prot_Ecto-sp13_S_contig6712.17606.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6712.17606.1
Unique Nameprot_Ecto-sp13_S_contig6712.17606.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length237
Homology
BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Match: D8LFS1_ECTSI (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS1_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 4.470e-127
Identity = 197/237 (83.12%), Postives = 204/237 (86.08%), Query Frame = 0
Query:    1 MMIYSSFRHSARVGCRRSMCPAALTTVGCRQQQPPGESRASAAFSNRPALQRRTLSSSARHIGMGSSPRFMSKHPGFGSRYHSIHHGVEKDTPPPXXKTAPPATMTAVASKASTLADRWKSARSKVTAEYLKRFMKKYGRVAATFHISVFLGTLGTCYSLVDYGGLDIAELVKDMPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREERRREGE-GGATPP 236
            MMIYSSFR+SARVGCRR+MCPAALTTVGCRQQQPPG SR SAAFSN PA QRRTLS S R IGMGSSP FMSKHPG GS  HSIH GVEKDTP  XX         AVASKA TLADRWK+ARSKVTAEYLK FMK+YGRVAATFH+SVFLGTLGTCYSL+DYGGLDIAELVKD+PILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREE       GG TPP
Sbjct:    1 MMIYSSFRYSARVGCRRAMCPAALTTVGCRQQQPPGGSRTSAAFSNGPAAQRRTLSGSVRDIGMGSSPSFMSKHPGCGSSNHSIHRGVEKDTPXXXXXXXXXXXXAAVASKAPTLADRWKAARSKVTAEYLKHFMKRYGRVAATFHMSVFLGTLGTCYSLIDYGGLDIAELVKDVPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREEXXXXXXXGGTTPP 237          
BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Match: A0A024GJM7_9STRA (DUF1279 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GJM7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.640e-15
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 0
Query:  129 EYLKRFMKKYGRVAATFHISVFLGTLGTCYSLVDYGGLDIAELVKDMPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLA 220
            E L+  MKKYG++AA FH S+F  T G  Y ++   G+D+   +  +P++      A AG+LA AY  T A GP R +LT+T TP +AR LA
Sbjct:    3 EQLRVVMKKYGKIAAAFHASMFAATFGASYGVIR-SGVDVETFLDRIPMVDARKVDASAGSLACAYIATLATGPARGLLTITATPMLARLLA 93          
BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Match: A0A2R5GG24_9STRA (DUF1279 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG24_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.690e-5
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 0
Query:  126 VTAEYLKRFMKKYGRVAATFHISVFLGTLGTCYSLVD---YGGLDIAELVKDMPIL----ADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREERRREGEGGAT 234
            V    +K  ++ +G VA   +  +++GTLG  Y LV+    G  D   ++K   +      D + P   GN A+A+ +T    PPR +L + VTPR+AR + G   R+R+ +G A 
Sbjct:  225 VPVSRIKALIRDFGPVAIGVYGGIYVGTLGLLYGLVEADIVGAGDAISVLKSTGLNHFVDMDKINPR-MGNFAVAWILTKFTEPPRLLLALAVTPRVARAI-GWAPRKRDKDGNAV 338          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFS1_ECTSI4.470e-12783.12DUF1279 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A024GJM7_9STRA7.640e-1543.48DUF1279 domain-containing protein n=2 Tax=Albugo c... [more]
A0A2R5GG24_9STRA3.690e-531.90DUF1279 domain-containing protein n=1 Tax=Hondaea ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009688Domain of unknown function DUF1279PFAMPF06916DUF1279coord: 131..213
e-value: 3.7E-13
score: 49.8
NoneNo IPR availablePANTHERPTHR21377UNCHARACTERIZEDcoord: 120..224
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 141..161
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 162..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6712contigEcto-sp13_S_contig6712:1771..3315 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6712.17606.1mRNA_Ecto-sp13_S_contig6712.17606.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6712 1771..3315 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6712.17606.1 ID=prot_Ecto-sp13_S_contig6712.17606.1|Name=mRNA_Ecto-sp13_S_contig6712.17606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MMIYSSFRHSARVGCRRSMCPAALTTVGCRQQQPPGESRASAAFSNRPAL
QRRTLSSSARHIGMGSSPRFMSKHPGFGSRYHSIHHGVEKDTPPPPPKTA
PPATMTAVASKASTLADRWKSARSKVTAEYLKRFMKKYGRVAATFHISVF
LGTLGTCYSLVDYGGLDIAELVKDMPILADNLPPAGAGNLAIAYGMTSAI
GPPRAVLTVTVTPRIARFLAGREERRREGEGGATPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279