mRNA_Ecto-sp13_S_contig6720.17619.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: D7FZB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI) HSP 1 Score: 281 bits (720), Expect = 1.140e-95 Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 1
Query: 4 ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPC+NCPWC FGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPG CGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQP+PW
Sbjct: 2 ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCKNCPWCTFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPW 126
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: D7FZB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI) HSP 1 Score: 240 bits (612), Expect = 5.210e-79 Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 1
Query: 4 ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
ACCLICV D+PVPGSKLD +Y NPN+FQIG+MEAPC+NCPW FGCLC CCAQFIVRKRALDGNL NY+CCQGY+PMCC G CGER CPCFCLC+ESF C SCAVSSSRMYLMDKF V P+PW
Sbjct: 2 ACCLICVKDDPVPGSKLDPFYGNPNQFQIGLMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPW 126
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: D7FZB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI) HSP 1 Score: 223 bits (567), Expect = 7.550e-72 Identity = 99/125 (79.20%), Postives = 106/125 (84.80%), Query Frame = 1
Query: 4 ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
ACCLICV D+PVPGSKLDAYY NPN+FQIGMMEAPC+ WCA+G LC+ CAQF VRKRAL G L +YVCCQGYFP C EPG CGER CPCFCLCMESF C SCAVSSSRMYLMDKF VQP+PW
Sbjct: 2 ACCLICVKDDPVPGSKLDAYYGNPNQFQIGMMEAPCKTFLWCAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFPTHCCEPGDCGERRCPCFCLCMESFLCPSCAVSSSRMYLMDKFEVQPDPW 126
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: A0A835YWZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA) HSP 1 Score: 190 bits (482), Expect = 3.120e-59 Identity = 83/126 (65.87%), Postives = 99/126 (78.57%), Query Frame = 1
Query: 4 ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFP-MCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
ACCLIC +DEPV GSKL+ +Y N +FQIGMMEAPC+ C +G LC CCAQ+ VRKRALDGNL NY+CCQGYFP CC +PG CGE+ P CLC+ESF C SCAVSSSRM++MDK+ + P+PW
Sbjct: 2 ACCLICFSDEPVRGSKLEQFYGNNQQFQIGMMEAPCKATLCCCYGSLCSCCAQYTVRKRALDGNLDNYICCQGYFPGCCCMKPGHCGEKSSPACCLCLESFCCLSCAVSSSRMFIMDKYRLLPDPW 127
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: A0A7S2UXW4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW4_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.500e-38 Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 7 CCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCL-CMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
CCL+C +D+P+ G K Y +NPN FQ+ + +A C P C G C CCAQ+ +RK+AL+ +++NY CCQGY+ CF+ G GE CP CLC+E++ C SCAVSS+RM +MD + + +PW
Sbjct: 3 CCLLCFSDDPIEGDK---YGQNPNTFQVSLKDAACAE-PACCIGTFFCPCCAQYYIRKKALNDDMSNYTCCQGYYDCACFKAGNLGESSCPELCLCLEAYCCESCAVSSTRMLVMDTYMLASDPW 123
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: A0A7S2UXX8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX8_9STRA) HSP 1 Score: 134 bits (337), Expect = 5.520e-37 Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 10 CLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMC-CAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
C IC +D P+ G K Y + N FQ+ M + PC+ P C G C CAQ++VRK+ALDG++ NY CCQGY+ CF+ G CGE CP CLC+E+ C SCAVSS+RM +MD + +Q +PW
Sbjct: 3 CCICFDDGPIEGDK---YGQFSNTFQLSMADVPCQQ-PACCLGAFFCCPCAQYMVRKKALDGDMTNYKCCQGYYDCLCFKAGHCGEESCPDVCLCLEAVFCNSCAVSSTRMLVMDTYFLQSDPW 122
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: A0A6V1R716_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R716_HETAK) HSP 1 Score: 133 bits (334), Expect = 1.480e-36 Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 1
Query: 4 ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNP 375
AC L C +DEP+ G D Y+ PN F IGM++AP C +GC+ CCA + +R++ALDG+L+NY CCQGY+ + G CGE CP CLC+E++ C+SC++S++RM++MD + +Q +P
Sbjct: 2 ACLLFCFSDEPIEG---DERYDRPNMFNIGMIDAPTREPLCCLYGCIFPCCAFYQLREKALDGDLSNYRCCQGYYDRGPCKSGSCGEEQCPALCLCIEAWWCSSCSISATRMFVMDNYFLQSDP 122
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: A0A7S2V0P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0P2_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.460e-36 Identity = 58/124 (46.77%), Postives = 80/124 (64.52%), Query Frame = 1
Query: 4 ACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNP 375
ACCL C +D+P+ G K Y N FQ+ M +A C+ C C C CAQ+I+R++AL+G+++NY CCQGY+ CF+ G CGE CP CLC E+ C SCAVSS+R +MD + +Q +P
Sbjct: 2 ACCLTCFSDDPIEGDKYGHY---SNTFQLSMKDATCQEPGCCLASCFCPPCAQYIIRQKALEGDMSNYRCCQGYYDEACFKSGSCGESSCPEVCLCFEATFCNSCAVSSTRRLVMDTYLLQSDP 122
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: A0A484EEY5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEY5_BRELC) HSP 1 Score: 129 bits (323), Expect = 3.620e-35 Identity = 59/125 (47.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 10 CLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFP--MCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
C++C D PV D NP FQ+GMM AP + C CLC CCAQ ++R++AL+ +++NY CCQGY + C G CGE CP FCLC+ESF C CAVS++RM +MD++ +QP+ W
Sbjct: 2 CILCSGD-PVED---DVRKNNPGSFQVGMMHAPGADPLCCMSACLCPCCAQIVIRRKALNYDMSNYTCCQGYMDGLVPCARSGQCGESSCPNFCLCLESFCCNGCAVSATRMLVMDRYRLQPDKW 122
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Match: A0A024G979_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G979_9STRA) HSP 1 Score: 128 bits (321), Expect = 7.250e-35 Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 10 CLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFP--MCCFEPGGCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPNPW 378
C++C + PV G D +N N+F +GMM APC + C C C CCAQ+I+R++ALD +++ YVC QGY + C G CGER CP CLC+ES+ C CAVS++RM +MD++ ++P+ W
Sbjct: 2 CILC-SGSPVDG---DVRGQNSNEFMVGMMSAPCSSPCCCLASCFCPCCAQYIIRRKALDNDMSKYVCFQGYLDGVIPCLRSGQCGERSCPHCCLCLESWLCNGCAVSATRMLVMDRYNLRPDKW 122 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6720.17619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6720.17619.1 >prot_Ecto-sp13_S_contig6720.17619.1 ID=prot_Ecto-sp13_S_contig6720.17619.1|Name=mRNA_Ecto-sp13_S_contig6720.17619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp QACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCENCPWCAFGCLCMback to top mRNA from alignment at Ecto-sp13_S_contig6720:5644..8028+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6720.17619.1 ID=mRNA_Ecto-sp13_S_contig6720.17619.1|Name=mRNA_Ecto-sp13_S_contig6720.17619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6720:5644..8028+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6720:5644..8028+ >mRNA_Ecto-sp13_S_contig6720.17619.1 ID=mRNA_Ecto-sp13_S_contig6720.17619.1|Name=mRNA_Ecto-sp13_S_contig6720.17619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6720:5644..8028+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |