mRNA_Ecto-sp13_S_contig6723.17621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE) HSP 1 Score: 259 bits (662), Expect = 3.990e-75 Identity = 141/155 (90.97%), Postives = 147/155 (94.84%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCSWSSSSKEGPSDLETAVAGDSSGSGTAVNNHNRNMTVGASPQVRQVSQMP 465
QFVLLLILFVRPLLVRLEGSQSG+AMYR VVIKNITCTIAVVTAYAVT+VVVIAALIRQ+N+SNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCSWSSS EGPSDLETA+AG SSGSGTAVNNHNR MT GASPQV +VSQ P
Sbjct: 224 QFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCSWSSSPNEGPSDLETAMAGGSSGSGTAVNNHNRAMTGGASPQVPEVSQTP 378
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI) HSP 1 Score: 189 bits (480), Expect = 6.300e-50 Identity = 106/140 (75.71%), Postives = 116/140 (82.86%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCSWSSSSKEGPSDLETAVAGDSSGSGTAVNNHNRNM 420
QFVLLLILFVRPLLVRLEGSQSG+A+YRRVVIKNITCTIAVVTAYAVT+VVVIAAL+RQNN+SNT IALPLGF+SCWKACSLELC+W SSSKEGPSDLETA+ GDSSGSGTA NNHNR++
Sbjct: 221 QFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALLRQNNDSNT---------------------IALPLGFTSCWKACSLELCTWPSSSKEGPSDLETAMTGDSSGSGTAANNHNRDV 339
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: D7G2C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI) HSP 1 Score: 114 bits (286), Expect = 4.210e-25 Identity = 58/101 (57.43%), Postives = 79/101 (78.22%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACS 303
QF+LLL LFV+P+LVR+EG+QSG A+YRRVV++N+ CT +V +YA+T++VV+ AL+R++ ESN ++ D+ N TLCLTEI LPLGF SC KACS
Sbjct: 74 QFILLLGLFVQPMLVRVEGAQSGGAVYRRVVLRNVFCTAGIVISYAITTLVVVIALLRESVESNKSAQIRDVALAANSLGTLCLTEITLPLGFRSCMKACS 174
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.850e-20 Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCS 318
QF LLL +FV+PL++ +QSG A+YRR+V++N+ CTIA+ YAVT+V+V+ + S A+ AD+ P N FVTLCLTE++LPLGFSSC KA E S
Sbjct: 102 QFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSSCVKAIKAETSS 207
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE) HSP 1 Score: 100 bits (249), Expect = 4.440e-19 Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCS 318
QF LLL +FV+PL++ +QSG A+YRR+V++N+ CTIA+ YAVT+V+V+ + S A+ AD+ P N FVTLCLTEI+LPLGFSSC KA E S
Sbjct: 203 QFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSSCVKAIKAETSS 308
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: D8LN45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 5.770e-19 Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLELCS 318
QFVLLL +FV+PL++ QSG A+YRR+V++N+ CTI + YAVT+V+V+ + S A+ AD+ P N FVTLC+TE++LPLGFSSC K+ E S
Sbjct: 72 QFVLLLAMFVKPLMIPQGHIQSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSSCVKSIKAETSS 177
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: D8LN53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN53_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 1.230e-16 Identity = 43/87 (49.43%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEI 261
QFVLLL +F++P+L+ G+QSG A+YRRVV++NI CT+ + AY +T+VVV+ A + +++N A++ ITP +N VTLCLTE+
Sbjct: 14 QFVLLLAMFIKPMLLPQGGTQSGGAVYRRVVVRNIVCTVGIACAYVITTVVVVLAHVSTPSDTNKAAVLGHITPSINICVTLCLTEV 100
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.520e-14 Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLVNQFVTLCLTEI 261
Q+VLLL +F++P+LV +QSG A+YRRVVI+NI CTI + AY +T+VVV+ AL+ +++ A+ DI P +N VTLCLTE+
Sbjct: 157 QYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTDKAAAVGDIVPSINICVTLCLTEV 243
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: A0A6H5JQ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.060e-12 Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLF 207
Q+VLLLILFVRPL+VRLEG QSG A+YR VV++N++CT AVV +Y +T++V + AL+RQ+ T +F
Sbjct: 194 QYVLLLILFVRPLMVRLEGVQSGGAVYRSVVVRNVSCTAAVVVSYIITTIVTVIALLRQHPNDTTVCVF 262
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Match: D8LG97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.950e-12 Identity = 40/60 (66.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query: 1 QFVLLLILFVRPLLVRLEGSQSGDAMYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQN 180
Q+VLLLILFVRPL+VRLEG+QSG A+YR VVI+NI+CT+AVV +Y +T++V + AL+RQ+
Sbjct: 240 QYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALLRQH 299 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6723.17621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6723.17621.1 >prot_Ecto-sp13_S_contig6723.17621.1 ID=prot_Ecto-sp13_S_contig6723.17621.1|Name=mRNA_Ecto-sp13_S_contig6723.17621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp MYRRVVIKNITCTIAVVTAYAVTSVVVIAALIRQNNESNTASLFADITPLback to top mRNA from alignment at Ecto-sp13_S_contig6723:2982..6660- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6723.17621.1 ID=mRNA_Ecto-sp13_S_contig6723.17621.1|Name=mRNA_Ecto-sp13_S_contig6723.17621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3679bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6723:2982..6660- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6723:2982..6660- >mRNA_Ecto-sp13_S_contig6723.17621.1 ID=mRNA_Ecto-sp13_S_contig6723.17621.1|Name=mRNA_Ecto-sp13_S_contig6723.17621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6723:2982..6660- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |