mRNA_Ecto-sp13_S_contig1206.1758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1206.1758.1
Unique NamemRNA_Ecto-sp13_S_contig1206.1758.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1206.1758.1 vs. uniprot
Match: A0A6H5KBW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW1_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 1.940e-5
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:  163 CANMSSFAQEDAAAFMLLAGMMYLGM 240
            CA M+SFAQEDAAA MLLAGMMYLGM
Sbjct:    6 CATMTSFAQEDAAALMLLAGMMYLGM 31
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1206.1758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBW1_9PHAE1.940e-588.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1206contigEcto-sp13_S_contig1206:6507..10336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size243
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.9102561-CDS-Ecto-sp13_S_contig1206:6506..65861681462640.9102561-CDS-Ecto-sp13_S_contig1206:6506..6586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1206 6507..6586 -
1681462640.9247477-CDS-Ecto-sp13_S_contig1206:10173..102281681462640.9247477-CDS-Ecto-sp13_S_contig1206:10173..10228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1206 10174..10228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462640.941295-UTR-Ecto-sp13_S_contig1206:10228..103361681462640.941295-UTR-Ecto-sp13_S_contig1206:10228..10336Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1206 10229..10336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1206.1758.1prot_Ecto-sp13_S_contig1206.1758.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1206 6507..10228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1206.1758.1

>prot_Ecto-sp13_S_contig1206.1758.1 ID=prot_Ecto-sp13_S_contig1206.1758.1|Name=mRNA_Ecto-sp13_S_contig1206.1758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MVQQRVHVWGSQGRERGTCANMSSFAQEDAAAFMLLAGMMYLGMH
back to top

mRNA from alignment at Ecto-sp13_S_contig1206:6507..10336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1206.1758.1 ID=mRNA_Ecto-sp13_S_contig1206.1758.1|Name=mRNA_Ecto-sp13_S_contig1206.1758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3830bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1206:6507..10336- (Ectocarpus species13 EcNAP12_S_4_19m)
GATACACTACATGTAGGTTACCCGAAGGGCCCCCTGCCCTCGAAAGGAGT
TGAGGCGGTCGAAGTTCTCCCAAGCGTGCGTGTACACCCATAAATCTCGG
CGGGAAGGATGGTGCAGCAACGGGTCCATGTGTGGGGCTCACAGGGACGG
GAACGCGGTACATGTAAGGTTGACGAACAATAGTTTCGTAGTACTACTGC
TACAGCAGTAGCAGCTATGCGGAGAGAAATAGACTGTACAGCAGCGGGTG
CCCTACATGACGAGTCAATTCCATGGACCTACGTGGAACATTGCGTGGAG
CTCCATGGACCTCCATGAACCACAGAATGCCCCCGAAATTTGCCACTGGA
TTTTCATTGAGTTCTATGGAGTCCATGGAGCTCTACGGAATTTCCACGGC
ATGCCATGGAGTTCCATGGAGTTCCATGGAAAATTGCGCGGTTTCCACGG
GCGTGACCCCCTCCCCATAATATGTTTTGGGTGCGAGTGTATGTATGCAA
ACATACGTAAAGTAAAAAATAATTTGTGTCCGTCCTACCCAGCAGTTTCG
CCGACCGCAAACAGACAGGCGCCGAATGGCATGATCACGAGTCAAGGGTA
TGTAGGGGCAACGAATGGATGCATTGCATCGCTTGGTGTGAATCAGTTCT
GTCCGAGGCGTTGAAATGCAAGCCGCGAAAAAACAATACGGAGATCAGCC
TGCCAGGCGTGGCAAGAGTTGAGAGTAGAAAGAGCAGAGGCGGGTCGGCG
AGAACGGGCCAACGCGCGTCAGAAAACAGTTGTAGACATGCTTAGCAATA
ATCACGCCGATGGCGCCGTTGTCTTTGTCGTTGCCTCCCGCACAGCAGCA
GCAGTGGTTTTTCCATTTAGGGGTATATCATCTCGAACTATGATAATGAC
ATGCAACCAGAATTAGGAAGGGCCGGTTAGTGGACCACCATCGATCGAAA
AGGAGCCCTTGAGGTCGTCGATGTAGGAACTGCCCAAGGGAAGCTTACTT
GTACAACATCTAGTTCCCGCCCCGAAATTGTCGTAGAGATGACCGCGCAA
CACTGGATGCTCCCCAGAAGCAAACCGGAATGTCCACCTGAAAGAACGGG
AAAAATATAGAACGCCGTCGCACTGACTCGTCCGCCCCCTGGATCGGATT
TGGTCAAGAACCGTACCTGTATAGATATACACCGATTTTATCATCAACAT
GGCCCTACAACTCTCTCTCTCCGCCATCTCTGCTCAGTACAAGAATAACA
ATAAACTTAATCCTGAGTTAGCTGGAACCACACGCTAATGTTGAGCGCCG
GCACAACAACAACAAGCATCACAAGGACCTGCAAGAACAAGAGTCTTTGT
TCTTCATGGGTGGAAGTGTAGAAATACGCCCATGAAAATGTACCTTAACT
TCGAATGGCGCGCGCCAAATAAAGCAAGGCACTGGCCAATGGCTTTCGCT
TCAGCCAAAGGAGGTCGACAACGTAGTAACCAATCAAAATCTTCCTTTAA
CGCGATGGGGGGGGCTAGACAGCAATAATAGTGCCGGTGCCCGGTATATT
GCCTGTAAAACATCTATCAACTTAGCTAGTGCCGGTGCCAGGTATAGTGC
CGGTAAAACATCGGGATACACCCCGGCACCGTCGAGGCCCCCCTGTCGTA
AACGGCGTACTGTAAACGGTGTGTCGGTCGCCATCGCTGCCTTAACCACT
TGCAGTCGTCTCCACGCAATCAATCCCATGTGTCTGTTGCGAGTCACTCG
ATTTTTCATCACCACCACCAAAGCGCAACAAGAACATTTCCCGTCCATGA
CTGCAAGTCTAATTGCGGAAAAAAAAGTTCAGAAACGCTCAGACCACATA
CACCGACCGATGGGCTCACTTGAACCGCAGAAGGTCAACATAGTTTCCAC
CTTCCCACCCAACACGAATTTCCGACCACCACCAGGCTTGTTGATGATGA
GTAAAAGTCTACCCACTCCAGAGACACGAACGAAGTCTAGCAAAATATAC
CTACTGTAACATGAAAGCATAAGACACAGACGCACTCTTGGTGGCTAGAA
AACCTACGAATGCCAGCTGAGCACACAGCGAGGCATCGTCGAAGCTTCAA
ACTCCAGCCGAACGCCAAACACCTGACACTGACCATCCCCCGCTCCGCGT
TGGACACTCTCCAGAAACCCACGGCAAACCGTCTAAAGATATTCCCCTAC
GCACCTTTTCACACCTGACTTACGTTTTGACTCATCCCTAGCCTCAAAGA
GAGACGGAGAAATGCTAGACTCTACACCCCCCCCCCGCGCTTGAAAAGCA
CAAACATGCCACTATTTCGCAGTACTCAATGAATTCAAGCTCTTTCAGGA
AAAAAAAACAGGTCGCTGTGTTTCTAGAAAATATGCTTTTCCACCCCCAC
CCCTTCCTTCCTTCACCGAAGCGGAGAACAAGACAACACTACAGAGCCCT
CCCGGCATCGACACGAGGACACGCGTAAGCTATGGTTAGGGCAACCAAAA
CAAGAGATTGACAGGGTGTCGGAGACGGTGGAAGACAGCAAGAGGTGTGT
TCTATCCTTCTACGCTGTGGGAAGGTTGCTGTATTTTTCGAGACACCTTT
CCTCCTCAACGAGTAGCCCCGCCGTGTGCATAGCCCTGCACCACCAGCAC
CGAGGTGGTTTCTGCACGCCAACTAGCCCTAGCGTAGGAGGGGGCAGCCG
TTGTCGATTGCTTATAGCCTCCTCCTGCCGGACTGCTCTATGTGCTCCGC
CGTTGGGTACCATGACCTATGGAATGTCGCAGCATGGACGCTACAACAGT
ACACGGCAGGTCACAATACCTCGCTCTGCCAGGGCTTGAGGCAGATAAAC
CCTATGACTTTGATAAGATACACGAAAGACCCGCTGTACGTACCGAGGAC
CAACAGCAATCGGTAGACATCTGTACGTACCGAGGACCAACAGCAATCGG
TAGACATAGAGCGCGAAACGCTAATGCGTCATTTCGATTCGCTCGGTACT
GCCGCATGCAATATTCCTACGTCCCCCACGCCTACCTGACGTAAAATACG
CCTCACCATGTCCAGCGGTACATGTACAGAAGCAGCAACAGCAGCTGCCC
CCTCTTGCGGAGTACACACGGCATCGAGACTCGGGTGCGCACCCTATGGG
CATTTGCGAAGAAGGAGCACTGCTGTAGAAGGAACACTTACGTACTATTC
TGGATATCTCAACGTGCTGCAACGCTGAACTCCTGTGTAAGTGTAGTACT
TTTACAGTATCGTACTTCCACAAATTGCCGCCGCCAGGCCTTTCTCTGGT
CATTCTGTCGAGATGGGGGAACTGCCTGTTGGTACAACAGCAGTATGTAT
TCGAGACCGCATGTCTGAGCACAGACCATCTGCGCTACAATTGAACGTCA
TGATTGAACGTCAGCGGCGAACCCAAAGATAGGTCTGTAGAAGGCTGTGT
TCACGTCATCGGCAGCTTATTTTGCTGCCGTTACTGAGGCTAGTGCCCCT
ACGCCGTTGTGCGGACAGCGCAGCATTATTATGCAAAAAGTAGGCCCCAG
TTCACGCTCCTTTCCTGCACGAAGTTGACCGACGATCAACCATTTAAATG
TGTTCTCTGTTGCGAAACATGAAGAGAATTCATGACGAACGTTGGGTGAA
AGCCCACGTAGGGTTGAATTCGAACTGAACCGTGCAACGAACTACCAACA
TTGCTGACATGTACGAGCGTCTACAACGATCGGGGTGTGCCGCAATGCAG
GCGCGAACATGTCGTCCTTCGCCCAAGAAGACGCTGCTGCCTTCATGTTG
CTGGCGGGGATGATGTACCTGGGAATGCAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1206:6507..10336-

>mRNA_Ecto-sp13_S_contig1206.1758.1 ID=mRNA_Ecto-sp13_S_contig1206.1758.1|Name=mRNA_Ecto-sp13_S_contig1206.1758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1206:6507..10336- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCAGCAACGGGTCCATGTGTGGGGCTCACAGGGACGGGAACGCGG
TACATGCGCGAACATGTCGTCCTTCGCCCAAGAAGACGCTGCTGCCTTCA
TGTTGCTGGCGGGGATGATGTACCTGGGAATGCAT
back to top