mRNA_Ecto-sp13_S_contig671.17604.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig671.17604.1
Unique NamemRNA_Ecto-sp13_S_contig671.17604.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig671.17604.1 vs. uniprot
Match: A0A6H5JXF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF6_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 5.880e-83
Identity = 142/193 (73.58%), Postives = 148/193 (76.68%), Query Frame = 2 
Query:  170 HVNLPETFFVKGTMPDVALPRPQLLQAGFTMDQINNALHGWQLLSNAMVREIDQPLIGRWKSPREAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELDNIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLSYAAKLARGDLMRVTGTRYNTLCSQREAEKSHMRAAGQAFIAADGAG 748
            ++NLPETFF KGTMPDVALPRPQLLQAGFTMDQINNALHGWQLLSNAMV                                    FHRFERYQVDVKVDPNVALREL+NIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAK NLS A +L RG+LMRVTGTRYNTLCSQREAEKSH RA  QAF+ ADGAG
Sbjct:   51 YMNLPETFFGKGTMPDVALPRPQLLQAGFTMDQINNALHGWQLLSNAMV------------------------------------FHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKVNLSSAERLTRGNLMRVTGTRYNTLCSQREAEKSHTRAEEQAFVTADGAG 207
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BLAST of mRNA_Ecto-sp13_S_contig671.17604.1 vs. uniprot
Match: A0A6H5K9V8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V8_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.120e-72
Identity = 120/130 (92.31%), Postives = 122/130 (93.85%), Query Frame = 2 
Query:  362 EAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELDNIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLSYAAKLARGDLMRVTGTRYNTLCSQREAEKSHMRAAGQAFIAADGAGK 751
            +AMETLDAVYKPETQGEAQQLFHRFERYQVDV VDPNVALREL+NIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLS A KL RGDLMRVTGTRYNTLCSQREAEKSH RAA QAF  ADGAGK
Sbjct:   18 DAMETLDAVYKPETQGEAQQLFHRFERYQVDVMVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLSSAEKLTRGDLMRVTGTRYNTLCSQREAEKSHTRAAEQAFFTADGAGK 147
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BLAST of mRNA_Ecto-sp13_S_contig671.17604.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.310e-33
Identity = 76/194 (39.18%), Postives = 111/194 (57.22%), Query Frame = 2 
Query:  173 VNLPETFFVKGTMPDVALPRPQLLQAGFTMDQINNALHGWQLLSNAMVREIDQPLIGRWKSPREAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELDNIRDMIQECGGAALDDRFVFTRFVNALPQ-EYEVAKENLSYAAKLARGDLMRVTGTRYNTLCSQREAEKSHMRAAGQAFIAADGAGK 751
            +++ + F   G +PD+  P+  LL+ GF+   I      W  LS A+  E D+ ++ R  +PREA+  LDA Y PETQG  QQLF  F++YQ   K +P  +L +L  +  M+Q+ GGA ++D+FVF R +++LP  EYEV K+ LS    L R  L++   TR+N L  +   E        QA+IA DG GK
Sbjct:   47 LDIGDVFSGGGVLPDINKPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLNKLMGMAIMMQQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDILVQQLSTRFNLLTEEWRKEGEKGSGGEQAYIAGDGTGK 240
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BLAST of mRNA_Ecto-sp13_S_contig671.17604.1 vs. uniprot
Match: A0A6H5KFR9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.390e-20
Identity = 54/87 (62.07%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  775 RKGNSNGXXXXXXXXXXXAEKRARVRCFRCRKMGHRIAECPTKESDIIXXXXXXXXXXXXXXXXXXEEKTVIAVEMSQDELDVACEA 1035
            RKGNS+G           AEKRARVRCFRC KMGHRIAECPTKESDII                  EEK VIAVEMSQDELD+ACEA
Sbjct:  131 RKGNSDGKGNGDESGGGGAEKRARVRCFRCGKMGHRIAECPTKESDIIRCEVCKGFGHKKDRCTMEEEKAVIAVEMSQDELDIACEA 217
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BLAST of mRNA_Ecto-sp13_S_contig671.17604.1 vs. uniprot
Match: A0A6H5JT13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT13_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.480e-18
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 3 
Query:   18 VTAGSDDAVEWGETVGGSRKTTSFRVRVPQFKGEKHQYPGWKMDLSRFINYMS 176
            + AGSD AVEWGET  GS KTTSFR  VPQFKGEKHQYPGW MD SRFINYM+
Sbjct:  112 MAAGSDGAVEWGETAVGSGKTTSFRESVPQFKGEKHQYPGWNMDFSRFINYMN 164
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BLAST of mRNA_Ecto-sp13_S_contig671.17604.1 vs. uniprot
Match: A0A6H5K0U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.310e-11
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  832 EKRARVRCFRCRKMGHRIAECPTKESDIIXXXXXXXXXXXXXXXXXXEEKTVIAVEMSQDELD 1020
            EKRARVRCFRC KMG RIAECPTKESD+I                  EE+ VIA EMSQDELD
Sbjct:  152 EKRARVRCFRCGKMGRRIAECPTKESDVIRYEVCTGFGHKKDRCPMEEEEAVIAAEMSQDELD 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig671.17604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JXF6_9PHAE5.880e-8373.58CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9V8_9PHAE2.120e-7292.31CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J624_9PHAE1.310e-3339.18CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KFR9_9PHAE2.390e-2062.07CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JT13_9PHAE5.480e-1879.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0U0_9PHAE1.310e-1161.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig671contigEcto-sp13_S_contig671:20073..21345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1273
Hectar predicted targeting categoryother localisation
Exons1
Cds size906
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463922.794478-UTR-Ecto-sp13_S_contig671:20072..201181681463922.794478-UTR-Ecto-sp13_S_contig671:20072..20118Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig671 20073..20118 +
1681463922.81569-UTR-Ecto-sp13_S_contig671:21024..213451681463922.81569-UTR-Ecto-sp13_S_contig671:21024..21345Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig671 21025..21345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463922.805359-CDS-Ecto-sp13_S_contig671:20118..210241681463922.805359-CDS-Ecto-sp13_S_contig671:20118..21024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig671 20119..21024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig671.17604.1prot_Ecto-sp13_S_contig671.17604.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig671 20119..21024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig671.17604.1

>prot_Ecto-sp13_S_contig671.17604.1 ID=prot_Ecto-sp13_S_contig671.17604.1|Name=mRNA_Ecto-sp13_S_contig671.17604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
MGRDSGGVKEDYVVSRTRPAVQGRKASVPRVEDGLKPLHQLHVNLPETFF
VKGTMPDVALPRPQLLQAGFTMDQINNALHGWQLLSNAMVREIDQPLIGR
WKSPREAMETLDAVYKPETQGEAQQLFHRFERYQVDVKVDPNVALRELDN
IRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLSYAAKLARGDLMR
VTGTRYNTLCSQREAEKSHMRAAGQAFIAADGAGKGEGRNRSAARETATA
KATATRAVGAGRRNGHASGASDAERWGIGLRNAQQRKATLSGARFARDSA
T*
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mRNA from alignment at Ecto-sp13_S_contig671:20073..21345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig671.17604.1 ID=mRNA_Ecto-sp13_S_contig671.17604.1|Name=mRNA_Ecto-sp13_S_contig671.17604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig671:20073..21345+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCCCAAGGAGGTGAGTGACCGCCGGTAGCGATGATGCTGTTGAATGG
GGCGAGACAGTGGGGGGGTCAAGGAAGACTACGTCGTTTCGCGTACGCGT
CCCGCAGTTCAAGGGCGAAAAGCATCAGTACCCCGGGTGGAAGATGGACT
TAAGCCGCTTCATCAACTACATGTCAACCTACCCGAGACTTTCTTCGTGA
AAGGGACAATGCCAGATGTAGCACTGCCGCGACCCCAACTTCTGCAGGCA
GGATTCACCATGGACCAGATCAACAACGCCCTACACGGGTGGCAACTCCT
TTCAAACGCGATGGTACGTGAGATTGACCAACCGCTTATCGGAAGGTGGA
AGTCCCCCCGAGAGGCCATGGAGACGCTCGACGCCGTCTACAAACCCGAA
ACGCAGGGAGAAGCACAACAGCTTTTTCACCGGTTTGAGCGGTACCAGGT
CGACGTGAAGGTCGATCCGAACGTGGCACTGCGTGAGTTGGACAACATCC
GCGACATGATCCAGGAATGCGGGGGCGCCGCCCTCGATGACCGGTTCGTG
TTCACACGCTTCGTGAATGCCCTTCCCCAAGAGTACGAGGTCGCAAAAGA
GAACCTCTCATACGCTGCGAAGCTAGCGAGGGGGGACCTCATGCGCGTGA
CGGGAACTCGCTACAACACGCTCTGCAGCCAGCGGGAGGCGGAGAAGAGC
CACATGAGGGCAGCGGGACAGGCTTTCATCGCAGCCGACGGCGCTGGGAA
GGGGGAAGGGCGCAACCGCTCCGCCGCAAGGGAAACAGCAACGGCAAAGG
CAACGGCAACGAGAGCGGTGGGGGCGGGGCGGAGAAACGGGCACGCGTCC
GGTGCTTCCGATGCAGAAAGATGGGGCATCGGATTGCGGAATGCCCAACA
AAGGAAAGCGACATTATCCGGTGCGAGGTTTGCACGGGATTCGGCCACAT
GAAGGACCGTTGCCCAATGGAAGAAGAGAAAACGGTAATAGCGGTCGAAA
TGTCGCAGGATGAGCTAGACGTTGCGTGCGAAGCCTCGTAAGGTCGGGAA
CCAACCATACCCAGCCCCAACACTCCACGCTCCTAGATGTAGGGGGGGCG
ACGTGAGTTCTTGAAACTGTGCTTTCCAGATGTAGGGGAAGGTACTGACA
CTGACACGCACCCCCAGTCGAAGGGGGGGTAGCGCAAAATTTCGTAGGTG
TGCTCTCCAGATGTAGGGGATGGTACTAACACGCACCCTCAGATATAGGG
GGGGTAGCGCAAATATTTCACAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig671:20073..21345+

>mRNA_Ecto-sp13_S_contig671.17604.1 ID=mRNA_Ecto-sp13_S_contig671.17604.1|Name=mRNA_Ecto-sp13_S_contig671.17604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig671:20073..21345+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCGAGACAGTGGGGGGGTCAAGGAAGACTACGTCGTTTCGCGTAC
GCGTCCCGCAGTTCAAGGGCGAAAAGCATCAGTACCCCGGGTGGAAGATG
GACTTAAGCCGCTTCATCAACTACATGTCAACCTACCCGAGACTTTCTTC
GTGAAAGGGACAATGCCAGATGTAGCACTGCCGCGACCCCAACTTCTGCA
GGCAGGATTCACCATGGACCAGATCAACAACGCCCTACACGGGTGGCAAC
TCCTTTCAAACGCGATGGTACGTGAGATTGACCAACCGCTTATCGGAAGG
TGGAAGTCCCCCCGAGAGGCCATGGAGACGCTCGACGCCGTCTACAAACC
CGAAACGCAGGGAGAAGCACAACAGCTTTTTCACCGGTTTGAGCGGTACC
AGGTCGACGTGAAGGTCGATCCGAACGTGGCACTGCGTGAGTTGGACAAC
ATCCGCGACATGATCCAGGAATGCGGGGGCGCCGCCCTCGATGACCGGTT
CGTGTTCACACGCTTCGTGAATGCCCTTCCCCAAGAGTACGAGGTCGCAA
AAGAGAACCTCTCATACGCTGCGAAGCTAGCGAGGGGGGACCTCATGCGC
GTGACGGGAACTCGCTACAACACGCTCTGCAGCCAGCGGGAGGCGGAGAA
GAGCCACATGAGGGCAGCGGGACAGGCTTTCATCGCAGCCGACGGCGCTG
GGAAGGGGGAAGGGCGCAACCGCTCCGCCGCAAGGGAAACAGCAACGGCA
AAGGCAACGGCAACGAGAGCGGTGGGGGCGGGGCGGAGAAACGGGCACGC
GTCCGGTGCTTCCGATGCAGAAAGATGGGGCATCGGATTGCGGAATGCCC
AACAAAGGAAAGCGACATTATCCGGTGCGAGGTTTGCACGGGATTCGGCC
ACATGA
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