mRNA_Ecto-sp13_S_contig6712.17606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6712.17606.1
Unique NamemRNA_Ecto-sp13_S_contig6712.17606.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Match: D8LFS1_ECTSI (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS1_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 4.470e-127
Identity = 197/237 (83.12%), Postives = 204/237 (86.08%), Query Frame = 1 
Query:    1 MMIYSSFRHSARVGCRRSMCPAALTTVGCRQQQPPGESRASAAFSNRPALQRRTLSSSARHIGMGSSPRFMSKHPGFGSRYHSIHHGVEKDTPPPXXKTAPPATMTAVASKASTLADRWKSARSKVTAEYLKRFMKKYGRVAATFHISVFLGTLGTCYSLVDYGGLDIAELVKDMPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREERRREGE-GGATPP 708
            MMIYSSFR+SARVGCRR+MCPAALTTVGCRQQQPPG SR SAAFSN PA QRRTLS S R IGMGSSP FMSKHPG GS  HSIH GVEKDTP  XX         AVASKA TLADRWK+ARSKVTAEYLK FMK+YGRVAATFH+SVFLGTLGTCYSL+DYGGLDIAELVKD+PILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREE       GG TPP
Sbjct:    1 MMIYSSFRYSARVGCRRAMCPAALTTVGCRQQQPPGGSRTSAAFSNGPAAQRRTLSGSVRDIGMGSSPSFMSKHPGCGSSNHSIHRGVEKDTPXXXXXXXXXXXXAAVASKAPTLADRWKAARSKVTAEYLKHFMKRYGRVAATFHMSVFLGTLGTCYSLIDYGGLDIAELVKDVPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREEXXXXXXXGGTTPP 237
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BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Match: A0A024GJM7_9STRA (DUF1279 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GJM7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.640e-15
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  385 EYLKRFMKKYGRVAATFHISVFLGTLGTCYSLVDYGGLDIAELVKDMPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLA 660
            E L+  MKKYG++AA FH S+F  T G  Y ++   G+D+   +  +P++      A AG+LA AY  T A GP R +LT+T TP +AR LA
Sbjct:    3 EQLRVVMKKYGKIAAAFHASMFAATFGASYGVIR-SGVDVETFLDRIPMVDARKVDASAGSLACAYIATLATGPARGLLTITATPMLARLLA 93
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BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Match: A0A2R5GG24_9STRA (DUF1279 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG24_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.690e-5
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:  376 VTAEYLKRFMKKYGRVAATFHISVFLGTLGTCYSLVD---YGGLDIAELVKDMPIL----ADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGREERRREGEGGAT 702
            V    +K  ++ +G VA   +  +++GTLG  Y LV+    G  D   ++K   +      D + P   GN A+A+ +T    PPR +L + VTPR+AR + G   R+R+ +G A 
Sbjct:  225 VPVSRIKALIRDFGPVAIGVYGGIYVGTLGLLYGLVEADIVGAGDAISVLKSTGLNHFVDMDKINPR-MGNFAVAWILTKFTEPPRLLLALAVTPRVARAI-GWAPRKRDKDGNAV 338
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6712.17606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFS1_ECTSI4.470e-12783.12DUF1279 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A024GJM7_9STRA7.640e-1543.48DUF1279 domain-containing protein n=2 Tax=Albugo c... [more]
A0A2R5GG24_9STRA3.690e-531.90DUF1279 domain-containing protein n=1 Tax=Hondaea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6712contigEcto-sp13_S_contig6712:1771..3315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score375.9
Seed ortholog evalue1.3e-101
Seed eggNOG ortholog2880.D8LFS1
Model size711
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.Protein of unknown function (DUF1279)
EggNOG OGs2D0X6@1,2S4UH@2759
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-01_001150.1
Cds size711
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.0468328-CDS-Ecto-sp13_S_contig6712:1770..22111681463923.0468328-CDS-Ecto-sp13_S_contig6712:1770..2211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 1771..2211 -
1681463923.0634408-CDS-Ecto-sp13_S_contig6712:2854..31011681463923.0634408-CDS-Ecto-sp13_S_contig6712:2854..3101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 2855..3101 -
1681463923.074219-CDS-Ecto-sp13_S_contig6712:3292..33151681463923.074219-CDS-Ecto-sp13_S_contig6712:3292..3315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 3293..3315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6712.17606.1prot_Ecto-sp13_S_contig6712.17606.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6712 1771..3315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6712.17606.1

>prot_Ecto-sp13_S_contig6712.17606.1 ID=prot_Ecto-sp13_S_contig6712.17606.1|Name=mRNA_Ecto-sp13_S_contig6712.17606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MMIYSSFRHSARVGCRRSMCPAALTTVGCRQQQPPGESRASAAFSNRPAL
QRRTLSSSARHIGMGSSPRFMSKHPGFGSRYHSIHHGVEKDTPPPPPKTA
PPATMTAVASKASTLADRWKSARSKVTAEYLKRFMKKYGRVAATFHISVF
LGTLGTCYSLVDYGGLDIAELVKDMPILADNLPPAGAGNLAIAYGMTSAI
GPPRAVLTVTVTPRIARFLAGREERRREGEGGATPP*
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mRNA from alignment at Ecto-sp13_S_contig6712:1771..3315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6712.17606.1 ID=mRNA_Ecto-sp13_S_contig6712.17606.1|Name=mRNA_Ecto-sp13_S_contig6712.17606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1545bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6712:1771..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATCTACAGCAGCTTCAGGTGATAATCCAAGGGTTAACAAGCGTC
CGCTCCGTACCTCCCATCCTCGCAAAGCGTCAAATTTGTACCCACACGAA
TGCACTGGCTCTCTCGCGTCCTTGTCATCAGTGTCAGAGGGACCGGCGAT
TTTCACTCGGATCCCCCCGCCGACCTTTGTGTGCTGCTCTTGCCCTTGCG
TTGCCACACACCAGACACTCGGCACGGGTCGGGTGTCGGCGATCGATGTG
CCCGGCTGCTCTAACAACAGTGGGGTGCAGACAGCAGCAGCCGCCAGGCG
AAAGCCGAGCGTCAGCAGCTTTCAGCAACAGGCCCGCCCTGCAGCGCCGT
ACGCTCAGCAGTAGCGCTCGTCACATCGGCATGGGATCGTCGCCAAGGTT
CATGTCCAAGCACCCAGGGTTTGGCAGCCGTTATCACTCGATTCACCATG
GAGTTGAAAAGGTGCGTCATGTACCATGTACTTCGTATATGGTAGATGCA
CGATTAACTGGCTGTACGCTACGTACGTTTCGGCCGTCACGTACTTCAGG
TTTTGAATCTTCTCGAACATCTCCGTTCCAACGGGCGCGTGACTCAGCCA
TCTTCACGTTCTCATCCTATCTTGTGCGCATGTCATCTTGACGATAGATT
GACCCGGGGAATTTTTTTTTGGTGGATTAAGAGGTAGGGCCTGCAGAATT
GTGGCGTGTGGAGTTTGCGCAGCAGGTGGGAGTGAACTTCACCCCGCGGG
TGTGTGTAGTCTGCGCTTGTTGGGGCGCACTGCCCGATTTTTGTGACTCA
GCCAACCCTCAACCAGCAGCAGTTTTTTGTCTACTGCCCGTCGACGACGA
CAAAGTTGCACCCTGTCCCAATGTGCTGTGGCGAAGCTCCATGCGCATGC
CCAGTCGGTTGTTGCTAAGTGGGTGCGAGCAGTTTCGTCCACCGGCTGCT
GCAAAGCAGCCGCCAACAAATCTTGGCGGACCTGACACCTTTTTTTCCAA
GTGCGAAACGGCCGTCTGGTATGTGTGACCTCTCCCACAACCTCCGTGCT
CAAAGACCACATTTTCCCGCTGAGCGCAAGTTCCCCCCGTCTTCCCTCCT
ACAGGATACGCCGCCTCCACCACCAAAAACAGCACCACCGGCAACAATGA
CAGCAGTTGCCTCCAAGGCTTCGACGCTGGCCGACAGGTGGAAGTCAGCC
CGAAGCAAGGTCACCGCGGAGTACCTGAAGCGCTTCATGAAGAAGTACGG
CCGCGTGGCCGCCACGTTCCACATCTCCGTCTTTCTCGGCACCCTCGGCA
CCTGCTACTCCCTGGTCGACTACGGCGGCCTCGACATCGCGGAGCTCGTC
AAGGACATGCCCATCCTCGCGGACAACCTCCCTCCCGCCGGCGCCGGCAA
CCTGGCCATAGCGTACGGGATGACCAGCGCGATCGGTCCCCCCCGGGCGG
TGTTGACCGTGACGGTGACGCCGCGGATAGCCAGGTTCTTGGCGGGGCGA
GAGGAGCGGAGAAGGGAGGGGGAGGGAGGGGCGACGCCTCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6712:1771..3315-

>mRNA_Ecto-sp13_S_contig6712.17606.1 ID=mRNA_Ecto-sp13_S_contig6712.17606.1|Name=mRNA_Ecto-sp13_S_contig6712.17606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6712:1771..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATCTACAGCAGCTTCAGACACTCGGCACGGGTCGGGTGTCGGCG
ATCGATGTGCCCGGCTGCTCTAACAACAGTGGGGTGCAGACAGCAGCAGC
CGCCAGGCGAAAGCCGAGCGTCAGCAGCTTTCAGCAACAGGCCCGCCCTG
CAGCGCCGTACGCTCAGCAGTAGCGCTCGTCACATCGGCATGGGATCGTC
GCCAAGGTTCATGTCCAAGCACCCAGGGTTTGGCAGCCGTTATCACTCGA
TTCACCATGGAGTTGAAAAGGATACGCCGCCTCCACCACCAAAAACAGCA
CCACCGGCAACAATGACAGCAGTTGCCTCCAAGGCTTCGACGCTGGCCGA
CAGGTGGAAGTCAGCCCGAAGCAAGGTCACCGCGGAGTACCTGAAGCGCT
TCATGAAGAAGTACGGCCGCGTGGCCGCCACGTTCCACATCTCCGTCTTT
CTCGGCACCCTCGGCACCTGCTACTCCCTGGTCGACTACGGCGGCCTCGA
CATCGCGGAGCTCGTCAAGGACATGCCCATCCTCGCGGACAACCTCCCTC
CCGCCGGCGCCGGCAACCTGGCCATAGCGTACGGGATGACCAGCGCGATC
GGTCCCCCCCGGGCGGTGTTGACCGTGACGGTGACGCCGCGGATAGCCAG
GTTCTTGGCGGGGCGAGAGGAGCGGAGAAGGGAGGGGGAGGGAGGGGCGA
CGCCTCCTTGA
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