prot_Ecto-sp13_S_contig12076.1762.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12076.1762.1
Unique Nameprot_Ecto-sp13_S_contig12076.1762.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length90
Homology
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.250e-52
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
Query:    1 MKLFAVAGAMVVLFCQLASGFMIAPSAFAGSSVVSKSSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWE 90
            MKLFAVAGAM VLFCQLASGFMIAPSAFAGSSVVSKSSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWE
Sbjct:    1 MKLFAVAGAMAVLFCQLASGFMIAPSAFAGSSVVSKSSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWE 90          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A7S2REE2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REE2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.570e-15
Identity = 43/68 (63.24%), Postives = 49/68 (72.06%), Query Frame = 0
Query:   26 SAFAGSSVVSKSSATSP-----TSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMY 88
            SAF G+ + +  SA S       SSL MR R CDLLGKK NRKARVVTFSHKRIHKVQ +NLQW++ Y
Sbjct:    2 SAFTGTPLQTSRSAASRHSRSGASSLVMRERACDLLGKKANRKARVVTFSHKRIHKVQAVNLQWKRFY 69          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A7S2HHS0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HHS0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.190e-14
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query:   37 SSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRK 86
            S+A +  SS+ MRAR CDLLGKK NRKARVVTFSHKRIHKVQ +NL W++
Sbjct:   34 SNANNGASSMVMRARECDLLGKKANRKARVVTFSHKRIHKVQAVNLHWKR 83          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A7S3L8H6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8H6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.020e-14
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0
Query:   27 AFAGSSVVSKSSATSPTS----SLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWE 90
            AF G+ VVS  + T   S    S+ MRAR CDLLGKKPNR+ARVVTFSH+RI KVQ +NLQW++ + E
Sbjct:   19 AFMGAPVVSARAKTQAPSNGAGSMVMRARVCDLLGKKPNRQARVVTFSHRRIKKVQEVNLQWKRFFSE 86          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A1E7FR95_9STRA (Ribosomal_L28-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR95_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.180e-14
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 0
Query:   27 AFAGSSVVSKSSAT---SPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWE 90
            AF G+ VV + + +   S  SS++MRAR CDLLGK+PNR+ARVVTFSHKRI KVQH+NLQ ++ + E
Sbjct:    8 AFMGTPVVQRQAVSQQRSGASSMEMRARVCDLLGKEPNRQARVVTFSHKRIKKVQHVNLQSKRFFSE 74          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A7R9WXT9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WXT9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.450e-14
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0
Query:   27 AFAGSSVVSKSSATSP----TSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMY 88
            AF G+ + S + A +P     +S++MRAR CDLLGKKPNR+ARVVTFSH+RI KVQ +NLQW++ Y
Sbjct:   67 AFMGTPIRSAAPAFAPKQNGAASMEMRARVCDLLGKKPNRQARVVTFSHRRIKKVQAVNLQWKRFY 132          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A7R9W756_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W756_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.180e-14
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0
Query:   41 SPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMY 88
            S  SS+ MRAR CDLLGK+PNR+ARVVTFSHKR  KVQH+NLQW++ Y
Sbjct:   75 SGASSMVMRARVCDLLGKRPNRQARVVTFSHKRNKKVQHVNLQWKRYY 122          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A6U3T0T0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T0T0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.200e-14
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 0
Query:   13 LFCQLASGFMIAPSAFAGSSVVSK---SSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRK 86
            +   +ASG+     AF G+S+ +    S   +  SS+ MR R CDLLGKK NRKARVVTFSHKRIHKVQ +NLQW++
Sbjct:   61 IIAAVASGY-----AFTGTSLQTTPRVSRTQNGASSMMMRTRVCDLLGKKANRKARVVTFSHKRIHKVQEVNLQWKR 132          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A448ZBR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBR3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-13
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query:   41 SPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWE 90
            S  +S++MRAR CDLLGKK NRKARVVTFSHKRIHKVQ +NLQ ++ + E
Sbjct:   36 SGAASMEMRARECDLLGKKANRKARVVTFSHKRIHKVQEVNLQTKRFFSE 85          
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Match: A0A7S4KCK3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCK3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.290e-13
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 0
Query:   12 VLFCQLASGFMIAPSAFAGSSVVSKSSATSP---------TSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMY 88
            VL   L + F ++ SAF+    V K   TSP          SS+ MRAR CDLLGK+PNR+ARVVTFSHKR   VQH+NLQW++ Y
Sbjct:   36 VLAVVLLAVFAVSASAFS----VGKPLQTSPRQESRTRSGASSMVMRARVCDLLGKRPNRQARVVTFSHKRNKSVQHVNLQWKRYY 117          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12076.1762.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G312_ECTSI1.250e-5298.8950S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2REE2_9STRA2.570e-1563.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HHS0_9STRA2.190e-1472.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3L8H6_9STRA3.020e-1460.29Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7FR95_9STRA3.180e-1459.70Ribosomal_L28-domain-containing protein n=1 Tax=Fr... [more]
A0A7R9WXT9_9STRA4.450e-1459.09Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7R9W756_9STRA7.180e-1472.92Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U3T0T0_9STRA9.200e-1454.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448ZBR3_9STRA1.180e-1370.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4KCK3_9STRA1.290e-1352.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 51..89
e-value: 1.6E-5
score: 25.0
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 33..90
IPR037147Ribosomal protein L28/L24 superfamilyGENE3D2.30.170.40coord: 50..90
e-value: 2.8E-5
score: 26.0
NoneNo IPR availablePANTHERPTHR13528:SF8coord: 33..90
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..90
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.854
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 46..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12076contigEcto-sp13_S_contig12076:1..3822 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12076.1762.1mRNA_Ecto-sp13_S_contig12076.1762.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12076 1..3822 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12076.1762.1 ID=prot_Ecto-sp13_S_contig12076.1762.1|Name=mRNA_Ecto-sp13_S_contig12076.1762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MKLFAVAGAMVVLFCQLASGFMIAPSAFAGSSVVSKSSATSPTSSLQMRA
RNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026569Ribo_L28/L24
IPR037147Ribo_L28/L24_sf
IPR034704L28p-like