mRNA_Ecto-sp13_S_contig67139.17608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67139.17608.1
Unique NamemRNA_Ecto-sp13_S_contig67139.17608.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67139.17608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67139contigEcto-sp13_S_contig67139:2..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size662
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.2147245-UTR-Ecto-sp13_S_contig67139:1..2511681463923.2147245-UTR-Ecto-sp13_S_contig67139:1..251Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67139 2..251 +
1681463923.2352245-UTR-Ecto-sp13_S_contig67139:584..6631681463923.2352245-UTR-Ecto-sp13_S_contig67139:584..663Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67139 585..663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.2242703-CDS-Ecto-sp13_S_contig67139:251..5841681463923.2242703-CDS-Ecto-sp13_S_contig67139:251..584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67139 252..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67139.17608.1prot_Ecto-sp13_S_contig67139.17608.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67139 252..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67139.17608.1

>prot_Ecto-sp13_S_contig67139.17608.1 ID=prot_Ecto-sp13_S_contig67139.17608.1|Name=mRNA_Ecto-sp13_S_contig67139.17608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MTGTPTMVRSRIAYRKKSPSWLTAVAPCQEILMPLSADCGPSQSVWKENI
NTCNLRGNKATNNWLMHILMRLIDLLHDVCHVYEGQEEKMLTSAYIHHAD
CVWFTVVSTC*
back to top

mRNA from alignment at Ecto-sp13_S_contig67139:2..663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67139.17608.1 ID=mRNA_Ecto-sp13_S_contig67139.17608.1|Name=mRNA_Ecto-sp13_S_contig67139.17608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67139:2..663+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGCCGGTGTCGCTGACTGTGTGTGGTCCACAGTCAGTCTGGAAATTG
TACAAGCGAACTATATGCTGAGATGCTGAGTAAAATACTGTGGTCCACAA
GTATATGCTGAAATGCTGACAACTGTGTGTGGTCCAGTCAGTCTGGAAAA
CGACTCGACGCGAACAGGAAAAGGAGAGCCGCGAAGGCGACAAGCCGGGC
TTACATGATCCCTGCAGTATTTGTGTGCGACAGACGGGAAGTCAAGGCGT
ATGACCGGTACACCCACCATGGTTCGCAGTCGAATAGCGTATCGAAAGAA
GTCCCCATCATGGTTGACAGCGGTTGCGCCCTGCCAAGAGATTCTAATGC
CACTGTCTGCTGACTGTGGTCCTTCGCAGTCAGTCTGGAAGGAAAACATA
AATACGTGCAACCTACGCGGTAACAAAGCTACAAATAACTGGTTGATGCA
CATCCTGATGAGGTTGATTGACCTCTTACATGATGTGTGCCATGTGTACG
AAGGGCAAGAGGAGAAAATGCTGACATCTGCATACATACATCATGCTGAC
TGTGTGTGGTTCACAGTAGTCAGTACATGCTGACTGTGCATGGTCCACAG
TCAGTCTGGCAATTGTACAAGCGAACTATATGCCGAGATGCTGAGTACTG
TGGTCCACAGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67139:2..663+

>mRNA_Ecto-sp13_S_contig67139.17608.1 ID=mRNA_Ecto-sp13_S_contig67139.17608.1|Name=mRNA_Ecto-sp13_S_contig67139.17608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67139:2..663+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGGTACACCCACCATGGTTCGCAGTCGAATAGCGTATCGAAAGAA
GTCCCCATCATGGTTGACAGCGGTTGCGCCCTGCCAAGAGATTCTAATGC
CACTGTCTGCTGACTGTGGTCCTTCGCAGTCAGTCTGGAAGGAAAACATA
AATACGTGCAACCTACGCGGTAACAAAGCTACAAATAACTGGTTGATGCA
CATCCTGATGAGGTTGATTGACCTCTTACATGATGTGTGCCATGTGTACG
AAGGGCAAGAGGAGAAAATGCTGACATCTGCATACATACATCATGCTGAC
TGTGTGTGGTTCACAGTAGTCAGTACATGCTGA
back to top