mRNA_Ecto-sp13_S_contig672.17617.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: D8LK97_ECTSI (Divergent RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK97_ECTSI) HSP 1 Score: 857 bits (2213), Expect = 6.470e-310 Identity = 503/555 (90.63%), Postives = 518/555 (93.33%), Query Frame = 1
Query: 1 MGRSCCRRVLDALCPCFRRNRLGSSASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKVQHVVILPSXXXXXXXXXXXXXXXXXXDS------AAERPLQRLPSSARRGGRGGLGQGTTTRAWALRAAAPPHRRDLSRAKSFSPRGFVTPAGAAAAASQGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFQKVGASTLATTTAAEDKESVLACGRRSSGTSPERTVSAXXXXXXXXXXXXXXXXXXXXXTA-EESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRDSYP 1644
MGRSCCRRVLDALCPCFR+NRLGSS SVSGA+GEHDMSLNFILHGECGVGKTSLRNRWVDG+FTGDVAPTFGVDFNIKTLDLVQE+ ED G+Q REEEPAVA KT PSG RGKGGSTT +A CADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELR+YF+DPEHR+KLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAK GTNVREAFMFATTRAVGE+LAR RLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQK Q V++LP XXXXXXXXXXXXXXXXXX AAERPLQRLPSSARRGGRGGLGQGTT RAWALRAAAPPHRR LSRAKS SPRG T A AAAAASQGLQQRRPESPVA SGTGDAATSSLLERPELSPV+VER SEGAAF+K+GASTLATTTAAEDKESVLACGRRSSGTSPERTVS XXXXXXXXXXXXXXXXXXXXX EESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFR SYP
Sbjct: 1 MGRSCCRRVLDALCPCFRQNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGGDQTREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAERPLQRLPSSARRGGRGGLGQGTTARAWALRAAAPPHRRHLSRAKSPSPRGLAT-ASAAAAASQGLQQRRPESPVALSGTGDAATSSLLERPELSPVEVERRSEGAAFRKIGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTXXXXXXXXXXXXXXXXXXXXXXXXEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRGSYP 553
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A6H5KHP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP3_9PHAE) HSP 1 Score: 784 bits (2025), Expect = 1.800e-281 Identity = 453/529 (85.63%), Postives = 467/529 (88.28%), Query Frame = 1
Query: 1 MGRSCCRRVLDALCPCFRRNRLGSSASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKVQHVVILPSXXXXXXXXXXXXXXXXXXDSAA------ERPLQRLPSSARRGGRGGLGQGTTTRAWALRAAAPPHRRDLSRAKSFSPRGFVTPAGAAAAASQGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFQKVGASTLATTTAAEDKESVLACGRRSSGTSPERTVS-AXXXXXXXXXXXXXXXXXXXXXTAEESATKQLREASSFWL 1566
MGRSCCRR LDALCPCFRR+RLGSS SVSGA+GEHDMSLNFILHGECGVGKTSLRNRWVDG+FTGDVAPTFGVDFNIKTLDLVQE+ EDEG+QAREEE AVA KT PSG RGKGGST +A ADL+VKINVYDTSGKPGYR+VNSTYLLAFDAVLFVYDISSVSTLNELRQYFN+PEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAK GTNVREAFMFATTRAVGE+LAR RLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVF GLTGRRRYPQK Q V ILP+ XXXXXXXXXX ERPLQR SSARRGGRGGLGQGTT +AWALRAAAPPHR LSRAKS SPRG T AAAAA QGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAF+K GASTLATTTAAEDKESVLACGRRSSGTSPERTVS + XXXXXXXXXX AEESATKQLREASSFWL
Sbjct: 1 MGRSCCRRALDALCPCFRRHRLGSSTSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEETAVAGKTLPSGGRGKGGSTAKQAPHADLKVKINVYDTSGKPGYRDVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNNPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFTGLTGRRRYPQKAQPVGILPAAPPTAGNAXXXXXXXXXXXXXXXXXXXXERPLQRPSSSARRGGRGGLGQGTTAQAWALRAAAPPHRCHLSRAKSSSPRGLTT---AAAAAFQGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFRKGGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTSGGSHGDVSQGAXXXXXXXXXXXAEESATKQLREASSFWL 525
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A7S3F9C0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F9C0_9VIRI) HSP 1 Score: 104 bits (260), Expect = 3.520e-22 Identity = 65/209 (31.10%), Postives = 102/209 (48.80%), Query Frame = 1
Query: 100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
E+D +L G+ GVGK+ L R+ D +T T GVDF I+T+DL G T +K+ ++DT+G+ +R + S+Y ++ VYD++ + + N ++Q+ N+ + + K LLVGNK D L+ ++QV +QT + A E G+PF+E SAKN TNV +AFM
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDL-------------------------------DGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDMDSFNNVKQWLNEIDRYASESVNK------LLVGNKSD--LTAKKQVDTQTAKAFADEIGIPFLETSAKNSTNVEQAFM 163
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A0A9X7Z9_LYGHE (Ras-related protein ORAB-1 n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X7Z9_LYGHE) HSP 1 Score: 104 bits (260), Expect = 3.690e-22 Identity = 63/213 (29.58%), Postives = 103/213 (48.36%), Query Frame = 1
Query: 100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATT 738
E+D +L G+ GVGK+ L +R+ DGV+ T GVDF I+T++L GK +K+ ++DT+G+ +R + S+Y + ++ VYD++ S+ +R + ++ EH ++ LLVGNKCD+P R+QV ++ + A + +PF+E SAK TNV EAF+ T
Sbjct: 3 EYDYLFKILLIGDSGVGKSCLLHRFADGVYNDTYISTIGVDFKIRTIEL----------------------------DGK-------------VIKLQIWDTAGQERFRTITSSYYRGANGIIIVYDVTEPSSFTHVRAWLSEIEHYAS------ENVSKLLVGNKCDLP--SRRQVDAEEAKQFAEKLQIPFLEASAKQNTNVEEAFLTMAT 166
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A9NZ10_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NZ10_PICSI) HSP 1 Score: 101 bits (251), Expect = 6.000e-21 Identity = 65/209 (31.10%), Postives = 98/209 (46.89%), Query Frame = 1
Query: 100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
E+D +L G+ GVGK+ L R+ D + T GVDF I+T++ + GK +K+ ++DT+G+ +R + S+Y ++ VYD++ + N ++Q+ N+ K LLVGNKCD L+ R+ V QTG+D A G+PF+E SAKN TNV EAFM
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE----------------------------QDGK-------------MIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEINRYASENVNK------LLVGNKCD--LTTRRVVSYQTGKDFADSLGIPFLETSAKNATNVEEAFM 163
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A8B9IYK6_9PSIT (RAB1A, member RAS oncogene family n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9IYK6_9PSIT) HSP 1 Score: 102 bits (253), Expect = 1.260e-20 Identity = 65/225 (28.89%), Postives = 104/225 (46.22%), Query Frame = 1
Query: 52 RRNRLGSSASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
RR G S ++ + G HD +L G+ GVGK+ L R+ D +T T GVDF I+T++L G T +K+ ++DT+G+ +R + S+Y ++ VYD++ + N ++Q+ + + K LLVGNKCD L+ ++ V T ++ A G+PF+E SAKN TNV ++FM
Sbjct: 50 RRAGAGDSGILAPSPGPHDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-------------------------------DGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK------LLVGNKCD--LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 225
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A0V0JBS9_SCHSO (GTP-binding protein YPTM2 n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A0V0JBS9_SCHSO) HSP 1 Score: 100 bits (249), Expect = 1.390e-20 Identity = 69/246 (28.05%), Postives = 114/246 (46.34%), Query Frame = 1
Query: 85 SGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSA----GRGRGATV 810
S A EHD +L G+ GVGK+ L R+ D V+T + T GVDF I+T++L VK+ ++DT+G+ +R + + Y ++ VYD++ + + ++ N+ + + + + LLVGNK D+ ++R V ++TGQ A+E GMPF+E SAK+ +NV EAF+ ++ + + + KQS G G G V
Sbjct: 3 SEAVVEHDYIFKLLLIGDSGVGKSCLLLRFADDVYTDNFISTIGVDFKIRTVEL-----------------------------------------DGYHVKLQIWDTAGQERFRTITAAYYRGAHGIIIVYDVTDEESFKNVEEWLNEIKRYGR------SDVFKLLVGNKSDLTANRR--VATETGQAFASEAGMPFLETSAKDSSNVEEAFLSMASQILQHFKTK---KQSGLTNTGEGGGTVV 196
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: UPI0003315D20 (ras-related protein ORAB-1-like n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003315D20) HSP 1 Score: 99.0 bits (245), Expect = 2.140e-20 Identity = 63/209 (30.14%), Postives = 99/209 (47.37%), Query Frame = 1
Query: 100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
E+D +L G+ GVGK+ L R+ D +T T GVDF I+T+DL G T +K+ ++DT+G+ +R + S+Y ++ VYDI+ + N ++ + + E + KK LLVGNKCD L+ ++ V T ++ A + G+PF+E SAKN TNV +AF+
Sbjct: 6 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTIDL-------------------------------DGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQESFNNVKLWLQEIERYACESVKK------LLVGNKCD--LTAKRAVEYSTAKEYADQLGIPFLETSAKNSTNVEQAFL 165
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: M5X0Z8_PRUPE (Uncharacterized protein n=6 Tax=Prunus TaxID=3754 RepID=M5X0Z8_PRUPE) HSP 1 Score: 99.8 bits (247), Expect = 2.770e-20 Identity = 68/230 (29.57%), Postives = 108/230 (46.96%), Query Frame = 1
Query: 73 SASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLA 762
+A + A +HD + +L G+ GVGK+ L R+ DG FT T G+DF I+T++L G+R +K+ ++DT+G+ +R + + Y +L VYD++ S+ N +R + + E ++ K +LVGNK DM S+R V + GQ A E+G+ F+E SAK NV E F F+ R + + LA
Sbjct: 2 AAPPARARADHDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-------------------------DGKR----------------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASVSVNK------ILVGNKADMDESKRA-VPASKGQALADEYGIKFLETSAKTNMNVEEVF-FSIGRDIKQRLA 182
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: RAD2C_ARATH (Ras-related protein RABD2c n=65 Tax=Brassicales TaxID=3699 RepID=RAD2C_ARATH) HSP 1 Score: 99.4 bits (246), Expect = 2.780e-20 Identity = 70/237 (29.54%), Postives = 111/237 (46.84%), Query Frame = 1
Query: 100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSAGRGRGATV 810
E+D +L G+ GVGK+ L R+ D + T GVDF I+T++ + G T +K+ ++DT+G+ +R + S+Y ++ YD++ + + N ++Q+ N+ + K LLVGNKCD L+ ++ V ++T + A E G+PF+E SAKN TNV EAFM A T A+ +A Q AG + TV
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVE-------------------------------QDGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNK------LLVGNKCD--LTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFM-AMTAAIKTRMA----SQPAGGSKPPTV 186 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig672.17617.1 >prot_Ecto-sp13_S_contig672.17617.1 ID=prot_Ecto-sp13_S_contig672.17617.1|Name=mRNA_Ecto-sp13_S_contig672.17617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=549bp MGRSCCRRVLDALCPCFRRNRLGSSASVSGAAGEHDMSLNFILHGECGVGback to top mRNA from alignment at Ecto-sp13_S_contig672:775..4737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig672.17617.1 ID=mRNA_Ecto-sp13_S_contig672.17617.1|Name=mRNA_Ecto-sp13_S_contig672.17617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig672:775..4737- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig672:775..4737- >mRNA_Ecto-sp13_S_contig672.17617.1 ID=mRNA_Ecto-sp13_S_contig672.17617.1|Name=mRNA_Ecto-sp13_S_contig672.17617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig672:775..4737- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |