mRNA_Ecto-sp13_S_contig6717.17613.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig6717.17613.1
Unique Name	mRNA_Ecto-sp13_S_contig6717.17613.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 1.150e-134
Identity = 459/609 (75.37%), Postives = 466/609 (76.52%), Query Frame = 1

Query:    1 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKIAYGELRDLRMKAKDVGNLKGDNERLKAEILVLRQAASNAAAAAGDERLTSAMKEADTLREEVEKLKAKFVDNISLHLARTKSTSDDXXXXXXXXXXXDEAESLRAKIAELEATVEXXXXXXXXXXXXXXXXXXXXXXXXXSPDNSAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GGSSEEASALRARVAELEEEVERKNGEMANMPPPXXXXXXXXXXXXQGELEQRVAELEAELAEEKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSENKALRATVAKLEKELAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEKESAFLRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAASPAEDGEDGGSPKGTTNGSAALGSENGDE 1824
            +VFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QKIAYGELRDLR+KAKDVGNLKGDNERLKAEILVLR+AASNAAAAAGDERLTSAMKEAD+LREEVEKLKAK ++ ISLHLARTKS SDD     XXXXX DE  SLRAKIAELEATVE XXXXXXXXXXXXXXXXXXXXXX  SP NSAEL                       XXXXXXXXXXXXX             GGSSEEASALRARVAELEEEVERK  EMANMPPPXXXXXXXX    QGELEQRVAELEAELAEEKKA                                               +  ALRATVAKLEKE                        XXXXXXXXXXXX        EEKESAFLRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAAS  EDGEDGGS KGTTNGSA LGSENGDE
Sbjct:  796 KVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKIAYGELRDLRIKAKDVGNLKGDNERLKAEILVLREAASNAAAAAGDERLTSAMKEADSLREEVEKLKAKVLNTISLHLARTKSISDDSAASGXXXXXADETGSLRAKIAELEATVEEXXXXXXXXXXXXXXXXXXXXXX--SPGNSAELESMRASIADLETALAEEKEKSAAXXXXXXXXXXXXXSVSRSAPAAATESGGSSEEASALRARVAELEEEVERKKEEMANMPPPXXXXXXXXSTGSQGELEQRVAELEAELAEEKKA-----------------------------------------------KAMALRATVAKLEKEXXXXXSALKAAVAKAAGTAGGASKXXXXXXXXXXXX--------EEKESAFLRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAASAGEDGEDGGSLKGTTNGSAVLGSENGDE 1347

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Match: A0A6H5KVF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF9_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 4.330e-125
Identity = 453/643 (70.45%), Postives = 458/643 (71.23%), Query Frame = 1

Query:    1 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKIAYGELRDLRMKAKDVGNLKGDNERLKAEILVLRQAASNAAAAAGDERLTSAMKEADTLRE-------------------EVEKLKAK-----------FVDNISLHLARTKSTSDDXXXXXXXXXXXDEAESLRAKIAELEATVEXXXXXXXXXXXXXXXXXXXXXXXXX----SPDNSAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSEEASALRARVAELEEEVERKNGEMANMPPPXXXXXXXXXXXXQGELEQRVAELEAELAEEKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSENKALRATVAKLEKELAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEKESAFLRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAASPAEDGEDGGSPKGTTNGSAALGSENGDEA 1827
            QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAALRT                                                                            QKIAYGELRDLRMKAKDVGNLK DNERLKAEILVLRQAASNAAAAAGDERLTSAMKEAD+LRE                   EV K KA+              +              XXXXXXXXXXXDEAESLRAKIAELEATVE XXXXXXXXXXXXXXXXXXXXXXXX    SPD SAEL                  XXXXXXXXXXXXXXXXXXXXXX        GGSSEEASALRARVAELEEE+ERKN EMANMPPPXX XXXXX    QGELEQRVAELEAELAEEKKA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ENKALRATVAKLEKELAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EEKESAFLRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAAS  E+GEDGGSPK TTNGS  LGSENGDEA
Sbjct:   12 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAALRTQTAYRRHFARKNFLSIKGAALALQCATRWRKAAKSWYRMLAPWRAHRKLRSATLALQCRMR---------------QKIAYGELRDLRMKAKDVGNLKVDNERLKAEILVLRQAASNAAAAAGDERLTSAMKEADSLREXXXXXXXXXXXXXXXXXXGEVAKNKAEAXXXXXXXXXXXXXDAXXXXXXXXXXXXXXXXXXXXXXXXDEAESLRAKIAELEATVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPDGSAELETMRASIADLETALAAEKXXXXXXXXXXXXXXXXXXXXXXAPVAASESGGSSEEASALRARVAELEEELERKNEEMANMPPPXXVXXXXXSTSSQGELEQRVAELEAELAEEKKAKAMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------ENKALRATVAKLEKELAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----EEKESAFLRKQLGELEAALSRERQERERAVLDRDRSEELAKRMSKSLKNRGMSAAASAGEEGEDGGSPKRTTNGSGVLGSENGDEA 628

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Match: A0A6H5KDB8_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.020e-32
Identity = 185/248 (74.60%), Postives = 204/248 (82.26%), Query Frame = 1

Query:    1 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKIAYGELRDLRMKAKDVGNLKGDNERLKAEILVLRQAASNAAAA---AGDERL-------------TSAMKEADTLREEVEKLKAKFVDNISLHLA 696
            +VFLRKNA+DFLEMIRS+RITSAAVTLQRVARGFV RR F +   A+  IQR+SRG IARR+VEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QKIAYGELR LR+KAKDVGNLKG+NERLKAEIL LRQAA+ A+     A DE++             +S  KE D+LR EV  L+A+  + + L LA
Sbjct:  763 KVFLRKNAYDFLEMIRSRRITSAAVTLQRVARGFVSRRAFSSAIWAVRFIQRVSRGTIARRRVEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRQKIAYGELRGLRIKAKDVGNLKGENERLKAEILALRQAAAAASXXXXPASDEQVRAKDLVIICQVSSSSNGKEVDSLRREVVTLRARVAE-LELQLA 1009

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.650e-9
Identity = 111/221 (50.23%), Postives = 136/221 (61.54%), Query Frame = 1

Query:    1 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQ--------------------------RMSRGMIARRKVEHMRRMRAALRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKIAYGELRDLRMKAKDVGNLKGDNERLKAEILVLRQAASNAAA 585
            +VFLRKN++D LEM+RS+R+  AAV++Q + RGF+Y +V+   ++A++ +Q                          R  RG IARR  + +RR RAA R                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +IA   L+ LR +AKDVGNLK DNE+LK E+  LR+ A  AAA
Sbjct: 1171 KVFLRKNSYDLLEMLRSRRMADAAVSIQAIVRGFLYAKVYRTQRNAVVTLQVHANSNSFLTAFISPPXXXPLRAHAQRYMRGFIARRLAQQLRRRRAATRLQALARRGVARRRFNRLKRGVICLQSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIAKATLKQLRTEAKDVGNLKRDNEKLKEEMAALREMARKAAA 1391

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Match: A0A482RWB6_9ARCH (Myosin motor domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWB6_9ARCH)

HSP 1 Score: 65.5 bits (158), Expect = 2.280e-7
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1

Query:    1 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRA 213
            +VFLRK AHD LE  RS  + + A+ LQ V R F  RR F   K A  ++QRM+RG+ ARRKV  MRR RA
Sbjct:  543 KVFLRKEAHDLLERHRSALLVANAIVLQSVMRAFGSRRRFLILKMATRIVQRMTRGLAARRKVAAMRRERA 613

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Match: UPI0010BD7104 (unconventional myosin-Va n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BD7104)

HSP 1 Score: 59.3 bits (142), Expect = 2.200e-5
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1

Query:    1 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMR 201
            ++F R     ++E +R  ++  AA+T+Q+V +GFVYRR +    +AL  IQR  RG++ARRK  H+R
Sbjct:  726 KIFFRAGQVAYMEKLRGDKLNRAAITIQKVVKGFVYRRRYLRKINALRGIQRYGRGLLARRKARHLR 792

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Match: A0A7R9BDK4_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BDK4_9CRUS)

HSP 1 Score: 58.9 bits (141), Expect = 3.080e-5
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1

Query:    1 QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLIQRMSRGMIARRKVEHMRRMRAA 216
            +VF R     + E +RS R+    + +Q+V RG++ ++ +   K A+L IQR+SRG IARR+V+ MR +RAA
Sbjct:  847 KVFFRAGQVAYFEKLRSDRMRQCGILIQKVIRGWLAKKQYMVAKKAVLNIQRVSRGFIARRRVQRMREIRAA 918

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6717.17613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7


Match Name	E-value	Identity	Description
D8LTS1_ECTSI	1.150e-134	75.37	Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880...	[more]
A0A6H5KVF9_9PHAE	4.330e-125	70.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDB8_9PHAE	1.020e-32	74.60	Myosin motor domain-containing protein n=2 Tax=Ect...	[more]
A0A835YXT9_9STRA	1.650e-9	50.23	P-loop containing nucleoside triphosphate hydrolas...	[more]
A0A482RWB6_9ARCH	2.280e-7	53.52	Myosin motor domain-containing protein (Fragment) ...	[more]
UPI0010BD7104	2.200e-5	41.79	unconventional myosin-Va n=1 Tax=Galendromus occid...	[more]
A0A7R9BDK4_9CRUS	3.080e-5	41.67	Hypothetical protein n=1 Tax=Notodromas monacha Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6717	contig	Ecto-sp13_S_contig6717:2253..7470 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	453.8
Seed ortholog evalue	1.3e-124
Seed eggNOG ortholog	2880.D8LTS1
Model size	1828
KEGG ko	ko:K10357
Hectar predicted targeting category	other localisation
GOs	GO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons	7
EggNOG free text desc.	translation initiation factor activity
EggNOG OGs	COG5022@1,KOG0160@2759
Cds size	1827
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03019,ko03029,ko04131,ko04812

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6717.17613.1	prot_Ecto-sp13_S_contig6717.17613.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig6717 2254..7470 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463923.5022435-CDS-Ecto-sp13_S_contig6717:2253..2443	1681463923.5022435-CDS-Ecto-sp13_S_contig6717:2253..2443	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6717 2254..2443 -
1681463923.5134254-CDS-Ecto-sp13_S_contig6717:3097..3543	1681463923.5134254-CDS-Ecto-sp13_S_contig6717:3097..3543	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6717 3098..3543 -
1681463923.5225577-CDS-Ecto-sp13_S_contig6717:4053..4578	1681463923.5225577-CDS-Ecto-sp13_S_contig6717:4053..4578	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6717 4054..4578 -
1681463923.5320218-CDS-Ecto-sp13_S_contig6717:4986..5049	1681463923.5320218-CDS-Ecto-sp13_S_contig6717:4986..5049	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6717 4987..5049 -
1681463923.5413682-CDS-Ecto-sp13_S_contig6717:5713..5972	1681463923.5413682-CDS-Ecto-sp13_S_contig6717:5713..5972	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6717 5714..5972 -
1681463923.550798-CDS-Ecto-sp13_S_contig6717:6343..6513	1681463923.550798-CDS-Ecto-sp13_S_contig6717:6343..6513	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6717 6344..6513 -
1681463923.5607984-CDS-Ecto-sp13_S_contig6717:7296..7470	1681463923.5607984-CDS-Ecto-sp13_S_contig6717:7296..7470	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6717 7297..7470 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig6717:2253..7470-
coding sequence from alignment at Ecto-sp13_S_contig6717:2253..7470-

protein sequence of mRNA_Ecto-sp13_S_contig6717.17613.1

>prot_Ecto-sp13_S_contig6717.17613.1 ID=prot_Ecto-sp13_S_contig6717.17613.1|Name=mRNA_Ecto-sp13_S_contig6717.17613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=609bp
QVFLRKNAHDFLEMIRSQRITSAAVTLQRVARGFVYRRVFFATKHALLLI
QRMSRGMIARRKVEHMRRMRAALRTQTAYRRHFARKNFLSIKGAALALQC
ATRWRKAAKVHTELRRQHRSTKIQSWYRMLAPWRAHRKLRSATLALQCRM
RQKIAYGELRDLRMKAKDVGNLKGDNERLKAEILVLRQAASNAAAAAGDE
RLTSAMKEADTLREEVEKLKAKFVDNISLHLARTKSTSDDSASSGAAAAA
ADEAESLRAKIAELEATVEEEKHAAATAVAASTTTTTTTTAAAASPDNSA
ELETMRASIADLEAALAEEKEKSAAAAAAAAANADASSVSRSAPAAPAES
GGSSEEASALRARVAELEEEVERKNGEMANMPPPPAAPAAPASTGSQGEL
EQRVAELEAELAEEKKAKAMASAAAAASSSASSSSPDSNNGLRRRSSGSG
SGSGSGGGGGGGGSENKALRATVAKLEKELAAEKSALKAAVARAAGATGG
ASKAEAEAERQAERQAERQAEIEEEKESAFLRKQLGELEAALSRERQERE
RAVLDRDRSEELAKRMSKSLKNRGMSAAASPAEDGEDGGSPKGTTNGSAA
LGSENGDEA

mRNA from alignment at Ecto-sp13_S_contig6717:2253..7470-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig6717.17613.1 ID=mRNA_Ecto-sp13_S_contig6717.17613.1|Name=mRNA_Ecto-sp13_S_contig6717.17613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6717:2253..7470- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTTTCTGCGCAAGAACGCTCACGACTTCCTGGAGATGATCCGCTC
CCAGCGCATTACGTCGGCCGCGGTGACGCTGCAGAGAGTGGCCAGGGGCT
TCGTCTACCGGCGCGTGTTTTTCGCCACCAAGCATGCCCTGCTGCTCATC
CAGAGGATGTCGAGGGGCATGATCGTGAGTCTGAGTCTGAACCTGAGTCC
CTCTCGCCTGCGGATGGATGCGTGCGTAGTGCACTCGTCCACTTCTTAGT
GCTAGCTCACCAGAAGACTCGGGAGAACGGGTTACATTGAAGACTCGGAT
GTTCGCTGGCATCAAGTTGCTCCTCCTCCTCCTCCTCCCTCAATTCGTTA
TTTTGTTGTGTTCTTCTTTGGTCCGCCGTGCACAGGCCAAAAATTTCTAT
CTAGAGTTTTTTCTCGCGTGTTTTTCACTTTCTTTTGCGAGCATCGAGGA
CTTGCTTCTATTTTTTTTTTGGTGCTTGTTCTGTATATGATGTTGATAGT
CTCGAGCACGTCGGTGTAGCTTTTTGGGGACTATCAGTATCGTGTAAAAG
GTTTCTACCTACGCCTGCCGTGCACTGTGGCGCACGAATAATTTTCGTGC
AACGAAGTGCTTGTATTGCCCCCGATGTTGGGCTAGACTGAAGGCACCTC
GATTGGTACGTGTTGTTGCTGCATCTAATCGCCACGAGTCCTCCGCACGC
TGCACACCCTGAAAACTAGTATCACTTCGAACAAGAAATCAGAGAGATTG
TTTGTCGAAAGCATGAGCGCCAAGTGTCGGGGAAGCGGACGACGCTGGCT
ATTCAAGCGGCCCCCTCTCCCTCTCCTCTCGCTCCCCATACTAATGACAT
GCTCCATAAATGTGGATGCAATATTCCGACCCTTGCCCGCGCGCGCCCTC
CACAGCTTTTCCTTCTCTCTTTGAAAACCTCTTGTTTATCTTGGTTCTTC
TTCTCAGGCACGACGCAAAGTAGAGCACATGCGCCGGATGCGGGCGGCGC
TTCGCACGCAGACGGCCTACCGGCGTCACTTTGCGAGGAAGAACTTCCTG
TCCATCAAGGGAGCGGCCCTTGCCCTGCAGTGCGCAACGCGCTGGCGCAA
GGCCGCGAAGGTCCACACCGAGCTTAGGTGAGATAGATCTCCGGTAGATG
TCCGATATAGAGATATTCGCAACTGCTGTAGACGTATGTAGCGGTTTGCA
TCCATATTGACATCGGTTGGCGTTGCGGTGATTACATACGGAGGACATGG
GTAGGGGAAGGTGCACAATCTTGGGAGGGCAGCTTTAGTCAGTTCATATC
ACTTTCGCTTCGTTCACTATGAAGGTACGGCAACTGCAGCGCAGCAACAA
GTAACATACCCACGATCTCCTCGATGTTAACGTTGAAGCCTCTCGAAGAA
CTGGTATTTGGGAGGCCGAATTTCAGTCAAAACTCACTCTGGCCCGCCAT
AATCCATCTGTGTGCCCCCCTCCCTTCCCCCCACTTATTGCCATACAGGC
GCCAGCACCGGTCCACTAAAATCCAGAGCTGGTACCGCATGCTCGCCCCT
TGGCGTGCCCACCGTAAGCTGCGGTCTGCGACGCTGGCGCTGCAGTGCCG
GATGCGGCAGAAGATAGCCTACGGGGAGCTAAGGGACCTCCGCATGAAGG
CGAAGGATGTGGGCAACCTCAAGGGGGACAACGAGCGCCTCAAGGCAGAG
ATCCTCGTGCTCAGGCAGGCCGCCTCAAACGCTGCGGCTGCCGCCGGCGA
TGAGCGGGTGCGTTCTAGAGCCGGGGGGGGAAAGCTACCGTTGTGCGGTG
GCCTTAGTAAACATGTTTGATAACTCATGCAATGGGGGAATTTGGATTTG
GGTGAGCGATGAGGTCTGCGTCCCCCTTCTCTGTTCTTTTTCCTCATAAA
TTTATTAATTTCTCGCTAAGGCCCCATTGTTTTTTCTTGTTCGGTACATT
GGTGACCCTGTCGTGTAGTCGGTTACGGTAGGTGCCTGACGTGCCAGGTG
TCTGCGGGTGTGCAGTTTTCCCTGCGTACCATGACCACGCTTTTGGTTCG
TAACGAAACATCTCTCGAGGAAGTGGACTGCTGGGGTGAAGTGGTGGGTA
CGGGTGGGTTAGTCAGATAGTCTCTCTCGCGCGCCTAAGGTACGGTAGAT
GTACACTCGGCGCATCCGCCCGATCTCTCCGCCCCATCAATGGACAGGGC
GCCGTGGTGGTCTAGGCCAGGTCCCATGTCTTTTTCGGGGCGGTTGCCAG
GCATGCTTTTCGTGCCACTCACGTGCACCTTCTCCTTGCAGTGTTCATGT
CGGCGATTTGTCTAGTCACGAGCAGTGCTGAAAGCTTGTCACGTGTTCCA
CAAACTCCGTGATGCGAGTGCATAGCGCTTGGTCTGACGACCCCTACCCT
CGTTTTTCTGCTCTTGTGCAGCTGACATCGGCTATGAAGGAGGCGGATAC
CCTGAGGGAAGAGGTAGAGAAGCTCAAGGCCAAGGTGGGAGAGCTTGAGA
CACAGGTGGCGGAGGGGGAGGTTGCCAAGAACAAAGCAGAGGCTGCCGCC
GCTGCCGCTACGGCAAAGGCTGAGGCTGCAACAGATGCTGCTGCCGCTGC
CGCCGCCGCTGCTGCTACAGGTGAGTCGAGAAACGTGACCGCGTGTTGAT
GTCTGTGCTTGGGGGTGCTTTGGATGGCCGTTGGTGGTGATGGTATGGGT
GGCATGGCGCGCAGTTCTATCGTCTAGTAATATGTTTTCGTCATCCGTCG
AGCGTCGGTGTTGATGCGGGGTCGGTGCTTAGACAGTCCAAGCACCGCCG
AGTCTGTCCGCCCACAAGACCACCGTCCGACTGGCCGCCGCGGTCTGTCG
TCCCGCACCCTTTCTTCATACACCCTGAGCATTTGTTCGAAGTTTGTCGA
CAATATCTCTCTCCATCTCGCGCGAACAAAATCAACTTCAGACGACTCGG
CCTCCTCGGGTGCCGCCGCCGCGGCCGCCGACGAAGCCGAGAGCCTCCGC
GCCAAGATCGCGGAACTCGAGGCCACCGTCGAGGAGGAGAAGCACGCTGC
CGCCACCGCCGTCGCCGCCTCCACGACGACGACCACCACCACCACCGCCG
CCGCCGCTTCTCCCGACAACTCCGCCGAGCTTGAGACCATGCGCGCGTCC
ATCGCCGACCTCGAGGCCGCTCTCGCCGAAGAGAAGGAGAAGTCAGCCGC
CGCCGCTGCCGCTGCTGCCGCTAACGCTGACGCTTCTTCCGTAAGCCGCA
GCGCTCCTGCCGCGCCCGCGGAGAGCGGAGGGAGTTCGGAAGAGGCATCG
GCCCTGCGTGCCAGGGTTGCGGAGCTCGAGGAGGAGGTTGAGCGGAAGAA
CGGAGAGATGGCGAACATGCCTCCGCCACCAGCGGCACCGGCGGCGCCGG
CGTCGACTGGCTCACAGGTGAGCAATGGCGGCAAGGCGTAGAGGCCCGGA
GGGCTTAATTTGGACTGTTGAAGCGTTATTGGAAAACTTGAGTTTTATGA
ATTGGATTCCTGGAGAGCTTGAGCGGTGTCTCGGTCTCTGGCAAGGAGAT
TGTGTGAGGGCAACACGGGGGGATTACAATTATCTACACACGGAGAGCGG
GGAGGGGGAGAGAGAGAACGCGATGCGGGAATATGTCAGGTTCATGTCCT
TGTTGGCCCTTTGCTTTGTGATCGGCAATGGTGTACAAATTGCGGTATGC
GGTATGCACCGCATATTTTTTTGTTGTTTTGCGGAGCTTGGAGGGTTAAT
AGTCGACCGAGTCTTTGTGTGATGTATCTTTGAAGTTGATGTGTGGTCTC
ATTTGATAAGGGAAAACGCACACGCACTGTACTACAAGTGTTTCATGCGG
CGTTTTTTTTTAACGGAACGACAGGCCATCTCTCACCCCCCACCGTGTTG
TCGCACTTATCCTCCACAACATGCTAGGGGGAGCTTGAGCAGCGCGTGGC
AGAGCTGGAGGCGGAGCTTGCCGAGGAAAAGAAGGCCAAGGCTATGGCAA
GCGCCGCCGCCGCCGCATCATCATCAGCATCATCATCTTCCCCGGACAGC
AACAATGGCCTCCGCAGGAGGAGCAGCGGCTCGGGCAGCGGCTCCGGCAG
CGGCGGCGGCGGCGGCGGCGGCGGCAGCGAGAACAAGGCTCTGCGTGCGA
CAGTGGCCAAGCTGGAGAAGGAGCTAGCGGCAGAGAAGTCGGCGCTGAAG
GCAGCCGTGGCGAGGGCAGCGGGTGCGACGGGTGGGGCTTCCAAGGCAGA
GGCTGAGGCTGAGAGGCAGGCTGAGAGGCAGGCTGAGAGGCAGGCTGAGA
TCGAAGAGGAGAAGGAATCGGCGTTTTTGCGGAAGCAGCTTGGGGAGCTG
GAGGCTGCGTTGTCACGGGAAAGGTGGGCGCTTTTTCGTGTCGGTGGGGG
GTGTTTTGGGGGGCGCTTATGCTTACTGCACGAACTGATGCATTACACCT
GGCACGCGATTTGTGTTGTTCGATGTGATTAGGGTTATTGAGGTGCGGGA
GAGGAATGTTGTGATCAGGTGTTTGTTCGGCAGCTGGTCTTGGTACCAGG
TGTACGTAATAGGAGTTTTGTTTTGGGCGATGCGTTCGGAGTGAAAACGG
TAAATGTGAAGAGGTCTCTGCGCGGAGAGGGATAATGGAGTTCACGGGTG
AGATGAAATGAGCTAGAGGGATGGCTTGGAAGGTGGTCAGGTTAAGGGTA
ATGTGTTGTGTCAAGAACCCCGTGACAAAACGAACGGGGCCTCGCTGCTG
ATTTGGATGTGCAAGGGATTTGCTGTTGCACGGAGACCACAAAAACGTTT
TTAAACGGCGAGCGGAGGCAGCAACAGCAACGAACAAAGAGCATCAGCAA
CACTCTCAGGCCGTTGATCCCACTGTACGTGGCAGCAGCAACATCAGTAA
CCACGGGCGTCAACAACAGCACTGCCGTCAAGACCTAACCCCATTCCTCC
AAACAAAAAGTGGTCAAGAGCACCACAACATAGCGAGCCGCGAACCCATC
ATTTCTCGAAACAATAACTAAACACAGGCAAGAGCGAGAGCGAGCGGTGC
TGGATCGCGACCGCTCGGAGGAGCTTGCGAAGCGCATGTCCAAGAGCCTG
AAGAATCGCGGCATGTCGGCAGCGGCATCACCCGCTGAGGACGGAGAGGA
CGGCGGCTCTCCCAAGGGGACCACCAACGGCTCCGCTGCTCTGGGCTCCG
AAAACGGCGACGAGGCGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6717:2253..7470-

>mRNA_Ecto-sp13_S_contig6717.17613.1 ID=mRNA_Ecto-sp13_S_contig6717.17613.1|Name=mRNA_Ecto-sp13_S_contig6717.17613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1827bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6717:2253..7470- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTTTCTGCGCAAGAACGCTCACGACTTCCTGGAGATGATCCGCTC
CCAGCGCATTACGTCGGCCGCGGTGACGCTGCAGAGAGTGGCCAGGGGCT
TCGTCTACCGGCGCGTGTTTTTCGCCACCAAGCATGCCCTGCTGCTCATC
CAGAGGATGTCGAGGGGCATGATCGCACGACGCAAAGTAGAGCACATGCG
CCGGATGCGGGCGGCGCTTCGCACGCAGACGGCCTACCGGCGTCACTTTG
CGAGGAAGAACTTCCTGTCCATCAAGGGAGCGGCCCTTGCCCTGCAGTGC
GCAACGCGCTGGCGCAAGGCCGCGAAGGTCCACACCGAGCTTAGGCGCCA
GCACCGGTCCACTAAAATCCAGAGCTGGTACCGCATGCTCGCCCCTTGGC
GTGCCCACCGTAAGCTGCGGTCTGCGACGCTGGCGCTGCAGTGCCGGATG
CGGCAGAAGATAGCCTACGGGGAGCTAAGGGACCTCCGCATGAAGGCGAA
GGATGTGGGCAACCTCAAGGGGGACAACGAGCGCCTCAAGGCAGAGATCC
TCGTGCTCAGGCAGGCCGCCTCAAACGCTGCGGCTGCCGCCGGCGATGAG
CGGCTGACATCGGCTATGAAGGAGGCGGATACCCTGAGGGAAGAGGTAGA
GAAGCTCAAGGCCAAGTTTGTCGACAATATCTCTCTCCATCTCGCGCGAA
CAAAATCAACTTCAGACGACTCGGCCTCCTCGGGTGCCGCCGCCGCGGCC
GCCGACGAAGCCGAGAGCCTCCGCGCCAAGATCGCGGAACTCGAGGCCAC
CGTCGAGGAGGAGAAGCACGCTGCCGCCACCGCCGTCGCCGCCTCCACGA
CGACGACCACCACCACCACCGCCGCCGCCGCTTCTCCCGACAACTCCGCC
GAGCTTGAGACCATGCGCGCGTCCATCGCCGACCTCGAGGCCGCTCTCGC
CGAAGAGAAGGAGAAGTCAGCCGCCGCCGCTGCCGCTGCTGCCGCTAACG
CTGACGCTTCTTCCGTAAGCCGCAGCGCTCCTGCCGCGCCCGCGGAGAGC
GGAGGGAGTTCGGAAGAGGCATCGGCCCTGCGTGCCAGGGTTGCGGAGCT
CGAGGAGGAGGTTGAGCGGAAGAACGGAGAGATGGCGAACATGCCTCCGC
CACCAGCGGCACCGGCGGCGCCGGCGTCGACTGGCTCACAGGGGGAGCTT
GAGCAGCGCGTGGCAGAGCTGGAGGCGGAGCTTGCCGAGGAAAAGAAGGC
CAAGGCTATGGCAAGCGCCGCCGCCGCCGCATCATCATCAGCATCATCAT
CTTCCCCGGACAGCAACAATGGCCTCCGCAGGAGGAGCAGCGGCTCGGGC
AGCGGCTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGAGAACAA
GGCTCTGCGTGCGACAGTGGCCAAGCTGGAGAAGGAGCTAGCGGCAGAGA
AGTCGGCGCTGAAGGCAGCCGTGGCGAGGGCAGCGGGTGCGACGGGTGGG
GCTTCCAAGGCAGAGGCTGAGGCTGAGAGGCAGGCTGAGAGGCAGGCTGA
GAGGCAGGCTGAGATCGAAGAGGAGAAGGAATCGGCGTTTTTGCGGAAGC
AGCTTGGGGAGCTGGAGGCTGCGTTGTCACGGGAAAGGCAAGAGCGAGAG
CGAGCGGTGCTGGATCGCGACCGCTCGGAGGAGCTTGCGAAGCGCATGTC
CAAGAGCCTGAAGAATCGCGGCATGTCGGCAGCGGCATCACCCGCTGAGG
ACGGAGAGGACGGCGGCTCTCCCAAGGGGACCACCAACGGCTCCGCTGCT
CTGGGCTCCGAAAACGGCGACGAGGCG