mRNA_Ecto-sp13_S_contig6708.17599.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI) HSP 1 Score: 575 bits (1483), Expect = 1.980e-196 Identity = 295/322 (91.61%), Postives = 303/322 (94.10%), Query Frame = 1
Query: 1 MSGNNFSVVVRGAMVPGAAVKSSLEEACSNGFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLILPAGDCAATEENGEMSPAFPGAVLAATEDSLPSSCAARAPAAREDGETEETCPGRRVDGLLSSATAAVGDGAKGSGREAGDGHTGRESAGSSSVASGRGRGLVTVLTSEAIQAFASEGVTPRDLLRRVVLPLAGTSIQYPLHQVGMIH 966
+SGN FSVVVRG MVPGAAVKSSLEEACSNGFINF+GTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAA KKIL PRDNDPPFLHSALAEF EGKITAKDCAARVRGRNRLSTERLVL GLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACAR+RLLGSEAVPGDL+LPA C ATEE GEMSPAF GAV A TEDSLPSSCAARAPAAREDGETEETCPGR V+GLLSS TAAVGDGAKGSG EAGDGHTGRESAGSSSVASGRGRGLVT LTSE IQAFASEGVTPRDLLRRVVLPLAGTSIQYPLHQ+G ++
Sbjct: 449 LSGNKFSVVVRGVMVPGAAVKSSLEEACSNGFINFYGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAVKKILQPRDNDPPFLHSALAEFFEGKITAKDCAARVRGRNRLSTERLVLQGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARIRLLGSEAVPGDLVLPADVCTATEEIGEMSPAFTGAVSAGTEDSLPSSCAARAPAAREDGETEETCPGRHVNGLLSSTTAAVGDGAKGSGHEAGDGHTGRESAGSSSVASGRGRGLVTALTSETIQAFASEGVTPRDLLRRVVLPLAGTSIQYPLHQIGSMY 770
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: A0A662WDA6_9STRA (TRUD domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDA6_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.580e-26 Identity = 74/192 (38.54%), Postives = 108/192 (56.25%), Query Frame = 1
Query: 7 GNNFSVVVR--------GAMVPGAAVKSSLEEACSNGFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLILPAGDCAATEEN 558
GN F++ +R + +KS+LE GF+N+FG QRVG P +A R P+ IG ++AG WE AA+ +L P D D A +LE + + A ++ + +S ER VL GL R+GA AF+ A++ VPF R M++HAYQS+++N +A R+R G++ V GDLI C A EN
Sbjct: 393 GNRFAITIRELSCKVESSTATIRSTLKSALESVKHRGFVNYFGFQRVGLPSSAVR----PHHIGEKIIAGKWEEAARLLLAPDDCDSEIGARAKRIYLETQDV--EAALKLMPFS-MSAERHVLQGLKRFGADAFEQAVKTVPFSRRVMFMHAYQSYLFNQMASFRLRHYGAKLVAGDLI----QCEAQGEN 573
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: D0MQV6_PHYIT (Pseudouridylate synthase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQV6_PHYIT) HSP 1 Score: 116 bits (290), Expect = 2.150e-25 Identity = 69/181 (38.12%), Postives = 97/181 (53.59%), Query Frame = 1
Query: 4 SGNNFSVVVRGAMVPGAA----VKSSLEEACSN----GFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLI 522
+GN FS+V+R ++SSLE A N GF+N+FG QRVG P R +QIG ++AG WE A K IL + D A +LE G +S ER +L GL R+G+ AF+ +Q +PF R M++HAYQS+++N +A R+R G++ V GDLI
Sbjct: 282 NGNRFSIVLRRLSAESECTAEMIRSSLESALDNIKCHGFVNYFGFQRVGMPSKTVRA----HQIGAKIIAGKWEEALKLILTVHEGDSDDAAQAKRHYLESGDVEAALKLMPHG---MSVERQLLQGLKRFGSDAFEQVVQSIPFSRRVMYMHAYQSYLFNRMASYRLRQYGAKIVAGDLI 455
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: A0A2D4CB79_PYTIN (TRUD domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CB79_PYTIN) HSP 1 Score: 117 bits (292), Expect = 2.850e-25 Identity = 67/177 (37.85%), Postives = 93/177 (52.54%), Query Frame = 1
Query: 4 SGNNFSVVVRGAMVPGAAVKSSLEEACSN----GFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLI 522
SGN F + VRG S+E GFIN++G QRVG P + R + IG+ ++A W A +L P D P + E + A AA G L ER VL GL R+G+ AF+AA++C+P+ R M++HAYQS+V+N +A +RV LG V GDL+
Sbjct: 1540 SGNRFQITVRGVKSTETTDADSIEHRVKRLKEQGFINYYGFQRVGMPTSTVR----QHHIGQLLVARKWREAVNMLLKPTAQDSPECSRVKTAYHEEGVDAA-LAALSPGTRGLQVERAVLQGLKRFGSEAFEAAVRCIPYSRRLMYLHAYQSYVFNVMASSRVSRLGHRVVAGDLV 1711
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: K3WGV5_GLOUD (TRUD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGV5_GLOUD) HSP 1 Score: 115 bits (289), Expect = 4.880e-25 Identity = 69/176 (39.20%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 4 SGNNFSVVVRGAMVPG---AAVKSSLEEACSNGFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLI 522
SGN F++ ++ +A+ + GFIN+FG QRVG P R P+ IG+ +LAG+WE A K I P +P + A +LE TA AA + +R++ ER +L G RYG AF AI V F R M++HAYQS+++N +A AR+RL G++ V GDL+
Sbjct: 364 SGNRFTISLQDVACESDAQSAISVGVVNVQRQGFINYFGFQRVGLPTNEVR----PHHIGQQILAGNWERAVKLIFIPSVKEPEAIAKAKRVYLE---TANVDAALGQMPSRMNLERSILQGFKRYGHDAFDRAIGNVSFSRRLMYMHAYQSYLFNRMASARLRLYGNKLVAGDLV 532
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: A0A662WXV6_9STRA (TRUD domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXV6_9STRA) HSP 1 Score: 115 bits (289), Expect = 5.450e-25 Identity = 70/180 (38.89%), Postives = 105/180 (58.33%), Query Frame = 1
Query: 7 GNNFSVVVRG----AMVPGAAVKSSLEEACSN----GFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLI 522
GN F++ +R A A ++S+LE A + GF+N+FG QRVG P +A R P+ IG ++AG WE A + +L P D A +LE + + A ++ + +S ER VL GL R+GA AF+ A++ VPF R M++HAYQS+++N +A R+R G++ V GDLI
Sbjct: 411 GNRFAITIRELSCKAETSTATIRSALESALESVKHRGFVNYFGFQRVGLPSSAVR----PHHIGEKIIAGKWEEATRLLLAPDGCDSEIGARAKRVYLETRDV--EAALKLMPFS-MSAERQVLQGLKRFGADAFEQAVKTVPFSRRVMFMHAYQSYLFNRMASFRLRHYGAKLVAGDLI 583
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: A0A329SV24_9STRA (TRUD domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SV24_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.180e-24 Identity = 68/181 (37.57%), Postives = 99/181 (54.70%), Query Frame = 1
Query: 4 SGNNFSVVVRG----AMVPGAAVKSSLEEACSN----GFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLI 522
+GN FS+V+RG A ++SSL+ A N GF N+FG QRVG P R + IG ++AG WE A + IL ++ D + A +LE G +S ER +L GL R+G+ AF+ +Q +PF R M++HAYQS+++N +A R+R G++ V GDLI
Sbjct: 347 NGNRFSIVLRGLSSEAECTPEMIRSSLDSALDNIKRQGFANYFGFQRVGLPTKTVRA----HHIGEKIIAGKWEEALRLILTVQEGDSDDVAKAKQHYLESVDAEGALKLMPHG---MSVERQLLQGLKRFGSDAFEQVVQSIPFSRRVMYMHAYQSYLFNRIASYRLRQYGTKLVEGDLI 520
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: UPI0009E433ED (pseudouridylate synthase 7 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E433ED) HSP 1 Score: 110 bits (276), Expect = 2.650e-23 Identity = 65/190 (34.21%), Postives = 103/190 (54.21%), Query Frame = 1
Query: 1 MSGNNFSVVVRGAMVPGAAVKSSLEEACSNGFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLILPAGDCAATEENGEMS 570
+SGN+F + +R + + SLE NGFIN+FG QR G+ ++IGR +L +W A +L PRD +P L +A ++ + AK R+ R + ++ +L GLVR+G S A+Q + R M+VHAYQS+VWNS+A R++ G + + GDL++ + AA + + S
Sbjct: 349 LSGNHFIITLRNVVGDHDKITESLESLKVNGFINYFGLQRFGTTSVPT------HKIGRALLLSNWSEAIDLLLAPRDGEPDDLKAA-RQYWKDTNDAKGTLKRMPKRKCIESD--LLQGLVRHGPSGLVNALQAISRNTRLMYVHAYQSYVWNSMASRRIKEYGLQPIKGDLVVASKSSAACSTDTDES 529
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: M4B463_HYAAE (TRUD domain-containing protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B463_HYAAE) HSP 1 Score: 110 bits (275), Expect = 3.050e-23 Identity = 72/182 (39.56%), Postives = 100/182 (54.95%), Query Frame = 1
Query: 4 SGNNFSVVVRGAM----VPGAAVKSSLEEACSN----GFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLE-GKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLI 522
+GN F++VV G P ++S LE A N GF N+FG QRVG P R + IG ++A WE A + IL R + A +LE G I A A ++ +S ER VL GL RYG+ AF+ A+Q +PF R M++HAYQS+++N +A R+R G++ V GDLI
Sbjct: 320 NGNRFAIVVWGLSSDTHCPAEMIRSILESALKNIEYHGFANYFGFQRVGLPTNTVRA----HHIGEKMIASKWEEALRLILAVRPAESEDAAKAKRHYLESGDIEA---ALKLMPLG-MSVERQVLQGLKRYGSDAFEQAVQSIPFSRRMMYMHAYQSYIFNRVASFRLRHYGTKVVEGDLI 493
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Match: A0A6A3MJS7_9STRA (TRUD domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MJS7_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.400e-23 Identity = 69/181 (38.12%), Postives = 98/181 (54.14%), Query Frame = 1
Query: 4 SGNNFSVVVRGA---MVPGA-AVKSSLEEACSN----GFINFFGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAAKKILHPRDNDPPFLHSALAEFLEGKITAKDCAARVRGRNRLSTERLVLHGLVRYGASAFQAAIQCVPFGMRTMWVHAYQSHVWNSLACARVRLLGSEAVPGDLI 522
SGN FS+V+RG M P + ++S+LE A N GF N+FG QRVG P R + IG ++A WE A + IL +D+D A +LE + G +S ER VL GL R+G+ AF+ A+ V F R M++HAYQS+++N + R+ G++ V GDLI
Sbjct: 356 SGNRFSIVIRGLSDEMEPSSKTIQSTLESALENIKHQGFANYFGFQRVGLPTNTVRA----HHIGEKIIASKWEEALRLILAAQDSDSEDGAKAKQLYLESRDVEAALKLMPHG---MSVERQVLQGLKRFGSDAFEQAVLSVSFSRRAMYMHAYQSYLFNRIVSLRLHKYGNKVVEGDLI 529 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6708.17599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6708.17599.1 >prot_Ecto-sp13_S_contig6708.17599.1 ID=prot_Ecto-sp13_S_contig6708.17599.1|Name=mRNA_Ecto-sp13_S_contig6708.17599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=322bp MSGNNFSVVVRGAMVPGAAVKSSLEEACSNGFINFFGTQRVGSPLAAARGback to top mRNA from alignment at Ecto-sp13_S_contig6708:4746..7242+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6708.17599.1 ID=mRNA_Ecto-sp13_S_contig6708.17599.1|Name=mRNA_Ecto-sp13_S_contig6708.17599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6708:4746..7242+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6708:4746..7242+ >mRNA_Ecto-sp13_S_contig6708.17599.1 ID=mRNA_Ecto-sp13_S_contig6708.17599.1|Name=mRNA_Ecto-sp13_S_contig6708.17599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6708:4746..7242+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |