mRNA_Ecto-sp13_S_contig6710.17605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6710.17605.1
Unique NamemRNA_Ecto-sp13_S_contig6710.17605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6710.17605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6710contigEcto-sp13_S_contig6710:1816..3833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.0010529-CDS-Ecto-sp13_S_contig6710:1815..18941681463923.0010529-CDS-Ecto-sp13_S_contig6710:1815..1894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6710 1816..1894 +
1681463923.011943-CDS-Ecto-sp13_S_contig6710:3644..38321681463923.011943-CDS-Ecto-sp13_S_contig6710:3644..3832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6710 3645..3832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6710.17605.1prot_Ecto-sp13_S_contig6710.17605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6710 1816..3832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6710.17605.1

>prot_Ecto-sp13_S_contig6710.17605.1 ID=prot_Ecto-sp13_S_contig6710.17605.1|Name=mRNA_Ecto-sp13_S_contig6710.17605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
SSSVTCLQSLSRAPPSGWRRTSPRHLGGVRNESDAGGSRRRLTRMTAMKA
KSAGYAGGNQSGFRATTSQWEVEGQLRRISKENSTLRKQ
back to top

mRNA from alignment at Ecto-sp13_S_contig6710:1816..3833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6710.17605.1 ID=mRNA_Ecto-sp13_S_contig6710.17605.1|Name=mRNA_Ecto-sp13_S_contig6710.17605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2018bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6710:1816..3833+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCGAGTGTAACCTGTTTGCAAAGCCTTTCGCGGGCACCACCGAGTGG
ATGGCGGCGCACTTCGCCAAGACACCTAGGTACGGCATCGCTAAGTGCCC
CAACACCACCAAAACCCTAACCCCGGGGATGGGGCACTTTCGTCCCCTTG
CGGTAGCCGTAATTACCCGTACGTGATGTCAATCGCTGATTTCCTGTTAT
TACGGGTGCGTAACGTGGAAAGTCTCCCGTTGTACACATCCCTGATAATA
TGACCATGGTCGAACGAACGGAAGAATCAACCAGCTTCTAAGGGACCCTC
GAGTGACGTTGCCAACCGCTGTGTCCTTCGACCGATGCAACCAACCGGAA
GCGTTGTATGCTCTGTGCCACTCCCCCACTCCCCAGACACACATGGCTTG
CCAGGTCCGCAAAAAATGGTACCTTTGCTCCCTGCTCCATGGTAGAGGAC
GCGGGTGCGTGATTGAGTGATCGGAACGGAAATTAATCCAATTCCACGCG
GAAAGTAACGGCAAAACGAACGTTTCTCGTCCAGATCAGCCTATCTGTAT
GGTCATAGTGTAGTTTGTCCATGGTCATACGGTTCATCATGGCTCGTCGA
ACCGACCCAGCTGACCCCTCTCCTCGTCCAATCTGGGTCGTTGATGGTCG
CGATGGGTTTGGTATTATTGTGGTTTTCATTTCGACTCCCCCCTGCCAAC
ACCGAGGAGTAGGGCAAATCCATCGTTCAGGTAGTTGCTGTCCATCAAAC
AATCCCCCACTTGACCTACCCATCGCAGCTCTGAAAGGAAGCGAACAACA
ATCAATGGATGCCAACCCAAGCATTTGAAGGTGTGAAGGAGCGCACGGTT
CAATGTAAATTCTCTCTCGTAGTGTAGTGGTTATCACACCAGCCTTTGAA
GCTGGTACCCCGAGTTCGAATCTCGGCGAGAGATTTTTACTCATCTTGCT
TATATTTTGCTCGGTCACACAGCAACAGAGAGAGGCTGAGTGATCGCGCC
GGCAACTTGCAACCTTCTGACGTTACGTGGTTAACAGTGGAGTCACATGG
ACCAGGATTTAGCTTCGCAGAAAAGTATGGAGTGTTATTACTTTCGTTCG
TGCGCCAAAATTCAACTTCACGGCCGACGAGGGAAAGGAACAACTGAATC
CTTCTCGCACTTAGGAACACCGCGAGCACCGCACATGGAAGGAGAAAAAT
ACCCCTCCTGTGCGGTTTTCCATTCCTCCTGTGTGGCCCCACCGGATGGC
GTGTCAATAATTTTACCGAAAGGGGTAAGCCGACGTGCAAAATAAAAGGG
GTGAAAGACAAAAAAAAAAATCCGCGATTGCGGATGTCGGGTCCGCATGC
ATGAATGCCTCGTTGGGGTCGAGTGCAACAAGAAATGCAAGCACGGTGTT
GTTCAGAATGCACCTCCAACGTTTTGAGTTTCAAAACTTCTATTAGTCGT
GCTGAGTGGCGAAAGAAACGGGTAGAGGGTACCGGTTGTACACGGCGATT
GAGAATCATGACGTTCTCCACAGCGCATACTCTCGAAATACGTCGTACTT
GAACCCACACCTACCGAGCCTTTCTCGGAGAAGGACAGCACCTCTTCACG
CGAATAGATTGACCGAGGCATGTGGGAAGGGCGGGACGACGACGGAGATG
TGGTGCTCCCCAGCTTGCTCGAAAGCTACCACGGTAGCTTCGAGAGCACT
GACTTCTTCCCCCGGACTATTACCGACGGGCCCGTCAAGAGACTTTTCGA
CGCCGCGGTGCTTGCTTTCACCTTCGCCGGCAAGGTGCATGACTGCTACC
GATCTCGACGTTACCCTCGGCCGCCTCAGGGGGCGTGAGGAACGAGAGCG
ACGCCGGAGGTAGCCGGCGGAGGTTGACGAGGATGACCGCCATGAAGGCG
AAGAGTGCGGGGTACGCCGGAGGCAACCAGTCGGGCTTTCGCGCCACCAC
CTCCCAGTGGGAAGTCGAGGGGCAGCTTCGACGAATTTCGAAAGAAAACT
CTACGCTGAGAAAGCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6710:1816..3833+

>mRNA_Ecto-sp13_S_contig6710.17605.1 ID=mRNA_Ecto-sp13_S_contig6710.17605.1|Name=mRNA_Ecto-sp13_S_contig6710.17605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6710:1816..3833+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCGAGTGTAACCTGTTTGCAAAGCCTTTCGCGGGCACCACCGAGTGG
ATGGCGGCGCACTTCGCCAAGACACCTAGGGGGCGTGAGGAACGAGAGCG
ACGCCGGAGGTAGCCGGCGGAGGTTGACGAGGATGACCGCCATGAAGGCG
AAGAGTGCGGGGTACGCCGGAGGCAACCAGTCGGGCTTTCGCGCCACCAC
CTCCCAGTGGGAAGTCGAGGGGCAGCTTCGACGAATTTCGAAAGAAAACT
CTACGCTGAGAAAGCAG
back to top