mRNA_Ecto-sp13_S_contig6706.17598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6706.17598.1
Unique NamemRNA_Ecto-sp13_S_contig6706.17598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6706.17598.1 vs. uniprot
Match: D7FMW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW0_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 1.100e-86
Identity = 243/335 (72.54%), Postives = 255/335 (76.12%), Query Frame = 1 
Query:  640 MSNGETVRICHGICAMGEETGRQSSLRCDESSPSSPQPTKRDMQTKMRKRRPRDVQPIPRRSKRIRNKIAAAAAAISAPDAVVISDNPRTNDQINHDQVAAATGTPRSPMVSNTTTNCEGRKRGKLQDTEDEKHRGSSVGIGRASRRTNENMCSFNALGKQEVPRGSFFDEEKGFTRTELMKASGCTDDSTPYQMASAIGRPPSPMDEPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKLSTTTQPELLPAFLLAFLKDDLILDADGEEGWVMDAKEGKEMDAVEAVQDTVP 1644
            MSNGETVRI HGICAMGEETG Q SLR DESS  SPQPT+RDMQT+ RK RPRD QPIPRRSKRIRNKIAAAAAAISAPDAVVI+DN + NDQ N DQVAAA GTP SPM                                             + +GKQE P   FFDEE   TRTELM+   CTDDS PYQ+ASAIGRPPS M     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEG +STTTQP+LLPAFLLAFLKDDLILDADGEEGWVMDAKEGK MDAV+A+QDTVP
Sbjct:    1 MSNGETVRISHGICAMGEETGHQYSLRWDESSLPSPQPTERDMQTQKRKHRPRDAQPIPRRSKRIRNKIAAAAAAISAPDAVVINDNAKDNDQSNPDQVAAAIGTPWSPM---------------------------------------------HGIGKQEEPSDRFFDEENALTRTELMEVYRCTDDSKPYQVASAIGRPPSRMHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGNISTTTQPDLLPAFLLAFLKDDLILDADGEEGWVMDAKEGKVMDAVKAIQDTVP 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6706.17598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMW0_ECTSI1.100e-8672.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6706contigEcto-sp13_S_contig6706:2277..5370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1734
Hectar predicted targeting categoryother localisation
Exons5
Cds size1278
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6706.17598.1prot_Ecto-sp13_S_contig6706.17598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6706 2667..5304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463922.3994331-UTR-Ecto-sp13_S_contig6706:2276..26661681463922.3994331-UTR-Ecto-sp13_S_contig6706:2276..2666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6706 2277..2666 +
1681463922.4758549-UTR-Ecto-sp13_S_contig6706:5304..53701681463922.4758549-UTR-Ecto-sp13_S_contig6706:5304..5370Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6706 5305..5370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463922.4121895-CDS-Ecto-sp13_S_contig6706:2666..30261681463922.4121895-CDS-Ecto-sp13_S_contig6706:2666..3026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6706 2667..3026 +
1681463922.4336734-CDS-Ecto-sp13_S_contig6706:3755..41091681463922.4336734-CDS-Ecto-sp13_S_contig6706:3755..4109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6706 3756..4109 +
1681463922.4451594-CDS-Ecto-sp13_S_contig6706:4217..43701681463922.4451594-CDS-Ecto-sp13_S_contig6706:4217..4370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6706 4218..4370 +
1681463922.4566157-CDS-Ecto-sp13_S_contig6706:4623..47581681463922.4566157-CDS-Ecto-sp13_S_contig6706:4623..4758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6706 4624..4758 +
1681463922.4660287-CDS-Ecto-sp13_S_contig6706:5028..53041681463922.4660287-CDS-Ecto-sp13_S_contig6706:5028..5304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6706 5029..5304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6706.17598.1

>prot_Ecto-sp13_S_contig6706.17598.1 ID=prot_Ecto-sp13_S_contig6706.17598.1|Name=mRNA_Ecto-sp13_S_contig6706.17598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
MYITVKHPHRAMMNEVQEHDYAAAIQPKPPTNENTTSRTSITLTLVRVTH
TATSALSFPLFHLAQGSLGNSTPVSQSFEGVVKMSNGETVRICHGICAMG
EETGRQSSLRCDESSPSSPQPTKRDMQTKMRKRRPRDVQPIPRRSKRIRN
KIAAAAAAISAPDAVVISDNPRTNDQINHDQVAAATGTPRSPMVSNTTTN
CEGRKRGKLQDTEDEKHRGSSVGIGRASRRTNENMCSFNALGKQEVPRGS
FFDEEKGFTRTELMKASGCTDDSTPYQMASAIGRPPSPMDEPSVNFFDEK
KAPTPTELMEVSRCTDDSKSDQAASAIGMPLSPMQEPSDSCFDETTALTS
MDLMEASRCTDDEGKLSTTTQPELLPAFLLAFLKDDLILDADGEEGWVMD
AKEGKEMDAVEAVQDTVPCKTHGNI*
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mRNA from alignment at Ecto-sp13_S_contig6706:2277..5370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6706.17598.1 ID=mRNA_Ecto-sp13_S_contig6706.17598.1|Name=mRNA_Ecto-sp13_S_contig6706.17598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3094bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6706:2277..5370+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCTGGTTGATGGCCATATCGCGTATATTCATGGCCATATTACTTGGT
TATGATCATATATATCATCAAATATATATGATAATAAGTATGATCATGTA
ATGATCATGTAATGATCATATCGACATTTTTTGCATGTGAAGTCATATAT
CACATTGATATTTACTTATAACTTATTTTTGGAGGGTATATATATTTATT
ACATACCCCCCGTTGATTCCAGGTATACCCAACACTTTCTTCTACATCAC
AACTCGTATCCACCACCGGATGTTTACCAAAATGTGCAACTAACGGGACT
CGAACCACGTCTCCACTCTTTACAAATGCCGCAGTGAGTCCCATATGCAA
CTGCAGGTACGCAATCTAATGCCGTGAGAAAACCGAGTGAATGTATATAA
CAGTAAAACATCCCCACCGCGCCATGATGAATGAAGTACAAGAGCATGAT
TACGCTGCTGCTATCCAACCGAAGCCGCCCACAAATGAGAACACCACTTC
CCGTACAAGTATCACCCTTACCCTCGTGCGTGTCACACATACTGCAACCT
CTGCGCTTTCCTTCCCGCTTTTCCACCTGGCACAAGGTTCACTAGGAAAT
TCGACCCCGGTTTCTCAGAGCTTTGAGGGCGTTGTTAAGATGAGCAACGG
AGAAACTGTTCGAATTTGCCATGGCATCTGCGCGATGGGCGAGGAAACCG
GCCGTCAGTCATCGCTCCGCTGCGATGAGAGTTCGCCGTCTTCGCCACAG
GTAAAATCCTTTGTTGCTGGACGGATCGGGCACCGGGCTATTGCCAAGGT
TGGACACTTGAGGTTATTGTCCAGGTACGACACTCGCTTTCCCATTGACT
CTTCTGTAGGCTACATTGCTAACGCCGCGGCGACGTTGCAGGTGCAACTA
GACACAATGTGCCCCTGCATGGAAGTGATGCGACGAAACCTTGTGACTAT
TTCTTGCATGAACAACAGACCTAGACTTCGTAGCCACAGAGAGCCAGGGC
CTTTCTCGGCGACCAAGCCCCTTCTCATGGTCGCTCTCGGTGCTGGGCTC
CGCTCGTTTAGTCTGTCCTCTGTGGGATCTACAGTACACAGGTCGTGAAA
CACATTTTACTGTACATGGGATGCTGTTGCTTTAATCGGCGGCACATTCT
GGGCGCACCAGATTATCCTTGAGCACATACACCCGAAGACCGCCCCTCAC
GTTTACACCTTGGTGTGTTTCCCGTAGAACCAAGAGGCGAGAAGTGTCTC
ATCGCGATTTCCGTTCCTCAGTTGAAGGTGTCGCATGTATGGTAAGTGTA
CACTGTCCGGAGCCCAATTCAAATGTTCTCAAAGAGCGCTCTGCAGTGGT
TGCCTGAGGCTAAAGGTTGTGCAAGTTTGCGATCTGTACACAACGGGTCA
ATGGACGTACCTCCTCGTCCACCCGAAATGTTTCCTCTTCTCCCGTCATA
TGCGTCTGTCTCTGCAATCCTCGCTCCAGCCCACTAAACGCGACATGCAA
ACAAAAATGCGAAAGCGCCGCCCACGTGACGTCCAGCCCATACCGCGGAG
AAGCAAACGCATCAGGAACAAAATCGCGGCCGCAGCCGCGGCAATTTCAG
CCCCCGACGCCGTGGTCATTAGTGATAACCCCAGGACAAACGACCAGATC
AACCACGACCAAGTGGCAGCCGCGACTGGGACGCCTCGGTCACCGATGGT
AAGTAATACGACGACAAATTGTGAGGGCCGAAAGCGGGGAAAACTCCAAG
ATACAGAAGACGAAAAACATCGCGGCTCCTCAGTCGGCATCGGCCGTGCT
AGCCGGCGGACCAATGAGAATATGTGTTCGTTTGTGAAATGAAGTGGAAA
CAAGACACAGCAGTGGATCAAACTTGTCGGAGGTCGGACTGAATGTTGTT
TCGCTCTGTCTCTCTGTCTCTCTGTCTCTCCTCTTGAACAGAACGCTTTA
GGAAAGCAAGAAGTGCCGCGTGGCAGTTTCTTCGACGAGGAAAAGGGGTT
CACCCGAACAGAATTGATGAAAGCTTCCGGTTGTACCGATGATAGCACAC
CGTACCAAATGGCATCAGCGATTGGGAGGCCTCCGTCACCGATGGTAAGG
AACACAATTGAAATACTTCTAACATTTGTCCCCACTACGGTACGAAGGCG
GGCACTAAAAACAGGCATTAGACGACGACACGTGATTGATTAGTTGGCAT
CGACCACTCTGCAGTCTACAGAACAATCAAGAAACGTACACATACATAGA
GGGAATCAGGCTTACCGGAGGTCGGACTGAATGATCTCTCTGTCTCTCTC
TCTGTCCCGCTGTCCCTCTCGTTGAACGGCACGCTGTTGGAAAGCAGGAT
GAGCCTAGTGTGAATTTCTTCGACGAGAAAAAGGCGCCCACGCCAACGGA
GTTGATGGAAGTCTCCCGTTGTACCGACGATAGCAAATCAGACCAAGCGG
CATCAGCGATTGGGATGCCTCTGTCACCGATGGTAAGTAACAAGTCACCA
GTTATCGTTGTTTGGGCCCACCACTGCACAAAGACGGGCACTATGAACAC
AAAATAGACGGCAACAGCGTCGTGATTGATTTGACAGCAGCGACCGCTCT
ACAGTCTGTAGAAAAATGAAGAAAACGTACACCTACAGTACAAAGAGGGA
ATCAGGCTCATCGGAGGTTGGACTGAATTATCTGTCCGTCTGTCCGACTG
TCCGGCTGTCCGGCTCTGTATCCCTCTCGTTGAACGGCACGCTATTGGAA
AGCAAGAGCCGAGTGACAGTTGCTTCGACGAGACAACGGCGCTCACTTCA
ATGGACCTGATGGAAGCCTCCCGTTGTACCGATGACGAGGGAAAACTTTC
CACGACCACACAGCCGGAATTGCTCCCGGCCTTCCTTTTGGCCTTCCTAA
AAGACGACCTAATACTCGATGCCGACGGGGAAGAGGGCTGGGTGATGGAC
GCAAAGGAGGGCAAGGAGATGGACGCAGTAGAGGCCGTCCAAGACACGGT
GCCCTGCAAAACACACGGAAATATATAAACGCTATCTGTACGCCCGCCTG
CATGTCCGATGACGTGCCTGATGACGTGTCTGCTGAAGGAAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6706:2277..5370+

>mRNA_Ecto-sp13_S_contig6706.17598.1 ID=mRNA_Ecto-sp13_S_contig6706.17598.1|Name=mRNA_Ecto-sp13_S_contig6706.17598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6706:2277..5370+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATATAACAGTAAAACATCCCCACCGCGCCATGATGAATGAAGTACA
AGAGCATGATTACGCTGCTGCTATCCAACCGAAGCCGCCCACAAATGAGA
ACACCACTTCCCGTACAAGTATCACCCTTACCCTCGTGCGTGTCACACAT
ACTGCAACCTCTGCGCTTTCCTTCCCGCTTTTCCACCTGGCACAAGGTTC
ACTAGGAAATTCGACCCCGGTTTCTCAGAGCTTTGAGGGCGTTGTTAAGA
TGAGCAACGGAGAAACTGTTCGAATTTGCCATGGCATCTGCGCGATGGGC
GAGGAAACCGGCCGTCAGTCATCGCTCCGCTGCGATGAGAGTTCGCCGTC
TTCGCCACAGCCCACTAAACGCGACATGCAAACAAAAATGCGAAAGCGCC
GCCCACGTGACGTCCAGCCCATACCGCGGAGAAGCAAACGCATCAGGAAC
AAAATCGCGGCCGCAGCCGCGGCAATTTCAGCCCCCGACGCCGTGGTCAT
TAGTGATAACCCCAGGACAAACGACCAGATCAACCACGACCAAGTGGCAG
CCGCGACTGGGACGCCTCGGTCACCGATGGTAAGTAATACGACGACAAAT
TGTGAGGGCCGAAAGCGGGGAAAACTCCAAGATACAGAAGACGAAAAACA
TCGCGGCTCCTCAGTCGGCATCGGCCGTGCTAGCCGGCGGACCAATGAGA
ATATGTGTTCGTTTAACGCTTTAGGAAAGCAAGAAGTGCCGCGTGGCAGT
TTCTTCGACGAGGAAAAGGGGTTCACCCGAACAGAATTGATGAAAGCTTC
CGGTTGTACCGATGATAGCACACCGTACCAAATGGCATCAGCGATTGGGA
GGCCTCCGTCACCGATGGATGAGCCTAGTGTGAATTTCTTCGACGAGAAA
AAGGCGCCCACGCCAACGGAGTTGATGGAAGTCTCCCGTTGTACCGACGA
TAGCAAATCAGACCAAGCGGCATCAGCGATTGGGATGCCTCTGTCACCGA
TGCAAGAGCCGAGTGACAGTTGCTTCGACGAGACAACGGCGCTCACTTCA
ATGGACCTGATGGAAGCCTCCCGTTGTACCGATGACGAGGGAAAACTTTC
CACGACCACACAGCCGGAATTGCTCCCGGCCTTCCTTTTGGCCTTCCTAA
AAGACGACCTAATACTCGATGCCGACGGGGAAGAGGGCTGGGTGATGGAC
GCAAAGGAGGGCAAGGAGATGGACGCAGTAGAGGCCGTCCAAGACACGGT
GCCCTGCAAAACACACGGAAATATATAA
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