mRNA_Ecto-sp13_S_contig66926.17575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66926.17575.1
Unique NamemRNA_Ecto-sp13_S_contig66926.17575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: D8LKP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKP3_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.330e-34
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE
Sbjct:  166 QVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 226
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: A0A7S2Y0Y8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0Y8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.390e-29
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF+FPGHPAPPLG+LFK+C SIESWL ADP NVA VHCLTG+GRT+TVLAC L WV E
Sbjct:   64 QVLEFKFPGHPAPPLGLLFKICLSIESWLEADPGNVAVVHCLTGKGRTATVLACLLGWVQE 124
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: A0A2P4YPK8_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPK8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.570e-29
Identity = 48/61 (78.69%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF FPGHPAPPLG++FK+C+SIESWL AD KN+AAVHCLTG+GRT TV+ACYLAWVG+
Sbjct:  208 QVLEFNFPGHPAPPLGLMFKICSSIESWLQADEKNLAAVHCLTGKGRTGTVVACYLAWVGQ 268
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: A0A482S1B4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1B4_9ARCH)

HSP 1 Score: 113 bits (283), Expect = 2.420e-29
Identity = 47/61 (77.05%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLE++FPGHPAPPLG+LFK+CTS+ESWL ADP+NVA VHCLTG+GRT+T+LAC LAW+GE
Sbjct:  158 QVLEYKFPGHPAPPLGLLFKICTSVESWLDADPQNVAIVHCLTGKGRTATLLACLLAWLGE 218
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: A0A3R7JAK2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JAK2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.100e-28
Identity = 47/61 (77.05%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF FPGHPAPPLG++FK+C+SIESWL AD KN+AA+HCLTG+GRT TV+ACYLAW+GE
Sbjct:  223 QVLEFNFPGHPAPPLGLMFKICSSIESWLQADEKNLAAIHCLTGKGRTGTVIACYLAWIGE 283
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: A0A3F2RZ89_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZ89_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.070e-28
Identity = 47/61 (77.05%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF FPGHPAPPLG++FK+C+SIESWL AD KN+AA+HCLTG+GRT TV+ACYLAW+GE
Sbjct:  223 QVLEFNFPGHPAPPLGLMFKICSSIESWLQADEKNLAAIHCLTGKGRTGTVIACYLAWIGE 283
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: W2XUD7_PHYPR (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2XUD7_PHYPR)

HSP 1 Score: 115 bits (288), Expect = 2.160e-28
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF FPGHPAPPLG++FK+C+SIESWL AD KN+AAVHCLTG+GRT TVLACYLAWVG+
Sbjct:  215 QVLEFNFPGHPAPPLGLVFKICSSIESWLQADEKNLAAVHCLTGKGRTGTVLACYLAWVGQ 275
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: M4BD47_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD47_HYAAE)

HSP 1 Score: 115 bits (287), Expect = 2.940e-28
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF+FPGHPAPPLG+ FK+C+SIESWL AD KNVAAVHCLTG+GRT TV+ACYLAWVG 
Sbjct:  213 QVLEFKFPGHPAPPLGLAFKLCSSIESWLEADAKNVAAVHCLTGKGRTGTVIACYLAWVGH 273
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BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: A0A6A4G6V6_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G6V6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.940e-28
Identity = 48/61 (78.69%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF FPGHPAPPLG++FK+C+SIESWL AD KN+AAVHCLTG+GRT TV+ACYLAWVG+
Sbjct:  215 QVLEFNFPGHPAPPLGLMFKICSSIESWLQADDKNLAAVHCLTGKGRTGTVIACYLAWVGQ 275
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Match: H3GE86_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GE86_PHYRM)

HSP 1 Score: 114 bits (285), Expect = 5.490e-28
Identity = 47/61 (77.05%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTSTVLACYLAWVGE 183
            +VLEF FPGHPAPPLG++FK+C+SIESWL AD KN+AA+HCLTG+GRT TV+ACYLAWVG+
Sbjct:  213 QVLEFNFPGHPAPPLGLVFKICSSIESWLQADEKNLAAIHCLTGKGRTGTVIACYLAWVGQ 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66926.17575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP3_ECTSI1.330e-3498.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y0Y8_9STRA1.390e-2978.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2P4YPK8_9STRA1.570e-2978.69Phosphatidylinositol-3,4,5-trisphosphate 3-phospha... [more]
A0A482S1B4_9ARCH2.420e-2977.05Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A3R7JAK2_9STRA1.100e-2877.05Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RZ89_9STRA2.070e-2877.05Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
W2XUD7_PHYPR2.160e-2880.33Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
M4BD47_HYAAE2.940e-2880.33Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6A4G6V6_9STRA2.940e-2878.69Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
H3GE86_PHYRM5.490e-2877.05Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66926contigEcto-sp13_S_contig66926:3..209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score134.8
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D8LKP3
Model size207
KEGG koko:K18080
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
Cds size207
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.152285-CDS-Ecto-sp13_S_contig66926:2..2091681463920.152285-CDS-Ecto-sp13_S_contig66926:2..209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66926 3..209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66926.17575.1prot_Ecto-sp13_S_contig66926.17575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66926 3..209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66926.17575.1

>prot_Ecto-sp13_S_contig66926.17575.1 ID=prot_Ecto-sp13_S_contig66926.17575.1|Name=mRNA_Ecto-sp13_S_contig66926.17575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
KVLEFRFPGHPAPPLGMLFKMCTSIESWLLADPKNVAAVHCLTGRGRTST
VLACYLAWVGEDGRGGVL*
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mRNA from alignment at Ecto-sp13_S_contig66926:3..209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66926.17575.1 ID=mRNA_Ecto-sp13_S_contig66926.17575.1|Name=mRNA_Ecto-sp13_S_contig66926.17575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66926:3..209+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGTTGGAGTTTCGATTCCCGGGACACCCCGCCCCCCCCCTGGGGAT
GCTCTTCAAGATGTGCACCTCCATCGAGAGCTGGCTCTTGGCGGACCCTA
AGAACGTGGCTGCGGTGCACTGCCTTACGGGCCGCGGGCGGACCAGCACC
GTCCTGGCGTGCTACTTGGCTTGGGTCGGTGAGGACGGAAGAGGGGGCGT
ACTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66926:3..209+

>mRNA_Ecto-sp13_S_contig66926.17575.1 ID=mRNA_Ecto-sp13_S_contig66926.17575.1|Name=mRNA_Ecto-sp13_S_contig66926.17575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66926:3..209+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGTTGGAGTTTCGATTCCCGGGACACCCCGCCCCCCCCCTGGGGAT
GCTCTTCAAGATGTGCACCTCCATCGAGAGCTGGCTCTTGGCGGACCCTA
AGAACGTGGCTGCGGTGCACTGCCTTACGGGCCGCGGGCGGACCAGCACC
GTCCTGGCGTGCTACTTGGCTTGGGTCGGTGAGGACGGAAGAGGGGGCGT
ACTCTAG
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