTGCTGGACACAATCGTGCGGGGGTGCGAAACGAACGAGC
ATTTTGAACAGTAGCAGCCGAGCACAAATTTCCTTTTTATTTCTATGACG
GCAGATGTTTCATCTGTTGCCTGTGACGTGGGTGCGAGAGTTGTTCGGTT
TTGGAATTGCCACGGTCTGCTCCTGACTTTGGCCAATAACCTGAATGCTG
CGATTGGTTTCAATAATGAGTTTATGCCCCCGTGAGTCCGCCATTCCGTT
TTGAAGTCGGAGGATTCGCCAAGTCTACGTCCCTCACAAGCCTGTTGATC
TCTCTGCCGATGGCACCACAGGTCGCTTGGCGATATTTCCATGGCTGTTA
CAATGTACTGAAATGCTTAGTTCTGTCCACCTTTACGAGGCTGATCGTGT
CCGTCGGAGTACACCTGCCATGGTAGTTTGACGTCGCACTTTTTTCTCTG
GTGCTCTTCTGGACCGCCGTTCTTTCCTGGTGACTGCCGCCGCTATGTTA
AGGTTTCAAGAGCAGGAGTGCCCTGGTGCAATTTCTTCAAGCTCCCGATG
CAGCCAGCGCCATTTTCTGTCTTCGGTGGCGCCTGCGCATCCCTTTCCAT
GGAGCAGATACCAGCTGGACGGGAATTAGACGCAACAGGGTCTGGACCAT
TGGTAGAGCTGAACCCCTGAAGCTTGGTAGTGTTTGTGAGAGTGTCAGGT
GTATCCATCCAACGGTATTTTGTTTAGACCCTGTTTTTCCCCGATAAGTG
TAGGTACGTTGGCACGAGTACACGCCAAGCCTTCCTGCCTTCTGCTTCGC
TAGGCGTTCGCCTTGCTGGCTTCTCTTCGTCGATTTCGTCGATTTCCTGT
TGTTGTCGGGTTATTCGCCATTCCTACTGCTATTCGGTAAGGGTCAGTCG
AGTTAGATTGAATGTCTCTCATAATGCTAGTGCCCAACGAGATGTTCCAC
GAGCACGGGGTACGTGTACAGCGATAGTTGCGACAAGGTCGTCGCCCGAA
TCTCTGAGGCTTGATTTCGTTCGCTGTGCTGTATGTACTCTACGTACCCA
AGGACGGCGTTCGTTGAGCGATGACGACCATCAGTCCGGTGCTTCGTTTT
GAGACATGCATACCTGTTTACCGTCCGCTCTAAGGAGACCTTTCTGTTTC
CTACGCTCAATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6727:1419..4382-

>mRNA_Ecto-sp13_S_contig6727.17627.1 ID=mRNA_Ecto-sp13_S_contig6727.17627.1|Name=mRNA_Ecto-sp13_S_contig6727.17627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6727:1419..4382- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAACGGATACACAGAACGGATACACAGCCCTACACTTTGCTGCATC
TGCTGACGGGCCTGTCCAAGACAACGGTGATGCTGTCCGTGTACTTTTGG
AAGCCGGTGCTGATGTCAACGCGAAGACCACCAGCGGTTGCTTCACGCCT
CTCCATCTTGCCGTAGAGCGAAGGATAGCATCGATGGGCACGATGCGCGC
CCTGTTGGAGGGAGGGGCCAACGTCGATGTGCGTGACGAATACGAGAAGC
CGCCACTGCACATAGCTTGCGAGAGGTCAAGTGTGGCGGCTGTGGAGCTC
CTGCTACGTTGGGGAGCAGATGAGAAGCTCACGAACCGAGACGAAGAAAC
CCCCGCAGAAGTAATAGGAGACTGGGAAGAGAACGACAGCAACGACGAAG
AAATTGAGGCCGACCACCAGCGCATTTGCCAAATGCTGGACAGCGCTCCA
GCCGATAGGTCATGGCGTCGCCGCAGCTGGCTGGTGCTGAGCCGTTGCTG
CCCGACCAGGGTGCAGATCGCAAACAAACGTAGCAGCAGTGTCATCAGCA
GCAGCAACGGTTGCTCCGCCAAGGTGGCGAGGGTCAGCGGCCAGGATTTG
GGCGGGCATAATGAGGAGAAAGAAGACAAGACGACTGTCGACTTTAGGGA
GGTGGTGGGCAGGCTAGTCGGACTGGAGCCTAACGTCTTGTTCCGCTTGG
TGGTATGCTTCCTGTGA
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