mRNA_Ecto-sp13_S_contig6701.17594.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6701.17594.1
Unique NamemRNA_Ecto-sp13_S_contig6701.17594.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6701.17594.1 vs. uniprot
Match: A0A6H5L7J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J5_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 8.660e-99
Identity = 174/188 (92.55%), Postives = 179/188 (95.21%), Query Frame = -2 
Query:    4 SVAGAGDMLASGSAAAGDGERSTAAARVQDPLVAGNGGDGLPPDSQARVPSSEGDAGTLVPGLASPSSSASPGRADGARATGGGRAKQLNEELDSVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRAARPVESWDERPILAIDQEGQAEDLADERTTKRAGVWCGATGGKWRQASSS 567
            SVAG GD+LASGSAAAGDGE+STAAARVQDPLVAGNGGDGLPPDSQA VPSSEGDAG LVPGLASPSS   PGRADGARATG GRAKQLNEELD+VLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRA+RPVESWDERPILAIDQEGQAEDLADERTTKRAGVWCGATG KWR+A SS
Sbjct: 1705 SVAGVGDILASGSAAAGDGEQSTAAARVQDPLVAGNGGDGLPPDSQAHVPSSEGDAGALVPGLASPSS---PGRADGARATGRGRAKQLNEELDAVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRASRPVESWDERPILAIDQEGQAEDLADERTTKRAGVWCGATGDKWRRAPSS 1889
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6701.17594.1 vs. uniprot
Match: D7FVB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB0_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 1.070e-95
Identity = 173/191 (90.58%), Postives = 177/191 (92.67%), Query Frame = -2 
Query:    4 SVAGAGDMLASGSAAAGDGERSTAAARVQDPLVAGNGGDGLPPDSQARVPSSEGDAGTLVPGLASPSSSASPGRADGAR---ATGGGRAKQLNEELDSVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRAARPVESWDERPILAIDQEGQAEDLADERTTKRAGVWCGATGGKWRQASSS 567
            SVAGAGDMLASGSAAAGDGE+STAAARVQDPLVAGNGGDGLPPDSQARVPS EGD+G LVPGLA PSS   PGRADGAR   ATG GRAKQ+NEELDSVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRAARPVESWDERPIL IDQEGQAEDLADERTTKRAG WCGATG KWR+A SS
Sbjct: 1428 SVAGAGDMLASGSAAAGDGEQSTAAARVQDPLVAGNGGDGLPPDSQARVPSYEGDSGALVPGLALPSS---PGRADGARGARATGRGRAKQVNEELDSVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRAARPVESWDERPILDIDQEGQAEDLADERTTKRAGAWCGATGDKWRRAPSS 1615
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6701.17594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7J5_9PHAE8.660e-9992.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVB0_ECTSI1.070e-9590.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6701contigEcto-sp13_S_contig6701:5735..6308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size576
Hectar predicted targeting categorymitochondrion
Exons1
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463921.9797926-CDS-Ecto-sp13_S_contig6701:5734..62381681463921.9797926-CDS-Ecto-sp13_S_contig6701:5734..6238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6701 5735..6238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463921.9896667-UTR-Ecto-sp13_S_contig6701:6238..63081681463921.9896667-UTR-Ecto-sp13_S_contig6701:6238..6308Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6701 6239..6308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6701.17594.1prot_Ecto-sp13_S_contig6701.17594.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6701 5735..6238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6701.17594.1

>prot_Ecto-sp13_S_contig6701.17594.1 ID=prot_Ecto-sp13_S_contig6701.17594.1|Name=mRNA_Ecto-sp13_S_contig6701.17594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
LAAGRLPPLAASRPAPHTRPLGRPFIREVLGLALLVDCQDRPLVPALHRS
GGTPHPPLLLRREHGDARVSRPRGRVRQEAYQVAFLPVAALPEDGVELLV
QLLRPAPARGSSTICPTRRRRGRRRGQSGHKRACITLRRRHTGLRVWRQT
IAAIAGDEWVLYAGSSG*
back to top

mRNA from alignment at Ecto-sp13_S_contig6701:5735..6308+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6701.17594.1 ID=mRNA_Ecto-sp13_S_contig6701.17594.1|Name=mRNA_Ecto-sp13_S_contig6701.17594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=574bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6701:5735..6308+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCTGCTGGACGCCTGCCGCCACTTGCCGCCAGTCGCCCCGCACCACA
CACCCGCCCTCTTGGTCGTCCTTTCATCCGCGAGGTCCTCGGCCTGGCCC
TCCTGGTCGATTGCCAAGATCGGCCGCTCGTCCCAGCTCTCCACCGGTCG
GGCGGCACGCCGCACCCGCCTCTTCTGCTCCGCAGGGAGCACGGGGACGC
GAGGGTTAGCCGGCCGCGCGGTAGGGTCCGCCAAGAAGCCTACCAAGTCG
CGTTTCTCCCCGTAGCTGCGCTTCCCGAGGACGGAGTCGAGCTCCTCGTT
CAGCTGCTTCGCCCTGCCCCCGCCCGTGGCTCTAGCACCATCTGCCCGAC
CAGGCGACGCCGAGGACGACGGCGAGGCCAGTCCGGGCACAAGCGTGCCT
GCATCACCCTCAGAAGAAGGCACACGGGCCTGAGAGTCTGGCGGCAAACC
ATCGCCGCCATTGCCGGCGACGAGTGGGTCTTGTACGCGGGCAGCAGCGG
TTGAACGTTCGCCGTCCCCGGCTGCCGCTGAACCGCTGGCCAACATGTCG
CCAGCGCCAGCTACAGAATCCTGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6701:5735..6308+

>mRNA_Ecto-sp13_S_contig6701.17594.1 ID=mRNA_Ecto-sp13_S_contig6701.17594.1|Name=mRNA_Ecto-sp13_S_contig6701.17594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6701:5735..6308+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCTGCTGGACGCCTGCCGCCACTTGCCGCCAGTCGCCCCGCACCACA
CACCCGCCCTCTTGGTCGTCCTTTCATCCGCGAGGTCCTCGGCCTGGCCC
TCCTGGTCGATTGCCAAGATCGGCCGCTCGTCCCAGCTCTCCACCGGTCG
GGCGGCACGCCGCACCCGCCTCTTCTGCTCCGCAGGGAGCACGGGGACGC
GAGGGTTAGCCGGCCGCGCGGTAGGGTCCGCCAAGAAGCCTACCAAGTCG
CGTTTCTCCCCGTAGCTGCGCTTCCCGAGGACGGAGTCGAGCTCCTCGTT
CAGCTGCTTCGCCCTGCCCCCGCCCGTGGCTCTAGCACCATCTGCCCGAC
CAGGCGACGCCGAGGACGACGGCGAGGCCAGTCCGGGCACAAGCGTGCCT
GCATCACCCTCAGAAGAAGGCACACGGGCCTGAGAGTCTGGCGGCAAACC
ATCGCCGCCATTGCCGGCGACGAGTGGGTCTTGTACGCGGGCAGCAGCGG
TTGA
back to top