mRNA_Ecto-sp13_S_contig6717.17612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6717.17612.1
Unique NamemRNA_Ecto-sp13_S_contig6717.17612.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6717.17612.1 vs. uniprot
Match: A0A6H5KVF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF9_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 7.800e-84
Identity = 186/197 (94.42%), Postives = 188/197 (95.43%), Query Frame = 1 
Query:    1 DGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEENSRLQTEADAATDAQRAQAKVVQTLTLELEDARKAQQXXXXXXXXXXXXXXXLVASSDTGRPRVNLEGNALRTPTTAWRGAVHGFDNGGGXXXXXXXXFXXXXXXXXXXXXHASSPGSTSNSVPGSSRSNQLHTNAVLEFEERLEAIKVGLSQGVDCWVWE 591
            DGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEEN+RLQTEADAATDAQRAQAKVVQTLTLELEDARKAQQXXXXXXXXXXXXXXXLVASSD+GRPRVNLEGNALRTPTTAWRGAVHGFDNGGG    XXXX XXXXXXXXX   HASSPGSTSNSV GSSRSNQLHTNAVLEFEERLEAIKVGLSQGVDCWVWE
Sbjct:  630 DGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEENARLQTEADAATDAQRAQAKVVQTLTLELEDARKAQQXXXXXXXXXXXXXXXLVASSDSGRPRVNLEGNALRTPTTAWRGAVHGFDNGGGSGAGXXXXXXXXXXXXXXS--HASSPGSTSNSVLGSSRSNQLHTNAVLEFEERLEAIKVGLSQGVDCWVWE 824
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BLAST of mRNA_Ecto-sp13_S_contig6717.17612.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 3.750e-80
Identity = 189/203 (93.10%), Postives = 191/203 (94.09%), Query Frame = 1 
Query:    1 DGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEENSRLQTEADAATDAQRAQAKVVQTLTLELEDARKAQQXXXXXXXXXXXXXXXLVASSDTGRPRVNLEGNALRTPTTAWRGAVHGFDNGGGXXXXXXXXFXXXXXXXXXXXXHASS------PGSTSNSVPGSSRSNQLHTNAVLEFEERLEAIKVGLSQGVDCWVWE 591
            DGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEEN+RLQTEADAATDAQRAQAK VQTLTLELEDARKAQQXXXXXXXXXXXXXXXLVASSD+GRPRVNLEGNALRTPTTAWRGAVHGFDNGGGXXXXXXXX XXXXXXXXXXXX          PGSTSNSVPGSSRSNQLHTNAVLEFEERLEAIKVGLSQGVDCWVWE
Sbjct: 1348 DGDDLLVGMNNEDMMISNLSQVLDEEREARRTAEEENARLQTEADAATDAQRAQAKAVQTLTLELEDARKAQQXXXXXXXXXXXXXXXLVASSDSGRPRVNLEGNALRTPTTAWRGAVHGFDNGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSTSNSVPGSSRSNQLHTNAVLEFEERLEAIKVGLSQGVDCWVWE 1550
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6717.17612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVF9_9PHAE7.800e-8494.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTS1_ECTSI3.750e-8093.10Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6717contigEcto-sp13_S_contig6717:110..1644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score259.6
Seed ortholog evalue1.2e-66
Seed eggNOG ortholog2880.D8LTS1
Model size612
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons3
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Cds size588
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.5907273-CDS-Ecto-sp13_S_contig6717:109..2391681463923.5907273-CDS-Ecto-sp13_S_contig6717:109..239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6717 110..239 -
1681463923.605987-CDS-Ecto-sp13_S_contig6717:672..10181681463923.605987-CDS-Ecto-sp13_S_contig6717:672..1018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6717 673..1018 -
1681463923.622353-CDS-Ecto-sp13_S_contig6717:1508..16201681463923.622353-CDS-Ecto-sp13_S_contig6717:1508..1620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6717 1509..1620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.6328688-UTR-Ecto-sp13_S_contig6717:1620..16441681463923.6328688-UTR-Ecto-sp13_S_contig6717:1620..1644Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6717 1621..1644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6717.17612.1prot_Ecto-sp13_S_contig6717.17612.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6717 110..1620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6717.17612.1

>prot_Ecto-sp13_S_contig6717.17612.1 ID=prot_Ecto-sp13_S_contig6717.17612.1|Name=mRNA_Ecto-sp13_S_contig6717.17612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
MNNEDMMISNLSQVLDEEREARRTAEEENSRLQTEADAATDAQRAQAKVV
QTLTLELEDARKAQQKAEQSAAQAAASAAALVASSDTGRPRVNLEGNALR
TPTTAWRGAVHGFDNGGGGGGGGGGGFGGSGGGGGNSGSHASSPGSTSNS
VPGSSRSNQLHTNAVLEFEERLEAIKVGLSQGVDCWVWEGALLLL*
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mRNA from alignment at Ecto-sp13_S_contig6717:110..1644-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6717.17612.1 ID=mRNA_Ecto-sp13_S_contig6717.17612.1|Name=mRNA_Ecto-sp13_S_contig6717.17612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6717:110..1644- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGACGATCTGCTGGTGGGGATGAACAACGAGGACATGATGATCAG
CAACCTGAGCCAGGTGCTGGACGAGGAGAGGGAGGCCAGGCGGACAGCGG
AGGAGGAGAACTCTCGCCTGCAGACCGAAGCGGACGGTGAGATATGGAAT
GGCGTGACATGTGGTACGATACTGTATGGTATGGTATGGTATGGTACTTG
AAGTAGGAAGGTATGGTACGGTGTGGTACGGTGTGGTATGGCAGGTCGGT
ACTCAAAGAAGAATTTGAGAGTTGGTCATCGTAGATGCCCTTGCTTGTTG
CTGTCGCACGCTGGAAGAAGTTGAAAGTATCACCGATGACAGGCAAACTG
CAGCACACGTGTTGACGGAATGGCAATGGTTCCATCCCAATCATCTAAGA
CGGTATGCTGTGTTTTGTGCTCCTCCTGGTGTGTGTTGGTTGTTGCAGCG
GGGACTGCCCTCGTCCCCTTCTCCTCTATGGTCATCGCTGTTGAGCGGTT
CAAGTCACAAACGGTTCTCCCACTGTTATCCCCCCCCGTCTTTTGTTAAG
GTCTGCTGTTCTAACCTACCCATTTCGTCCCTTCTCCGCATTGCGGCTGC
ATCATTCTCTTTCGCGACACGCACAGCGGCGACGGACGCCCAACGCGCGC
AGGCCAAGGTGGTGCAAACCCTCACCCTCGAGCTAGAGGACGCGCGCAAG
GCCCAGCAAAAGGCCGAGCAATCGGCGGCCCAGGCCGCCGCTTCGGCCGC
CGCTCTCGTGGCATCATCTGATACTGGGAGGCCTAGGGTTAACCTGGAGG
GGAACGCTCTGCGCACCCCTACTACTGCGTGGAGGGGCGCCGTGCATGGT
TTCGACAACGGGGGTGGTGGGGGTGGTGGTGGCGGTGGCGGATTCGGGGG
TAGCGGCGGCGGCGGTGGCAATAGCGGCAGCCACGCGAGCTCGCCGGGAA
GCACGAGCAACAGCGTGCCTGGGTGAGTTGGATGCTGAGAGAGAGAAAGA
CAGATAAACAGACAGATCAGTGTAGACAGACAGAGACACTCTTCAGTTGT
AGGTCTTGTTGGTTCTAGAGAGACAGACTGAATGTGGCTTATTTTTTGCC
CTCTTGAAGGTCGACGTGTGCGTTCAGAATTTTGCCGTATTTCTTCCCCC
CCCTCGCCATCTACGTTATGCATCTTCCCCTCTCGTGCCATCTTGACTGC
CACCGACCTTGTAGTGTGGATGCGACGCGGGGTAGCGAGTACAGCACATG
CATCGTATCTCACTGATGATGTTAATAATCAAAATTCAAGAGGTACCTAT
CTCCACCGATCGTTCCTCTCTCCCACACCCCACACACACTACACACCATG
GATGACGCTGAATACCACCCCCCTGTGCCACACATGCCTCGGCACGGTAC
GACAGGTCCTCCAGGAGCAACCAGCTGCACACGAACGCGGTGCTGGAGTT
CGAGGAGCGCTTGGAGGCCATCAAGGTCGGCCTCAGCCAGGGGGTGGACT
GTTGGGTCTGGGAAGGTGCGCTACTGCTGCTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6717:110..1644-

>mRNA_Ecto-sp13_S_contig6717.17612.1 ID=mRNA_Ecto-sp13_S_contig6717.17612.1|Name=mRNA_Ecto-sp13_S_contig6717.17612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6717:110..1644- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAACGAGGACATGATGATCAGCAACCTGAGCCAGGTGCTGGACGA
GGAGAGGGAGGCCAGGCGGACAGCGGAGGAGGAGAACTCTCGCCTGCAGA
CCGAAGCGGACGCGGCGACGGACGCCCAACGCGCGCAGGCCAAGGTGGTG
CAAACCCTCACCCTCGAGCTAGAGGACGCGCGCAAGGCCCAGCAAAAGGC
CGAGCAATCGGCGGCCCAGGCCGCCGCTTCGGCCGCCGCTCTCGTGGCAT
CATCTGATACTGGGAGGCCTAGGGTTAACCTGGAGGGGAACGCTCTGCGC
ACCCCTACTACTGCGTGGAGGGGCGCCGTGCATGGTTTCGACAACGGGGG
TGGTGGGGGTGGTGGTGGCGGTGGCGGATTCGGGGGTAGCGGCGGCGGCG
GTGGCAATAGCGGCAGCCACGCGAGCTCGCCGGGAAGCACGAGCAACAGC
GTGCCTGGGTCCTCCAGGAGCAACCAGCTGCACACGAACGCGGTGCTGGA
GTTCGAGGAGCGCTTGGAGGCCATCAAGGTCGGCCTCAGCCAGGGGGTGG
ACTGTTGGGTCTGGGAAGGTGCGCTACTGCTGCTTTAG
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