mRNA_Ecto-sp13_S_contig670.17590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig670.17590.1
Unique NamemRNA_Ecto-sp13_S_contig670.17590.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig670.17590.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 2.170e-140
Identity = 298/331 (90.03%), Postives = 304/331 (91.84%), Query Frame = 3 
Query:  495 MMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALDYNTSPVAPSSSSLPTRPPPSGTTKPAAAEAPATEGSSSLTRNFAGLVSEGSKLQALSLRGNALEDAEAIALAEAIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLAGGYEVLPQEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGKGGALVGLLLRIVNARKEEAKEAGAXXXXXXXXGAVVLQELHLTRCQEYAEEAGGEDDTAIAAMSFALRPTKIVV 1487
            MMEALKRSSDVDTV+FHNAGLTGASIDVLVEGL HTTVRC ALDYNT PV  SSSS PTRPPPSG T+PA  EAPATEG SSLTRNFAGLVSEGSKL+ALSLRGNAL DAEAIALAEAIE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLLAGGYEVLP EQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLG+GGAL GLL RIVNARKEEA EAG         G+VVLQELHLTRCQ YAEEAGGEDDTAIAAMSFALRPTK+VV
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNTLPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig670.17590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI2.170e-14090.03Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig670contigEcto-sp13_S_contig670:1851..4861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score427.9
Seed ortholog evalue5.5e-117
Seed eggNOG ortholog2880.D7FT35
Model size1921
KEGG koko:K09257
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size1314
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig670.17590.1prot_Ecto-sp13_S_contig670.17590.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig670 2027..4430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463921.4434588-UTR-Ecto-sp13_S_contig670:1850..20261681463921.4434588-UTR-Ecto-sp13_S_contig670:1850..2026Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig670 1851..2026 +
1681463921.5221748-UTR-Ecto-sp13_S_contig670:4430..48611681463921.5221748-UTR-Ecto-sp13_S_contig670:4430..4861Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig670 4431..4861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463921.463687-CDS-Ecto-sp13_S_contig670:2026..21931681463921.463687-CDS-Ecto-sp13_S_contig670:2026..2193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig670 2027..2193 +
1681463921.4764266-CDS-Ecto-sp13_S_contig670:2464..28951681463921.4764266-CDS-Ecto-sp13_S_contig670:2464..2895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig670 2465..2895 +
1681463921.4931123-CDS-Ecto-sp13_S_contig670:3203..33391681463921.4931123-CDS-Ecto-sp13_S_contig670:3203..3339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig670 3204..3339 +
1681463921.5099916-CDS-Ecto-sp13_S_contig670:3850..44301681463921.5099916-CDS-Ecto-sp13_S_contig670:3850..4430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig670 3851..4430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig670.17590.1

>prot_Ecto-sp13_S_contig670.17590.1 ID=prot_Ecto-sp13_S_contig670.17590.1|Name=mRNA_Ecto-sp13_S_contig670.17590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=438bp
MVEAETLPSAVRTKMRHSDPWRATAMDGEAECLDWAAKDGQKPAGNFDAD
YVALCRLFEVPAHPCLASRLPGTTPNRDASAAAASKTTSSTIQLRNFAVD
LTTVRLMMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALD
YNTSPVAPSSSSLPTRPPPSGTTKPAAAEAPATEGSSSLTRNFAGLVSEG
SKLQALSLRGNALEDAEAIALAEAIEENTVLCSLNLFDNKITDVGASAFA
AILRINTVLRGLSLARNSLAPASAEAFGLLLAGGYEVLPQEQEKRAAADV
KIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSL
AALNLADNRDLGKGGALVGLLLRIVNARKEEAKEAGAGAGFGAGGGAVVL
QELHLTRCQEYAEEAGGEDDTAIAAMSFALRPTKIVV*
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mRNA from alignment at Ecto-sp13_S_contig670:1851..4861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig670.17590.1 ID=mRNA_Ecto-sp13_S_contig670.17590.1|Name=mRNA_Ecto-sp13_S_contig670.17590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3011bp|location=Sequence derived from alignment at Ecto-sp13_S_contig670:1851..4861+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGGAGATATGTAAACTTACTTATTCTACTCTCTGCACATACACTGGT
TAGCGCGGTCGATCCCATACCCTTCGAGATAGACACCGCGGGTCCACACT
TCGTACACACCCTGGATATTTTTCTTGTCCACCTTTTTCGGTTGTGCCTT
TTCAAAGCCGACCCCAGGCCGTACCAATGGTGGAGGCGGAGACGTTGCCC
TCTGCCGTGCGAACAAAGATGAGACACAGTGACCCCTGGCGAGCCACTGC
AATGGACGGGGAAGCTGAGTGCCTCGACTGGGCCGCAAAGGATGGGCAGA
AGCCCGCAGGAAACTTCGACGCTGACTACGTCGCTCTGTGTCGGTGTGTT
AACCACGGCGATGACACCCACCCTAACCGTTGTTGTAGCAACCGTCGTGG
AACTAGACACAACATTCCTACGAAGCAGAAGCGTAACTTAAATACACCAG
ACACACGTGTCCATCTTGCCAAGCAGTTGTGCTGTGGGTCTTCCGGCTGT
GTACATTTCCTCCATAGGTTGTCGTGTTTGAGTGCACTTCCCCACAGCTT
CACTCGTATCGTTCTTCCTCTTTTCCATGCCTTCCTTGCCTCCCTTGTCC
TCTCGCCCAACAAGACTTTTCGAGGTTCCAGCTCATCCATGCCTCGCGTC
ACGACTGCCGGGAACCACCCCAAATCGAGACGCCTCGGCAGCAGCAGCCT
CGAAAACAACATCGTCGACTATCCAACTCCGAAACTTTGCGGTGGATCTC
ACGACGGTACGCCTCATGATGGAGGCGCTCAAGAGATCCTCCGATGTCGA
TACAGTCAATTTCCACAACGCTGGCCTAACGGGAGCTTCCATTGATGTTC
TCGTAGAAGGCCTTCAACACACAACAGTTCGCTGTCTCGCCCTGGACTAC
AACACCTCGCCGGTGGCACCGTCGTCGTCGTCACTGCCCACGAGACCACC
CCCCTCAGGAACAACTAAGCCTGCAGCGGCGGAGGCGCCGGCGACCGAGG
GTTCTTCATCGTTGACTAGAAATTTTGCCGGCCTTGTCAGTGAAGGTGAG
GACCAGTGCTCACGATTTCATTTTTGTATGAGATTGTCTTGTAGGGAGTA
GCTTGCTCTAAGAGGGTACGATACTTGACCGAAGCTTGAATTCTCCAAGA
ATACTCTCAAACACGCGCATTTCTGTACCCATCCATGCCCAGACTTTGGA
AATATTGATACAAAGACCGCCTTGATTCTTCACTCAATCACAGTAACACT
TGTGCTGTCCCACCGCTTTAGCGTGTTTCGCCGTATATCGGGCGCTCCTG
CGCTTGAAACCACCCAGCCAAAATGATGTGCTCTTTGAATTCTACGTCCG
CAGGCTCGAAGCTACAGGCGCTATCCCTCAGAGGCAACGCACTCGAAGAC
GCCGAGGCTATTGCCCTCGCTGAGGCCATAGAAGAGAACACTGTCCTTTG
CTCCCTCAATCTCTTCGACAATAAAATCACGGACGTCGGGTGAGTGAAGT
CCGAAACTCGTACACAACTCCGCTCTGTTTACAGTACGGCGTGGAGCGAG
GGAAGTCTGCATGGATTGGTGTGCACAGCGGAACAGCGGGTGGGTGTGGA
TGCAGGAGACGGAATAATCCTAGCTCGTGATAACTACACGGCCATCGTCT
TACCTTCCCGTTGTTTGGAGACTTTCTAAGGTGTCGATTGCCGTAAGAAA
CGTCCCATTTAGCAATACAACGGTAGAGTGCGGAAAATGCTTGCCAAGTC
ATCGTTATGCTGGCGCTTGAAAGCGTGCTACCAGTTTTTTTTTTCTGGAG
CACGTTCTGTGTGTCGGCTGTTTCTACATCAACCGCCGAGGGCACACCGC
AATGCACTCACTCACGAATGCTTGTAGTAGCGACTTGAACCACATCTCGT
TGGTCATGTACGGTGTTTCCTTACAACACGCATCAAGTAACATCACCCAC
TGTACACATGCGTGTGCGTGCCGAACCTTAAACCCAAAACGTCCACGCAG
AGCCTCCGCGTTCGCGGCGATCCTGAGAATCAACACCGTCCTACGCGGTC
TGTCTCTTGCGAGAAATTCCCTGGCCCCTGCCTCCGCGGAGGCCTTCGGG
TTGTTGCTGGCAGGAGGCTATGAGGTCCTCCCCCAAGAGCAAGAGAAGCG
GGCGGCCGCGGACGTCAAAATAGCGGCGCAGAACAAGCTGGCCGCGGACG
CCATGAAGAAGAAGAAGGACGCCAAGGTCGAGACGCGCCTCCCGCTGAGC
GCGGTGACGGTCCGGACCGGGGAGGACGGGCGCAGCAGGGCCGTCGCCGG
AGGCAGCCGGAGCTTGGCCGCGCTCAACCTCGCGGACAACCGGGACCTCG
GCAAGGGCGGAGCGCTCGTTGGACTCCTTTTGAGGATCGTGAACGCGAGG
AAAGAGGAGGCGAAGGAGGCAGGGGCGGGGGCCGGTTTCGGGGCCGGGGG
CGGGGCGGTCGTGCTCCAGGAGCTGCACTTGACGCGCTGTCAGGAATATG
CCGAGGAAGCGGGTGGAGAGGACGATACGGCGATAGCCGCGATGTCGTTT
GCACTGAGGCCGACCAAAATTGTGGTATAAAAATATGCTTGGTGTAGATT
CGGAGTATGTAGGAGGCGGTGATTGTCATGGTCGATTGTTGAAATGAACC
TTGAGTTCATGCCGTTGCTGGTCGGAAGCCAGCATGCGATTGACTATCGT
TTTTCCTGATGGTACCTTTGGCGTAAGCATATGCATGAGAAATTGTTCAA
CACGAGCATGACATGTCCAAGCCGGGTTACGGGCCTGACGTAGACAGTTC
GATCCATTCTGTTTGCCCCTAATGAAAAGAAGCGTTCCGGCCGAGAAGCA
CGCTAGGGTACACGAGTTTGAGGAGTGATGGAGCCGATAGACGGGGAGAT
CTAGACAGAAAGGGGAAGCGAAGGTTGCGAGAAACAGTCTCCCTTCTGCA
CTGCATAAACGTGCCCAGAAAACGGCCAGGTGCTCCATACGCGCGCAGCC
AACGGGTATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig670:1851..4861+

>mRNA_Ecto-sp13_S_contig670.17590.1 ID=mRNA_Ecto-sp13_S_contig670.17590.1|Name=mRNA_Ecto-sp13_S_contig670.17590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig670:1851..4861+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAGGCGGAGACGTTGCCCTCTGCCGTGCGAACAAAGATGAGACA
CAGTGACCCCTGGCGAGCCACTGCAATGGACGGGGAAGCTGAGTGCCTCG
ACTGGGCCGCAAAGGATGGGCAGAAGCCCGCAGGAAACTTCGACGCTGAC
TACGTCGCTCTGTGTCGACTTTTCGAGGTTCCAGCTCATCCATGCCTCGC
GTCACGACTGCCGGGAACCACCCCAAATCGAGACGCCTCGGCAGCAGCAG
CCTCGAAAACAACATCGTCGACTATCCAACTCCGAAACTTTGCGGTGGAT
CTCACGACGGTACGCCTCATGATGGAGGCGCTCAAGAGATCCTCCGATGT
CGATACAGTCAATTTCCACAACGCTGGCCTAACGGGAGCTTCCATTGATG
TTCTCGTAGAAGGCCTTCAACACACAACAGTTCGCTGTCTCGCCCTGGAC
TACAACACCTCGCCGGTGGCACCGTCGTCGTCGTCACTGCCCACGAGACC
ACCCCCCTCAGGAACAACTAAGCCTGCAGCGGCGGAGGCGCCGGCGACCG
AGGGTTCTTCATCGTTGACTAGAAATTTTGCCGGCCTTGTCAGTGAAGGC
TCGAAGCTACAGGCGCTATCCCTCAGAGGCAACGCACTCGAAGACGCCGA
GGCTATTGCCCTCGCTGAGGCCATAGAAGAGAACACTGTCCTTTGCTCCC
TCAATCTCTTCGACAATAAAATCACGGACGTCGGAGCCTCCGCGTTCGCG
GCGATCCTGAGAATCAACACCGTCCTACGCGGTCTGTCTCTTGCGAGAAA
TTCCCTGGCCCCTGCCTCCGCGGAGGCCTTCGGGTTGTTGCTGGCAGGAG
GCTATGAGGTCCTCCCCCAAGAGCAAGAGAAGCGGGCGGCCGCGGACGTC
AAAATAGCGGCGCAGAACAAGCTGGCCGCGGACGCCATGAAGAAGAAGAA
GGACGCCAAGGTCGAGACGCGCCTCCCGCTGAGCGCGGTGACGGTCCGGA
CCGGGGAGGACGGGCGCAGCAGGGCCGTCGCCGGAGGCAGCCGGAGCTTG
GCCGCGCTCAACCTCGCGGACAACCGGGACCTCGGCAAGGGCGGAGCGCT
CGTTGGACTCCTTTTGAGGATCGTGAACGCGAGGAAAGAGGAGGCGAAGG
AGGCAGGGGCGGGGGCCGGTTTCGGGGCCGGGGGCGGGGCGGTCGTGCTC
CAGGAGCTGCACTTGACGCGCTGTCAGGAATATGCCGAGGAAGCGGGTGG
AGAGGACGATACGGCGATAGCCGCGATGTCGTTTGCACTGAGGCCGACCA
AAATTGTGGTATAA
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